Wall clock time and date at job start Tue Mar 31 2020 13:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45203 * 109.47356 * 2 1 4 4 C 1.34221 * 117.00199 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00416 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00081 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.47029 * 179.97438 * 6 4 3 8 8 H 1.08990 * 109.47282 * 54.99719 * 7 6 4 9 9 C 1.50701 * 109.46643 * 175.00200 * 7 6 4 10 10 H 1.07997 * 119.99540 * 239.99640 * 9 7 6 11 11 C 1.37873 * 120.00492 * 59.99870 * 9 7 6 12 12 N 1.31515 * 120.00055 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00112 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47251 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46793 * 119.99993 * 13 11 9 16 16 H 1.48495 * 109.47422 * 239.99866 * 13 11 9 17 17 O 1.42900 * 109.47009 * 294.99684 * 7 6 4 18 18 C 1.35854 * 116.99805 * 155.83840 * 17 7 6 19 19 C 1.36125 * 120.24956 * 5.48963 * 18 17 7 20 20 C 1.39621 * 121.75506 * 179.76823 * 19 18 17 21 21 C 1.35648 * 121.78294 * 0.46466 * 20 19 18 22 22 C 1.41269 * 119.62758 * 359.52393 * 21 20 19 23 23 C 1.38185 * 134.77354 * 180.22615 * 22 21 20 24 24 C 1.50699 * 126.05157 * 0.04969 * 23 22 21 25 25 N 1.34096 * 107.89883 * 180.02562 * 23 22 21 26 26 H 0.97003 * 125.04536 * 180.02562 * 25 23 22 27 27 N 1.39962 * 109.90967 * 0.02562 * 25 23 22 28 28 C 1.32024 * 108.95218 * 0.02562 * 27 25 23 29 29 H 1.09006 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47327 * 300.00205 * 1 2 3 31 31 H 1.09001 * 109.46779 * 60.00217 * 1 2 3 32 32 H 1.08996 * 109.47327 * 239.99795 * 2 1 3 33 33 H 1.09001 * 109.46779 * 119.99783 * 2 1 3 34 34 H 1.08995 * 109.46821 * 59.99882 * 6 4 3 35 35 H 1.08998 * 109.46919 * 299.99659 * 6 4 3 36 36 H 0.96996 * 120.00560 * 180.02562 * 12 11 9 37 37 H 1.08000 * 119.11706 * 0.02562 * 19 18 17 38 38 H 1.08005 * 119.11289 * 180.26753 * 20 19 18 39 39 H 1.07997 * 120.18216 * 179.80382 * 21 20 19 40 40 H 1.09003 * 109.47236 * 89.99599 * 24 23 22 41 41 H 1.09004 * 109.47118 * 209.99953 * 24 23 22 42 42 H 1.09001 * 109.46988 * 329.99684 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7813 2.2490 -0.8395 9 6 6.0244 4.2444 -0.1229 10 1 6.6599 4.4921 -0.9602 11 6 5.7399 5.1972 0.8322 12 7 4.9656 4.8956 1.8516 13 14 6.4542 6.9163 0.6783 14 1 7.2857 6.9989 -0.5493 15 1 5.3498 7.9055 0.5950 16 1 7.2944 7.2115 1.8666 17 8 5.8934 2.2647 1.2233 18 6 7.1103 1.6610 1.2089 19 6 7.8984 1.7330 0.1013 20 6 9.1561 1.1285 0.0538 21 6 9.6535 0.4305 1.1053 22 6 8.8916 0.3137 2.2891 23 6 9.0830 -0.2981 3.5133 24 6 10.2994 -1.0831 3.9319 25 7 7.9950 -0.0692 4.2630 26 1 7.8670 -0.3871 5.1705 27 7 7.0717 0.6965 3.5418 28 6 7.5677 0.9513 2.3451 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.5843 3.4700 0.8895 35 1 3.5852 3.4690 -0.8905 36 1 4.7651 5.5660 2.5234 37 1 7.5431 2.2757 -0.7621 38 1 9.7477 1.2163 -0.8455 39 1 10.6284 -0.0294 1.0392 40 1 11.0229 -0.4123 4.3953 41 1 10.0071 -1.8522 4.6469 42 1 10.7479 -1.5524 3.0564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227083151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:52 Heat of formation + Delta-G solvation = -58.559846 kcal Electronic energy + Delta-G solvation = -26964.271441 eV Core-core repulsion = 23103.553370 eV Total energy + Delta-G solvation = -3860.718071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23131 -41.44796 -39.83306 -37.66910 -36.97612 -35.10178 -33.69451 -32.89319 -31.97866 -31.45800 -29.86935 -28.21616 -27.58446 -25.28274 -24.39925 -23.33998 -22.66386 -21.51101 -20.89080 -19.06403 -18.56521 -18.45276 -17.80148 -17.54608 -17.41573 -16.87781 -16.51810 -16.18374 -15.98034 -15.60035 -15.17710 -15.16864 -14.35897 -14.03038 -13.97965 -13.85908 -13.67459 -13.48197 -13.29928 -13.15204 -12.93602 -12.85514 -12.66516 -12.55622 -12.51789 -12.44401 -12.29232 -12.05945 -11.53063 -11.48205 -11.34060 -11.20917 -11.08021 -10.69075 -10.44371 -9.48795 -8.19349 -7.88431 -6.41840 -0.06132 0.94581 1.30410 1.40011 1.43355 1.54491 1.60905 1.82256 1.86072 2.39190 2.77042 3.08370 3.23684 3.46898 3.79531 3.94587 3.97273 4.11183 4.12883 4.30883 4.32070 4.43293 4.51910 4.56286 4.70767 4.80553 4.81039 4.85499 4.90133 4.91681 4.98298 5.10905 5.12212 5.20359 5.32956 5.50112 5.56863 5.69589 5.75795 5.91248 5.98213 6.17588 6.35233 6.53717 6.65058 6.87062 7.18069 7.41344 8.85702 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008590 B = 0.005609 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.885009 B = 4991.107506 C = 7149.985761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.366 6.366 4 C 0.462 3.538 5 O -0.539 6.539 6 C -0.097 4.097 7 C 0.225 3.775 8 H 0.025 0.975 9 C -0.567 4.567 10 H 0.068 0.932 11 C 0.042 3.958 12 N -0.885 5.885 13 Si 0.956 3.044 14 H -0.262 1.262 15 H -0.270 1.270 16 H -0.290 1.290 17 O -0.309 6.309 18 C 0.150 3.850 19 C -0.220 4.220 20 C -0.116 4.116 21 C -0.102 4.102 22 C -0.200 4.200 23 C 0.112 3.888 24 C -0.082 4.082 25 N -0.421 5.421 26 H 0.454 0.546 27 N -0.339 5.339 28 C 0.062 3.938 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.265 0.735 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 -11.623 1.228 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 O -0.284 6.284 4 C 0.308 3.692 5 O -0.429 6.429 6 C -0.134 4.134 7 C 0.170 3.830 8 H 0.043 0.957 9 C -0.604 4.604 10 H 0.086 0.914 11 C -0.163 4.163 12 N -0.521 5.521 13 Si 0.781 3.219 14 H -0.185 1.185 15 H -0.195 1.195 16 H -0.217 1.217 17 O -0.222 6.222 18 C 0.100 3.900 19 C -0.243 4.243 20 C -0.135 4.135 21 C -0.122 4.122 22 C -0.210 4.210 23 C -0.026 4.026 24 C -0.140 4.140 25 N -0.126 5.126 26 H 0.301 0.699 27 N -0.168 5.168 28 C -0.091 4.091 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.179 0.821 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.490 -11.645 2.323 12.377 hybrid contribution 0.397 0.866 -0.098 0.957 sum 3.887 -10.780 2.225 11.673 Atomic orbital electron populations 1.21803 0.89679 1.04486 1.03748 1.23271 0.97609 0.79772 1.01870 1.86542 1.24270 1.33476 1.84106 1.24606 0.80336 0.93591 0.70695 1.90585 1.61067 1.44253 1.47000 1.21678 0.95981 0.88855 1.06911 1.19769 0.89516 0.91974 0.81727 0.95709 1.21623 1.32738 0.95540 1.10467 0.91387 1.25743 0.94135 1.02351 0.94030 1.70032 1.35506 1.35124 1.11453 0.85542 0.78593 0.79658 0.78079 1.18542 1.19469 1.21657 1.86169 1.30195 1.66703 1.39094 1.18084 0.87622 0.92442 0.91831 1.20732 0.97608 1.07833 0.98138 1.20527 0.94495 0.98528 0.99970 1.20306 1.00077 1.01494 0.90323 1.19637 0.95394 1.08176 0.97782 1.21932 0.91902 0.98661 0.90105 1.20709 0.90106 0.98809 1.04401 1.46277 1.11966 1.38782 1.15583 0.69894 1.77670 1.14325 1.18328 1.06524 1.20628 0.96104 0.99899 0.92490 0.87723 0.91634 0.90790 0.91340 0.92780 0.86388 0.86118 0.92597 0.86214 0.83738 0.82105 0.87914 0.88151 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 10.29 71.98 0.74 -2.28 16 2 C 0.05 1.52 6.19 71.98 0.45 1.96 16 3 O -0.37 -14.61 10.22 -51.33 -0.52 -15.13 16 4 C 0.46 21.71 7.84 71.24 0.56 22.27 16 5 O -0.54 -27.98 15.17 27.03 0.41 -27.57 16 6 C -0.10 -4.75 5.22 29.85 0.16 -4.60 16 7 C 0.22 12.06 1.35 29.85 0.04 12.10 16 8 H 0.03 1.33 6.18 -2.39 -0.01 1.32 16 9 C -0.57 -30.94 7.91 25.60 0.20 -30.74 16 10 H 0.07 3.61 7.81 -2.91 -0.02 3.58 16 11 C 0.04 2.27 5.24 84.65 0.44 2.72 16 12 N -0.89 -50.99 10.93 21.45 0.23 -50.76 16 13 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 14 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 17 O -0.31 -18.05 8.45 -78.12 -0.66 -18.71 16 18 C 0.15 8.02 6.62 22.60 0.15 8.17 16 19 C -0.22 -10.30 8.63 22.11 0.19 -10.11 16 20 C -0.12 -4.24 9.89 22.00 0.22 -4.03 16 21 C -0.10 -3.29 10.09 22.42 0.23 -3.07 16 22 C -0.20 -7.41 6.26 -20.24 -0.13 -7.54 16 23 C 0.11 3.08 7.27 42.20 0.31 3.39 16 24 C -0.08 -1.06 10.44 71.24 0.74 -0.31 16 25 N -0.42 -13.11 7.19 -46.80 -0.34 -13.45 16 26 H 0.45 9.69 8.96 -213.41 -1.91 7.78 16 27 N -0.34 -15.82 12.70 -48.52 -0.62 -16.44 16 28 C 0.06 3.01 7.45 42.25 0.31 3.32 16 29 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 32 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 33 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 34 H 0.12 6.37 6.22 -2.39 -0.01 6.36 16 35 H 0.12 5.26 8.14 -2.39 -0.02 5.24 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.12 5.76 5.52 -2.91 -0.02 5.74 16 38 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -81.58 358.58 4.29 -77.29 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.85 Total: 28.31 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.61 Total: -8.74 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -0.72 Total: -80.64 kcal Atomic # 8 Polarization: -60.63 SS G_CDS: -0.77 Total: -61.41 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -81.58 4.29 -77.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227083151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.727 kcal (2) G-P(sol) polarization free energy of solvation -81.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds