Wall clock time and date at job start Tue Mar 31 2020 13:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45203 * 109.47356 * 2 1 4 4 C 1.34221 * 117.00199 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00416 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00081 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.47029 * 179.97438 * 6 4 3 8 8 H 1.08990 * 109.47282 * 54.99719 * 7 6 4 9 9 C 1.50701 * 109.46643 * 175.00200 * 7 6 4 10 10 H 1.07997 * 119.99540 * 239.99640 * 9 7 6 11 11 C 1.37873 * 120.00492 * 59.99870 * 9 7 6 12 12 N 1.31515 * 120.00055 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00112 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47251 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46793 * 119.99993 * 13 11 9 16 16 H 1.48495 * 109.47422 * 239.99866 * 13 11 9 17 17 O 1.42900 * 109.47009 * 294.99684 * 7 6 4 18 18 C 1.35854 * 116.99805 * 155.83840 * 17 7 6 19 19 C 1.36125 * 120.24956 * 5.48963 * 18 17 7 20 20 C 1.39621 * 121.75506 * 179.76823 * 19 18 17 21 21 C 1.35648 * 121.78294 * 0.46466 * 20 19 18 22 22 C 1.41269 * 119.62758 * 359.52393 * 21 20 19 23 23 C 1.38185 * 134.77354 * 180.22615 * 22 21 20 24 24 C 1.50699 * 126.05157 * 0.04969 * 23 22 21 25 25 N 1.34096 * 107.89883 * 180.02562 * 23 22 21 26 26 H 0.97003 * 125.04536 * 180.02562 * 25 23 22 27 27 N 1.39962 * 109.90967 * 0.02562 * 25 23 22 28 28 C 1.32024 * 108.95218 * 0.02562 * 27 25 23 29 29 H 1.09006 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47327 * 300.00205 * 1 2 3 31 31 H 1.09001 * 109.46779 * 60.00217 * 1 2 3 32 32 H 1.08996 * 109.47327 * 239.99795 * 2 1 3 33 33 H 1.09001 * 109.46779 * 119.99783 * 2 1 3 34 34 H 1.08995 * 109.46821 * 59.99882 * 6 4 3 35 35 H 1.08998 * 109.46919 * 299.99659 * 6 4 3 36 36 H 0.96996 * 120.00560 * 180.02562 * 12 11 9 37 37 H 1.08000 * 119.11706 * 0.02562 * 19 18 17 38 38 H 1.08005 * 119.11289 * 180.26753 * 20 19 18 39 39 H 1.07997 * 120.18216 * 179.80382 * 21 20 19 40 40 H 1.09003 * 109.47236 * 89.99599 * 24 23 22 41 41 H 1.09004 * 109.47118 * 209.99953 * 24 23 22 42 42 H 1.09001 * 109.46988 * 329.99684 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7813 2.2490 -0.8395 9 6 6.0244 4.2444 -0.1229 10 1 6.6599 4.4921 -0.9602 11 6 5.7399 5.1972 0.8322 12 7 4.9656 4.8956 1.8516 13 14 6.4542 6.9163 0.6783 14 1 7.2857 6.9989 -0.5493 15 1 5.3498 7.9055 0.5950 16 1 7.2944 7.2115 1.8666 17 8 5.8934 2.2647 1.2233 18 6 7.1103 1.6610 1.2089 19 6 7.8984 1.7330 0.1013 20 6 9.1561 1.1285 0.0538 21 6 9.6535 0.4305 1.1053 22 6 8.8916 0.3137 2.2891 23 6 9.0830 -0.2981 3.5133 24 6 10.2994 -1.0831 3.9319 25 7 7.9950 -0.0692 4.2630 26 1 7.8670 -0.3871 5.1705 27 7 7.0717 0.6965 3.5418 28 6 7.5677 0.9513 2.3451 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.5843 3.4700 0.8895 35 1 3.5852 3.4690 -0.8905 36 1 4.7651 5.5660 2.5234 37 1 7.5431 2.2757 -0.7621 38 1 9.7477 1.2163 -0.8455 39 1 10.6284 -0.0294 1.0392 40 1 11.0229 -0.4123 4.3953 41 1 10.0071 -1.8522 4.6469 42 1 10.7479 -1.5524 3.0564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227083151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:53 Heat of formation + Delta-G solvation = -37.160868 kcal Electronic energy + Delta-G solvation = -26963.343512 eV Core-core repulsion = 23103.553370 eV Total energy + Delta-G solvation = -3859.790142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79261 -39.73216 -38.13302 -36.04679 -35.36395 -33.24973 -32.33353 -31.54193 -30.32127 -29.99944 -28.41379 -26.34961 -26.30099 -23.63651 -23.04553 -21.79818 -21.12866 -19.80243 -19.31817 -17.31043 -17.06134 -16.87049 -16.13925 -15.92201 -15.79637 -15.23570 -14.85362 -14.68892 -14.39208 -14.12380 -13.74197 -13.46804 -12.98099 -12.82106 -12.77838 -12.46536 -12.39539 -12.06490 -12.01931 -11.69598 -11.42123 -11.19138 -11.08929 -11.01528 -10.96099 -10.81307 -10.59169 -10.33584 -10.07897 -9.88833 -9.66367 -9.50892 -9.26329 -8.76387 -8.69782 -7.97597 -6.37308 -6.13835 -4.37180 1.35865 2.48961 3.07735 3.09277 3.10245 3.21973 3.31900 3.35161 3.38951 4.29755 4.41580 4.65675 4.86798 4.97646 5.07912 5.13047 5.18337 5.22276 5.42946 5.45468 5.53368 5.71200 5.78379 5.87436 5.94057 5.96861 6.04989 6.11425 6.15546 6.35449 6.39232 6.52275 6.63034 6.82439 7.03797 7.05701 7.20704 7.35332 7.46270 7.54163 7.66580 7.73471 7.93809 8.05476 8.55829 8.62950 8.99281 9.40405 10.84371 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008590 B = 0.005609 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.885009 B = 4991.107506 C = 7149.985761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.513 6.513 6 C -0.101 4.101 7 C 0.223 3.777 8 H 0.035 0.965 9 C -0.558 4.558 10 H 0.070 0.930 11 C 0.085 3.915 12 N -0.856 5.856 13 Si 0.895 3.105 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.282 1.282 17 O -0.277 6.277 18 C 0.216 3.784 19 C -0.231 4.231 20 C -0.080 4.080 21 C -0.142 4.142 22 C -0.158 4.158 23 C 0.063 3.937 24 C -0.082 4.082 25 N -0.437 5.437 26 H 0.435 0.565 27 N -0.271 5.271 28 C 0.095 3.905 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.266 0.734 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -9.869 0.771 10.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.300 3.700 5 O -0.400 6.400 6 C -0.138 4.138 7 C 0.169 3.831 8 H 0.053 0.947 9 C -0.595 4.595 10 H 0.088 0.912 11 C -0.123 4.123 12 N -0.491 5.491 13 Si 0.722 3.278 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.208 1.208 17 O -0.187 6.187 18 C 0.163 3.837 19 C -0.255 4.255 20 C -0.099 4.099 21 C -0.162 4.162 22 C -0.168 4.168 23 C -0.072 4.072 24 C -0.140 4.140 25 N -0.142 5.142 26 H 0.278 0.722 27 N -0.098 5.098 28 C -0.060 4.060 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.173 -9.885 1.858 10.126 hybrid contribution 0.974 0.580 -0.075 1.136 sum 2.147 -9.305 1.783 9.714 Atomic orbital electron populations 1.21774 0.93349 1.02268 1.03301 1.22840 0.94795 0.81883 1.02004 1.86570 1.26221 1.30899 1.84813 1.24902 0.79466 0.94350 0.71265 1.90606 1.60152 1.43604 1.45641 1.21831 0.96655 0.88129 1.07193 1.19843 0.88633 0.92613 0.82012 0.94673 1.21430 1.32797 0.94774 1.10511 0.91187 1.25049 0.93809 0.98989 0.94404 1.69882 1.34193 1.34226 1.10752 0.86488 0.79154 0.83687 0.78468 1.19370 1.20664 1.20773 1.86247 1.28530 1.65101 1.38852 1.17593 0.87257 0.89218 0.89585 1.20556 0.96385 1.08944 0.99582 1.20239 0.95268 0.96850 0.97565 1.19736 0.99247 1.04995 0.92224 1.19075 0.96238 1.06217 0.95249 1.20907 0.91578 1.02441 0.92271 1.20349 0.92825 0.98335 1.02514 1.46215 1.12565 1.40528 1.14906 0.72205 1.77777 1.11606 1.14755 1.05673 1.20365 0.93961 0.99247 0.92435 0.90897 0.91620 0.91716 0.91911 0.91804 0.84244 0.87911 0.92362 0.84706 0.87081 0.87169 0.90409 0.91375 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.29 37.15 0.38 -1.34 16 2 C 0.06 0.92 6.19 37.15 0.23 1.15 16 3 O -0.37 -7.07 10.22 -39.23 -0.40 -7.47 16 4 C 0.46 10.10 7.84 36.01 0.28 10.38 16 5 O -0.51 -12.50 15.17 -24.05 -0.36 -12.87 16 6 C -0.10 -2.31 5.22 -27.88 -0.15 -2.46 16 7 C 0.22 5.59 1.35 -27.88 -0.04 5.55 16 8 H 0.04 0.87 6.18 -51.93 -0.32 0.54 16 9 C -0.56 -14.47 7.91 -34.44 -0.27 -14.74 16 10 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 11 C 0.08 2.23 5.24 -17.82 -0.09 2.14 16 12 N -0.86 -23.40 10.93 55.43 0.61 -22.79 16 13 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 O -0.28 -7.49 8.45 -33.71 -0.28 -7.78 16 18 C 0.22 5.40 6.62 -39.07 -0.26 5.14 16 19 C -0.23 -5.17 8.63 -39.83 -0.34 -5.51 16 20 C -0.08 -1.49 9.89 -39.99 -0.40 -1.89 16 21 C -0.14 -2.49 10.09 -39.36 -0.40 -2.89 16 22 C -0.16 -3.05 6.26 -105.19 -0.66 -3.71 16 23 C 0.06 0.96 7.27 -81.62 -0.59 0.37 16 24 C -0.08 -0.78 10.44 36.01 0.38 -0.40 16 25 N -0.44 -7.11 7.19 33.86 0.24 -6.86 16 26 H 0.43 5.07 8.96 -182.70 -1.64 3.43 16 27 N -0.27 -6.07 12.70 33.31 0.42 -5.65 16 28 C 0.10 2.23 7.45 -82.95 -0.62 1.62 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 33 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.14 3.50 6.22 -51.93 -0.32 3.18 16 35 H 0.10 2.12 8.14 -51.93 -0.42 1.69 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.14 3.02 5.52 -52.49 -0.29 2.73 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -33.67 358.58 -8.70 -42.37 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.77 Total: 6.82 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.54 Total: -6.59 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 1.27 Total: -35.30 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.05 Total: -28.12 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.67 -8.70 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227083151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.210 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds