Wall clock time and date at job start Tue Mar 31 2020 13:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45190 * 109.47700 * 2 1 4 4 C 1.34230 * 117.00427 * 179.97438 * 3 2 1 5 5 O 1.20819 * 119.99807 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00245 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47481 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.46818 * 55.00081 * 7 6 4 9 9 C 1.50693 * 109.47553 * 174.99837 * 7 6 4 10 10 H 1.07996 * 120.00318 * 240.00141 * 9 7 6 11 11 C 1.37876 * 119.99663 * 60.00501 * 9 7 6 12 12 N 1.31511 * 120.00289 * 359.97438 * 11 9 7 13 13 Si 1.86810 * 119.99879 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47109 * 59.99816 * 13 11 9 15 15 H 1.48502 * 109.46652 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46947 * 299.99348 * 13 11 9 17 17 O 1.42898 * 109.47477 * 295.00543 * 7 6 4 18 18 C 1.35281 * 117.00500 * 149.99684 * 17 7 6 19 19 N 1.30753 * 125.03140 * 359.97438 * 18 17 7 20 20 C 1.35904 * 109.62395 * 180.02562 * 19 18 17 21 21 C 1.39697 * 133.44376 * 179.97438 * 20 19 18 22 22 C 1.37675 * 119.77500 * 180.02562 * 21 20 19 23 23 C 1.38724 * 120.49809 * 359.70861 * 22 21 20 24 24 C 1.50703 * 119.77832 * 180.27603 * 23 22 21 25 25 C 1.37929 * 120.43865 * 0.57019 * 23 22 21 26 26 C 1.38697 * 119.84157 * 359.44953 * 25 23 22 27 27 N 1.36390 * 125.03110 * 180.02562 * 18 17 7 28 28 H 0.96996 * 126.36393 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.46907 * 300.00466 * 1 2 3 30 30 H 1.09000 * 109.46598 * 59.99994 * 1 2 3 31 31 H 1.08997 * 109.47272 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46907 * 239.99534 * 2 1 3 33 33 H 1.09005 * 109.46991 * 120.00270 * 2 1 3 34 34 H 1.09003 * 109.47078 * 59.99951 * 6 4 3 35 35 H 1.09006 * 109.47019 * 300.00689 * 6 4 3 36 36 H 0.96997 * 120.00184 * 179.97438 * 12 11 9 37 37 H 1.08000 * 120.11615 * 0.04634 * 21 20 19 38 38 H 1.07997 * 119.74635 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.46835 * 270.28899 * 24 23 22 40 40 H 1.08998 * 109.47416 * 30.29091 * 24 23 22 41 41 H 1.09005 * 109.46712 * 150.29076 * 24 23 22 42 42 H 1.08002 * 120.08183 * 179.73393 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3449 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8571 0.0001 8 1 5.7808 2.2491 -0.8415 9 6 6.0246 4.2441 -0.1243 10 1 6.6594 4.4921 -0.9620 11 6 5.7410 5.1965 0.8315 12 7 4.9676 4.8946 1.8514 13 14 6.4542 6.9161 0.6770 14 1 5.9904 7.5322 -0.5921 15 1 6.0015 7.7445 1.8233 16 1 7.9372 6.8387 0.6767 17 8 5.8947 2.2640 1.2213 18 6 7.0482 1.5587 1.1764 19 7 7.7783 1.3813 0.1063 20 6 8.8648 0.6256 0.4152 21 6 9.9447 0.1461 -0.3301 22 6 10.9139 -0.6157 0.2829 23 6 10.8295 -0.9060 1.6368 24 6 11.9028 -1.7361 2.2925 25 6 9.7668 -0.4449 2.3854 26 6 8.7811 0.3237 1.7843 27 7 7.6213 0.9266 2.2405 28 1 7.2798 0.9038 3.1481 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5846 3.4699 0.8895 35 1 3.5853 3.4689 -0.8905 36 1 4.7684 5.5645 2.5240 37 1 10.0192 0.3725 -1.3835 38 1 11.7483 -0.9865 -0.2938 39 1 11.6352 -2.7909 2.2300 40 1 12.8521 -1.5712 1.7828 41 1 11.9973 -1.4466 3.3392 42 1 9.7047 -0.6779 3.4381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226506014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:11 Heat of formation + Delta-G solvation = -77.981272 kcal Electronic energy + Delta-G solvation = -26540.476632 eV Core-core repulsion = 22678.916385 eV Total energy + Delta-G solvation = -3861.560247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.88601 -41.47393 -39.53442 -38.12222 -37.44071 -35.15929 -34.14062 -32.94339 -32.10860 -31.84081 -30.55560 -28.21020 -26.85210 -24.96502 -23.88413 -23.29568 -22.40885 -22.22278 -21.43270 -19.63789 -18.99709 -18.38785 -17.81053 -17.71880 -17.35093 -17.11076 -16.66206 -16.42441 -15.70268 -15.36810 -15.14191 -14.96626 -14.76835 -14.50716 -14.19863 -13.90250 -13.74678 -13.57921 -13.30679 -13.00984 -12.96058 -12.86011 -12.70369 -12.61628 -12.50099 -12.43273 -12.23147 -12.02364 -11.64001 -11.55078 -11.49231 -11.40853 -10.80410 -10.77152 -10.66878 -9.20680 -8.58453 -8.24626 -6.50280 0.17520 0.63308 1.25558 1.30979 1.41653 1.45663 1.50081 1.79008 2.03258 2.35891 2.93885 2.98418 3.22510 3.51961 3.89475 3.97519 4.00868 4.10495 4.12288 4.31811 4.35247 4.42376 4.48200 4.52621 4.65538 4.79267 4.83215 4.87145 4.90842 4.92217 4.99551 5.11567 5.13451 5.29396 5.32835 5.42838 5.48139 5.62610 5.68382 5.72914 5.92728 6.01224 6.18007 6.54482 6.81729 6.89218 7.15860 7.30897 8.75683 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.004655 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.150663 B = 6013.999709 C = 8353.864844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.363 6.363 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.096 4.096 7 C 0.243 3.757 8 H 0.030 0.970 9 C -0.564 4.564 10 H 0.057 0.943 11 C 0.048 3.952 12 N -0.880 5.880 13 Si 0.957 3.043 14 H -0.260 1.260 15 H -0.274 1.274 16 H -0.285 1.285 17 O -0.294 6.294 18 C 0.487 3.513 19 N -0.575 5.575 20 C 0.033 3.967 21 C -0.098 4.098 22 C -0.114 4.114 23 C -0.088 4.088 24 C -0.100 4.100 25 C -0.109 4.109 26 C 0.024 3.976 27 N -0.598 5.598 28 H 0.429 0.571 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.272 0.728 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 -10.783 1.739 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.281 6.281 4 C 0.309 3.691 5 O -0.431 6.431 6 C -0.133 4.133 7 C 0.189 3.811 8 H 0.048 0.952 9 C -0.601 4.601 10 H 0.075 0.925 11 C -0.157 4.157 12 N -0.516 5.516 13 Si 0.782 3.218 14 H -0.184 1.184 15 H -0.199 1.199 16 H -0.211 1.211 17 O -0.196 6.196 18 C 0.184 3.816 19 N -0.316 5.316 20 C -0.084 4.084 21 C -0.118 4.118 22 C -0.133 4.133 23 C -0.090 4.090 24 C -0.157 4.157 25 C -0.130 4.130 26 C -0.083 4.083 27 N -0.221 5.221 28 H 0.269 0.731 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.178 0.822 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.861 -10.599 1.245 10.833 hybrid contribution -0.028 0.768 1.011 1.271 sum 1.833 -9.830 2.257 10.251 Atomic orbital electron populations 1.21807 0.89721 1.04463 1.03796 1.23284 0.97570 0.79686 1.01976 1.86542 1.24022 1.33509 1.83985 1.24539 0.80444 0.93431 0.70724 1.90605 1.61130 1.44266 1.47109 1.21706 0.94834 0.89199 1.07595 1.19729 0.89336 0.91645 0.80351 0.95152 1.21491 1.32691 0.95348 1.10558 0.92453 1.25695 0.93872 1.02200 0.93939 1.69924 1.34759 1.35712 1.11176 0.85642 0.78298 0.79264 0.78638 1.18408 1.19889 1.21122 1.86088 1.30907 1.61514 1.41094 1.21128 0.88387 0.88895 0.83174 1.70790 1.08491 1.26381 1.25958 1.19485 0.96022 1.00163 0.92716 1.20428 0.92293 0.99252 0.99801 1.21084 0.98944 0.98618 0.94695 1.19970 0.96063 0.99226 0.93697 1.20754 0.95606 0.98662 1.00658 1.20049 0.92710 0.99463 1.00748 1.18995 0.90482 1.03304 0.95470 1.42434 1.21277 1.46934 1.11500 0.73112 0.91373 0.90974 0.87823 0.91662 0.92271 0.85438 0.85793 0.91876 0.85406 0.82168 0.90065 0.89850 0.90791 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 10.29 71.98 0.74 -2.02 16 2 C 0.05 1.40 6.19 71.98 0.45 1.85 16 3 O -0.36 -13.41 10.22 -51.42 -0.53 -13.94 16 4 C 0.46 20.38 7.84 71.24 0.56 20.94 16 5 O -0.54 -26.66 15.17 27.05 0.41 -26.25 16 6 C -0.10 -4.44 5.22 29.85 0.16 -4.28 16 7 C 0.24 12.91 1.69 29.84 0.05 12.96 16 8 H 0.03 1.71 7.05 -2.39 -0.02 1.70 16 9 C -0.56 -31.04 8.90 25.60 0.23 -30.81 16 10 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 11 C 0.05 2.53 5.24 84.66 0.44 2.97 16 12 N -0.88 -46.60 10.93 21.45 0.23 -46.37 16 13 Si 0.96 41.93 29.54 68.60 2.03 43.96 16 14 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 17 O -0.29 -15.94 8.46 -71.87 -0.61 -16.55 16 18 C 0.49 24.95 8.82 179.75 1.58 26.54 16 19 N -0.58 -29.95 10.11 -306.48 -3.10 -33.04 16 20 C 0.03 1.47 7.22 39.40 0.28 1.76 16 21 C -0.10 -3.44 10.10 22.49 0.23 -3.21 16 22 C -0.11 -2.98 9.66 22.25 0.22 -2.77 16 23 C -0.09 -2.16 5.88 -19.82 -0.12 -2.28 16 24 C -0.10 -1.51 10.00 71.24 0.71 -0.80 16 25 C -0.11 -3.19 9.70 22.31 0.22 -2.97 16 26 C 0.02 0.96 7.30 38.75 0.28 1.24 16 27 N -0.60 -25.18 6.26 -302.47 -1.89 -27.07 16 28 H 0.43 15.21 8.96 -92.71 -0.83 14.38 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 33 H 0.06 1.76 8.13 -2.38 -0.02 1.74 16 34 H 0.13 6.27 6.22 -2.39 -0.01 6.26 16 35 H 0.12 5.18 8.14 -2.38 -0.02 5.16 16 36 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 37 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 41 H 0.07 0.98 8.08 -2.38 -0.02 0.96 16 42 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -71.64 361.73 2.79 -68.85 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.22 Total: 31.32 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 6.03 Total: 19.10 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.76 Total: -106.48 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -0.72 Total: -56.74 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -71.64 2.79 -68.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226506014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.134 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds