Wall clock time and date at job start Tue Mar 31 2020 13:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47137 * 2 1 4 4 C 1.34236 * 117.00183 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00059 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47086 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46829 * 54.48426 * 7 6 4 9 9 C 1.50690 * 109.47071 * 174.48823 * 7 6 4 10 10 H 1.08003 * 120.00387 * 94.99613 * 9 7 6 11 11 C 1.37881 * 120.00181 * 274.99158 * 9 7 6 12 12 N 1.31506 * 120.00361 * 185.02318 * 11 9 7 13 13 Si 1.86803 * 119.99506 * 5.02678 * 11 9 7 14 14 H 1.48504 * 109.47261 * 84.82577 * 13 11 9 15 15 H 1.48498 * 109.46991 * 204.82274 * 13 11 9 16 16 H 1.48493 * 109.47258 * 324.82413 * 13 11 9 17 17 O 1.42898 * 109.47107 * 294.48798 * 7 6 4 18 18 C 1.35278 * 117.00108 * 149.99616 * 17 7 6 19 19 N 1.30755 * 125.03341 * 359.97438 * 18 17 7 20 20 C 1.35899 * 109.62589 * 180.02562 * 19 18 17 21 21 C 1.39707 * 133.44551 * 180.02562 * 20 19 18 22 22 C 1.37677 * 119.77520 * 179.38038 * 21 20 19 23 23 C 1.38720 * 120.50011 * 0.46473 * 22 21 20 24 24 C 1.37934 * 120.43521 * 359.71737 * 23 22 21 25 25 C 1.50700 * 120.07475 * 179.97438 * 24 23 22 26 26 C 1.38689 * 119.84541 * 359.97438 * 24 23 22 27 27 N 1.36381 * 125.03317 * 179.97438 * 18 17 7 28 28 H 0.97000 * 126.36600 * 359.94785 * 27 18 17 29 29 H 1.09011 * 109.46790 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47027 * 299.99533 * 1 2 3 31 31 H 1.08991 * 109.47165 * 59.99904 * 1 2 3 32 32 H 1.09005 * 109.47075 * 239.99757 * 2 1 3 33 33 H 1.09000 * 109.47161 * 120.00712 * 2 1 3 34 34 H 1.09004 * 109.46693 * 59.99833 * 6 4 3 35 35 H 1.08997 * 109.46941 * 299.99804 * 6 4 3 36 36 H 0.97001 * 120.00224 * 180.02562 * 12 11 9 37 37 H 1.07999 * 120.11313 * 359.96871 * 21 20 19 38 38 H 1.08003 * 119.74684 * 180.18652 * 22 21 20 39 39 H 1.08000 * 119.78193 * 179.69342 * 23 22 21 40 40 H 1.09005 * 109.47094 * 270.02187 * 25 24 23 41 41 H 1.08999 * 109.47592 * 30.02274 * 25 24 23 42 42 H 1.08995 * 109.47062 * 150.02548 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8369 9 6 6.0242 4.2433 -0.1360 10 1 6.3105 4.7981 0.7453 11 6 6.1855 4.8034 -1.3856 12 7 6.7779 5.9707 -1.5116 13 14 5.5623 3.9040 -2.8996 14 1 4.1232 4.2108 -3.1003 15 1 6.3330 4.3453 -4.0897 16 1 5.7351 2.4411 -2.7125 17 8 5.8952 2.2742 1.2257 18 6 7.0487 1.5686 1.1858 19 7 7.7781 1.3825 0.1167 20 6 8.8648 0.6294 0.4310 21 6 9.9448 0.1445 -0.3108 22 6 10.9211 -0.6014 0.3105 23 6 10.8359 -0.8834 1.6661 24 6 9.7741 -0.4153 2.4117 25 6 9.6893 -0.7270 3.8837 26 6 8.7847 0.3430 1.8037 27 7 7.6229 0.9460 2.2547 28 1 7.2827 0.9316 3.1630 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5851 3.4690 0.8905 35 1 3.5844 3.4700 -0.8895 36 1 6.8910 6.3649 -2.3906 37 1 10.0185 0.3620 -1.3661 38 1 11.7574 -0.9734 -0.2628 39 1 11.6058 -1.4737 2.1406 40 1 9.1427 -1.6592 4.0268 41 1 10.6948 -0.8290 4.2921 42 1 9.1691 0.0817 4.3969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227270905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:17 Heat of formation + Delta-G solvation = -54.424142 kcal Electronic energy + Delta-G solvation = -26729.890299 eV Core-core repulsion = 22869.351566 eV Total energy + Delta-G solvation = -3860.538733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58774 -40.11342 -38.21339 -36.69379 -36.05004 -33.44799 -33.18895 -31.86960 -31.05310 -30.79216 -28.34561 -26.66299 -26.48291 -23.42280 -22.59249 -21.99298 -21.27545 -20.58251 -19.77337 -17.98034 -17.67069 -17.06703 -16.72039 -16.54726 -16.17115 -15.70206 -15.29619 -14.63979 -14.33288 -14.19444 -14.00183 -13.61418 -13.42012 -13.17163 -12.89431 -12.84036 -12.57811 -12.38804 -12.32591 -12.25413 -11.73259 -11.59877 -11.47708 -11.39815 -11.13130 -11.07805 -10.76941 -10.37247 -10.31413 -9.98959 -9.93394 -9.85438 -9.35588 -9.07806 -8.79189 -7.83293 -7.33124 -6.30163 -4.36634 1.40880 1.87426 2.63222 2.66994 2.99088 3.15358 3.27686 3.34833 3.42739 4.23867 4.28346 4.39285 4.76630 4.91903 4.93976 4.99449 5.04858 5.11623 5.14620 5.27133 5.40379 5.52886 5.58727 5.64629 5.67525 5.73273 5.86227 5.87664 5.92155 5.92537 5.97191 6.07134 6.27366 6.41787 6.59442 6.72747 6.81233 6.86311 6.93089 7.13659 7.28518 7.41425 8.11070 8.16771 8.28865 8.56167 8.78027 9.28448 10.81177 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.004918 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.554699 B = 5692.213690 C = 7462.195438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.365 6.365 4 C 0.453 3.547 5 O -0.504 6.504 6 C -0.112 4.112 7 C 0.207 3.793 8 H 0.074 0.926 9 C -0.539 4.539 10 H 0.085 0.915 11 C 0.094 3.906 12 N -0.876 5.876 13 Si 0.854 3.146 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.251 1.251 17 O -0.297 6.297 18 C 0.516 3.484 19 N -0.524 5.524 20 C 0.089 3.911 21 C -0.085 4.085 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.073 4.073 25 C -0.110 4.110 26 C 0.038 3.962 27 N -0.601 5.601 28 H 0.418 0.582 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.271 0.729 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -12.999 6.346 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.283 6.283 4 C 0.296 3.704 5 O -0.390 6.390 6 C -0.150 4.150 7 C 0.152 3.848 8 H 0.092 0.908 9 C -0.576 4.576 10 H 0.103 0.897 11 C -0.113 4.113 12 N -0.511 5.511 13 Si 0.680 3.320 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.175 1.175 17 O -0.199 6.199 18 C 0.213 3.787 19 N -0.262 5.262 20 C -0.030 4.030 21 C -0.105 4.105 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.076 4.076 25 C -0.167 4.167 26 C -0.069 4.069 27 N -0.223 5.223 28 H 0.257 0.743 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.691 -12.726 5.530 14.134 hybrid contribution -0.410 -0.605 0.252 0.773 sum -3.101 -13.330 5.783 14.858 Atomic orbital electron populations 1.21788 0.93007 1.02548 1.03428 1.22924 0.95058 0.81313 1.02284 1.86565 1.25617 1.31511 1.84566 1.24644 0.79904 0.93952 0.71903 1.90650 1.60191 1.43257 1.44925 1.22319 0.97071 0.89204 1.06379 1.20503 0.87452 0.95090 0.81732 0.90833 1.21057 1.43427 0.97819 0.95252 0.89675 1.24816 0.93356 0.94666 0.98416 1.69857 1.39765 1.16874 1.24626 0.87208 0.79386 0.82103 0.83321 1.19486 1.20326 1.17486 1.85725 1.31525 1.62626 1.40068 1.20592 0.87562 0.88325 0.82206 1.70995 1.06766 1.23808 1.24618 1.18950 0.95191 0.98170 0.90655 1.20192 0.92146 0.98511 0.99637 1.20729 0.98815 1.00189 0.94627 1.20542 0.97804 1.02475 0.94054 1.18632 0.93814 0.99453 0.95686 1.20702 1.02556 1.01411 0.92019 1.18370 0.89940 1.03032 0.95573 1.42386 1.21046 1.47680 1.11223 0.74342 0.90637 0.91563 0.91551 0.91581 0.91617 0.86941 0.86540 0.91934 0.85635 0.85899 0.85974 0.91504 0.91275 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -6.08 10.22 -39.27 -0.40 -6.48 16 4 C 0.45 8.86 7.84 36.01 0.28 9.14 16 5 O -0.50 -11.12 15.18 -23.92 -0.36 -11.49 16 6 C -0.11 -2.26 5.26 -27.88 -0.15 -2.41 16 7 C 0.21 5.00 1.09 -27.89 -0.03 4.97 16 8 H 0.07 1.94 4.62 -51.93 -0.24 1.70 16 9 C -0.54 -14.70 9.21 -34.44 -0.32 -15.02 16 10 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 11 C 0.09 2.60 5.47 -17.82 -0.10 2.50 16 12 N -0.88 -25.66 13.96 55.43 0.77 -24.89 16 13 Si 0.85 20.61 25.90 -169.99 -4.40 16.21 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.25 -6.17 6.14 56.52 0.35 -5.82 16 17 O -0.30 -6.90 9.09 -31.42 -0.29 -7.18 16 18 C 0.52 11.70 8.82 -88.93 -0.78 10.92 16 19 N -0.52 -12.71 10.11 -12.24 -0.12 -12.83 16 20 C 0.09 1.86 7.22 -84.68 -0.61 1.25 16 21 C -0.09 -1.49 10.10 -39.24 -0.40 -1.89 16 22 C -0.12 -1.73 10.01 -39.61 -0.40 -2.12 16 23 C -0.13 -1.71 9.69 -39.51 -0.38 -2.09 16 24 C -0.07 -1.06 5.89 -104.57 -0.62 -1.68 16 25 C -0.11 -1.19 10.02 36.01 0.36 -0.83 16 26 C 0.04 0.70 6.96 -83.87 -0.58 0.11 16 27 N -0.60 -11.00 6.26 -11.91 -0.07 -11.08 16 28 H 0.42 6.08 8.96 -40.82 -0.37 5.72 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 33 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 35 H 0.12 2.29 6.40 -51.93 -0.33 1.95 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 37 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 38 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -33.49 358.80 -8.19 -41.68 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.62 Total: 7.84 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -3.11 Total: 2.80 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.58 Total: -48.80 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.05 Total: -25.15 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.40 Total: 16.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.49 -8.19 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227270905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.742 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds