Wall clock time and date at job start Tue Mar 31 2020 13:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47137 * 2 1 4 4 C 1.34236 * 117.00183 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00059 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47086 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46829 * 54.48426 * 7 6 4 9 9 C 1.50690 * 109.47071 * 174.48823 * 7 6 4 10 10 H 1.08003 * 120.00387 * 94.99613 * 9 7 6 11 11 C 1.37881 * 120.00181 * 274.99158 * 9 7 6 12 12 N 1.31506 * 120.00361 * 185.02318 * 11 9 7 13 13 Si 1.86803 * 119.99506 * 5.02678 * 11 9 7 14 14 H 1.48504 * 109.47261 * 84.82577 * 13 11 9 15 15 H 1.48498 * 109.46991 * 204.82274 * 13 11 9 16 16 H 1.48493 * 109.47258 * 324.82413 * 13 11 9 17 17 O 1.42898 * 109.47107 * 294.48798 * 7 6 4 18 18 C 1.35278 * 117.00108 * 149.99616 * 17 7 6 19 19 N 1.30755 * 125.03341 * 359.97438 * 18 17 7 20 20 C 1.35899 * 109.62589 * 180.02562 * 19 18 17 21 21 C 1.39707 * 133.44551 * 180.02562 * 20 19 18 22 22 C 1.37677 * 119.77520 * 179.38038 * 21 20 19 23 23 C 1.38720 * 120.50011 * 0.46473 * 22 21 20 24 24 C 1.37934 * 120.43521 * 359.71737 * 23 22 21 25 25 C 1.50700 * 120.07475 * 179.97438 * 24 23 22 26 26 C 1.38689 * 119.84541 * 359.97438 * 24 23 22 27 27 N 1.36381 * 125.03317 * 179.97438 * 18 17 7 28 28 H 0.97000 * 126.36600 * 359.94785 * 27 18 17 29 29 H 1.09011 * 109.46790 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47027 * 299.99533 * 1 2 3 31 31 H 1.08991 * 109.47165 * 59.99904 * 1 2 3 32 32 H 1.09005 * 109.47075 * 239.99757 * 2 1 3 33 33 H 1.09000 * 109.47161 * 120.00712 * 2 1 3 34 34 H 1.09004 * 109.46693 * 59.99833 * 6 4 3 35 35 H 1.08997 * 109.46941 * 299.99804 * 6 4 3 36 36 H 0.97001 * 120.00224 * 180.02562 * 12 11 9 37 37 H 1.07999 * 120.11313 * 359.96871 * 21 20 19 38 38 H 1.08003 * 119.74684 * 180.18652 * 22 21 20 39 39 H 1.08000 * 119.78193 * 179.69342 * 23 22 21 40 40 H 1.09005 * 109.47094 * 270.02187 * 25 24 23 41 41 H 1.08999 * 109.47592 * 30.02274 * 25 24 23 42 42 H 1.08995 * 109.47062 * 150.02548 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8369 9 6 6.0242 4.2433 -0.1360 10 1 6.3105 4.7981 0.7453 11 6 6.1855 4.8034 -1.3856 12 7 6.7779 5.9707 -1.5116 13 14 5.5623 3.9040 -2.8996 14 1 4.1232 4.2108 -3.1003 15 1 6.3330 4.3453 -4.0897 16 1 5.7351 2.4411 -2.7125 17 8 5.8952 2.2742 1.2257 18 6 7.0487 1.5686 1.1858 19 7 7.7781 1.3825 0.1167 20 6 8.8648 0.6294 0.4310 21 6 9.9448 0.1445 -0.3108 22 6 10.9211 -0.6014 0.3105 23 6 10.8359 -0.8834 1.6661 24 6 9.7741 -0.4153 2.4117 25 6 9.6893 -0.7270 3.8837 26 6 8.7847 0.3430 1.8037 27 7 7.6229 0.9460 2.2547 28 1 7.2827 0.9316 3.1630 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5851 3.4690 0.8905 35 1 3.5844 3.4700 -0.8895 36 1 6.8910 6.3649 -2.3906 37 1 10.0185 0.3620 -1.3661 38 1 11.7574 -0.9734 -0.2628 39 1 11.6058 -1.4737 2.1406 40 1 9.1427 -1.6592 4.0268 41 1 10.6948 -0.8290 4.2921 42 1 9.1691 0.0817 4.3969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227270905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:15 Heat of formation + Delta-G solvation = -77.690976 kcal Electronic energy + Delta-G solvation = -26730.899225 eV Core-core repulsion = 22869.351566 eV Total energy + Delta-G solvation = -3861.547659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.05053 -41.62155 -39.80545 -38.04642 -37.52112 -35.22700 -34.73448 -33.34050 -32.42226 -32.12871 -29.70913 -28.45395 -27.64076 -24.92384 -23.90191 -23.36019 -22.72483 -22.00194 -21.37293 -19.67081 -19.40155 -18.61414 -18.23040 -18.03341 -17.58180 -17.19477 -16.89506 -16.24951 -15.77501 -15.53406 -15.29585 -14.98596 -14.84557 -14.61755 -14.39576 -14.19984 -13.84840 -13.77336 -13.59608 -13.33531 -13.26349 -12.92612 -12.71513 -12.64693 -12.52645 -12.40835 -12.28869 -12.04574 -11.89468 -11.63816 -11.56019 -11.45570 -11.11333 -10.88120 -10.76587 -9.11783 -8.78746 -8.45529 -6.56120 0.09869 0.60130 1.08414 1.12251 1.20813 1.30754 1.40074 1.62945 1.91525 2.21593 2.84939 2.93451 2.94643 3.39833 3.70217 3.88691 3.96209 4.05617 4.09404 4.12680 4.25620 4.28558 4.31013 4.37823 4.44764 4.54701 4.79250 4.79989 4.83622 4.84881 4.90149 4.95244 5.02596 5.10789 5.19494 5.27699 5.34872 5.42170 5.59714 5.63030 5.80855 6.04360 6.13962 6.48789 6.65042 6.69509 6.99649 7.14695 8.70029 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.004918 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.554699 B = 5692.213690 C = 7462.195438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.533 6.533 6 C -0.110 4.110 7 C 0.217 3.783 8 H 0.050 0.950 9 C -0.540 4.540 10 H 0.045 0.955 11 C 0.048 3.952 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.232 1.232 15 H -0.276 1.276 16 H -0.264 1.264 17 O -0.302 6.302 18 C 0.483 3.517 19 N -0.570 5.570 20 C 0.036 3.964 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.114 4.114 24 C -0.074 4.074 25 C -0.108 4.108 26 C 0.028 3.972 27 N -0.585 5.585 28 H 0.433 0.567 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.274 0.726 37 H 0.120 0.880 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -15.790 7.288 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.422 6.422 6 C -0.148 4.148 7 C 0.161 3.839 8 H 0.068 0.932 9 C -0.578 4.578 10 H 0.063 0.937 11 C -0.154 4.154 12 N -0.559 5.559 13 Si 0.731 3.269 14 H -0.155 1.155 15 H -0.201 1.201 16 H -0.189 1.189 17 O -0.206 6.206 18 C 0.179 3.821 19 N -0.309 5.309 20 C -0.081 4.081 21 C -0.132 4.132 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.077 4.077 25 C -0.165 4.165 26 C -0.079 4.079 27 N -0.209 5.209 28 H 0.274 0.726 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.663 -15.531 6.505 17.048 hybrid contribution -0.246 0.099 0.070 0.275 sum -2.909 -15.432 6.575 17.025 Atomic orbital electron populations 1.21818 0.89706 1.04506 1.03894 1.23341 0.97563 0.79381 1.02293 1.86535 1.23464 1.33798 1.83804 1.24225 0.80803 0.92992 0.71320 1.90648 1.61156 1.43994 1.46438 1.22072 0.94399 0.90440 1.07854 1.20204 0.89623 0.92439 0.81620 0.93222 1.21124 1.43637 0.99016 0.93994 0.93703 1.25519 0.93456 0.95236 1.01217 1.69972 1.41711 1.18630 1.25549 0.86356 0.81025 0.79858 0.79624 1.15542 1.20100 1.18892 1.85662 1.32281 1.63289 1.39322 1.20671 0.87851 0.89993 0.83581 1.70795 1.08461 1.25171 1.26469 1.19446 0.95806 0.99937 0.92891 1.20467 0.92775 1.00179 0.99802 1.21219 0.98226 0.97746 0.95483 1.21178 0.97736 1.00886 0.93556 1.19222 0.92655 0.97840 0.97986 1.20793 1.04592 1.02042 0.89055 1.18800 0.90461 1.03745 0.94849 1.42208 1.20839 1.46793 1.11020 0.72569 0.87894 0.90978 0.91191 0.91827 0.91536 0.84932 0.85621 0.91629 0.86152 0.81999 0.81229 0.89993 0.88487 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 10.29 71.98 0.74 -1.61 16 2 C 0.05 1.20 6.19 71.98 0.45 1.65 16 3 O -0.36 -11.54 10.22 -51.47 -0.53 -12.07 16 4 C 0.46 18.10 7.84 71.24 0.56 18.65 16 5 O -0.53 -24.02 15.18 26.91 0.41 -23.61 16 6 C -0.11 -4.50 5.26 29.85 0.16 -4.35 16 7 C 0.22 10.93 1.09 29.84 0.03 10.96 16 8 H 0.05 2.76 4.62 -2.39 -0.01 2.74 16 9 C -0.54 -31.16 9.21 25.60 0.24 -30.93 16 10 H 0.04 2.88 8.06 -2.91 -0.02 2.85 16 11 C 0.05 2.75 5.47 84.66 0.46 3.22 16 12 N -0.92 -56.29 13.96 21.45 0.30 -55.99 16 13 Si 0.91 43.62 25.90 68.60 1.78 45.40 16 14 H -0.23 -9.70 7.11 99.48 0.71 -8.99 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.26 -13.21 6.14 99.48 0.61 -12.60 16 17 O -0.30 -14.82 9.09 -72.35 -0.66 -15.48 16 18 C 0.48 23.15 8.82 179.76 1.58 24.74 16 19 N -0.57 -29.41 10.11 -306.48 -3.10 -32.51 16 20 C 0.04 1.58 7.22 39.41 0.28 1.86 16 21 C -0.11 -3.98 10.10 22.49 0.23 -3.76 16 22 C -0.11 -2.70 10.01 22.25 0.22 -2.47 16 23 C -0.11 -2.54 9.69 22.31 0.22 -2.32 16 24 C -0.07 -1.96 5.89 -19.83 -0.12 -2.08 16 25 C -0.11 -1.92 10.02 71.24 0.71 -1.20 16 26 C 0.03 1.03 6.96 38.74 0.27 1.30 16 27 N -0.58 -22.06 6.26 -302.48 -1.89 -23.95 16 28 H 0.43 12.82 8.96 -92.71 -0.83 11.99 16 29 H 0.10 1.17 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.64 8.13 -2.38 -0.02 1.62 16 33 H 0.07 1.67 8.13 -2.39 -0.02 1.65 16 34 H 0.13 4.82 8.14 -2.38 -0.02 4.81 16 35 H 0.13 4.87 6.40 -2.39 -0.02 4.85 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 38 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 39 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.10 1.22 8.09 -2.39 -0.02 1.20 16 42 H 0.06 1.03 8.09 -2.39 -0.02 1.01 16 Total: -1.00 -79.65 358.80 2.47 -77.18 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.13 Total: 27.37 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.04 Total: 13.66 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.69 Total: -112.46 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -0.77 Total: -51.16 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.78 Total: 45.40 kcal Total: -79.65 2.47 -77.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227270905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.509 kcal (2) G-P(sol) polarization free energy of solvation -79.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds