Wall clock time and date at job start Tue Mar 31 2020 13:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.46627 * 2 1 4 4 C 1.34235 * 116.99846 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99798 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00170 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47308 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47320 * 55.00153 * 7 6 4 9 9 C 1.50703 * 109.47250 * 175.00537 * 7 6 4 10 10 H 1.08005 * 119.99373 * 240.00420 * 9 7 6 11 11 C 1.37876 * 120.00177 * 59.99771 * 9 7 6 12 12 N 1.31509 * 119.99855 * 179.97438 * 11 9 7 13 13 Si 1.86795 * 119.99706 * 0.02562 * 11 9 7 14 14 H 1.48494 * 109.47037 * 269.99340 * 13 11 9 15 15 H 1.48495 * 109.47400 * 30.00071 * 13 11 9 16 16 H 1.48507 * 109.46724 * 149.99744 * 13 11 9 17 17 O 1.42903 * 109.47536 * 295.00421 * 7 6 4 18 18 C 1.35947 * 117.00400 * 156.16744 * 17 7 6 19 19 C 1.39230 * 119.83313 * 185.50359 * 18 17 7 20 20 C 1.36546 * 120.61352 * 179.97438 * 19 18 17 21 21 C 1.39765 * 119.95439 * 0.02562 * 20 19 18 22 22 N 1.35873 * 133.50458 * 180.02562 * 21 20 19 23 23 C 1.30069 * 109.64356 * 179.97438 * 22 21 20 24 24 C 1.50704 * 124.95418 * 180.02562 * 23 22 21 25 25 N 1.36140 * 110.09154 * 0.02562 * 23 22 21 26 26 H 0.96998 * 126.35407 * 180.02562 * 25 23 22 27 27 C 1.38054 * 107.29626 * 359.97438 * 25 23 22 28 28 C 1.38298 * 119.83194 * 5.23072 * 18 17 7 29 29 H 1.09009 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47196 * 299.99602 * 1 2 3 31 31 H 1.09004 * 109.47692 * 59.99624 * 1 2 3 32 32 H 1.09002 * 109.46933 * 240.01119 * 2 1 3 33 33 H 1.08992 * 109.47599 * 119.99967 * 2 1 3 34 34 H 1.09010 * 109.46846 * 60.00659 * 6 4 3 35 35 H 1.08998 * 109.47600 * 300.00832 * 6 4 3 36 36 H 0.97006 * 120.00064 * 180.02562 * 12 11 9 37 37 H 1.07992 * 119.69159 * 0.02562 * 19 18 17 38 38 H 1.07992 * 120.02156 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47243 * 269.96188 * 24 23 22 40 40 H 1.09003 * 109.46629 * 29.95532 * 24 23 22 41 41 H 1.08992 * 109.47020 * 149.95570 * 24 23 22 42 42 H 1.08004 * 120.18070 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0806 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 5.4484 2.8576 0.0001 8 1 5.7805 2.2496 -0.8414 9 6 6.0241 4.2447 -0.1241 10 1 6.6589 4.4928 -0.9620 11 6 5.7403 5.1971 0.8316 12 7 6.2431 6.4074 0.7234 13 14 4.6429 4.7677 2.2809 14 1 3.2281 5.0543 1.9325 15 1 4.7909 3.3258 2.6038 16 1 5.0373 5.5817 3.4587 17 8 5.8944 2.2645 1.2214 18 6 7.1151 1.6664 1.2075 19 6 7.5586 0.9711 2.3292 20 6 8.7817 0.3640 2.3325 21 6 9.6007 0.4384 1.2024 22 7 10.8346 -0.0482 0.9078 23 6 11.1653 0.3010 -0.3007 24 6 12.4635 -0.0556 -0.9778 25 7 10.1675 1.0356 -0.8648 26 1 10.1668 1.4147 -1.7576 27 6 9.1563 1.1400 0.0693 28 6 7.9079 1.7471 0.0772 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.5842 3.4702 0.8896 35 1 3.5850 3.4693 -0.8904 36 1 6.0438 7.0774 1.3960 37 1 6.9290 0.9106 3.2046 38 1 9.1159 -0.1732 3.2076 39 1 13.2033 0.7191 -0.7763 40 1 12.8233 -1.0102 -0.5937 41 1 12.3030 -0.1339 -2.0530 42 1 7.5598 2.2837 -0.7931 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228325547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:40 Heat of formation + Delta-G solvation = -50.283204 kcal Electronic energy + Delta-G solvation = -26790.939629 eV Core-core repulsion = 22930.580460 eV Total energy + Delta-G solvation = -3860.359169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61720 -40.14528 -38.67880 -36.41916 -35.61570 -33.15681 -32.58191 -31.87082 -31.20381 -30.60087 -29.15831 -26.84803 -26.27958 -23.31896 -22.60800 -21.82836 -21.13195 -20.48916 -20.16953 -18.20451 -17.43222 -17.11661 -16.51967 -16.38932 -16.05344 -15.57892 -15.12494 -14.74254 -14.43052 -14.17034 -13.67598 -13.55591 -13.33017 -13.07615 -12.89962 -12.84807 -12.74109 -12.57691 -12.50470 -12.19631 -12.01373 -11.66397 -11.50638 -11.24348 -10.87685 -10.76860 -10.55612 -10.49138 -10.35379 -10.18334 -9.88439 -9.55740 -9.21877 -9.08870 -8.81791 -7.85333 -6.93799 -6.37079 -4.50078 1.57460 2.12823 2.66184 2.99766 3.14144 3.22185 3.26140 3.31706 3.44745 4.21695 4.30057 4.44318 4.48586 4.93419 4.96272 4.99587 5.02500 5.13527 5.28583 5.29973 5.44114 5.54025 5.65791 5.69539 5.75151 5.77408 5.84383 5.87337 5.93745 5.96368 5.98820 6.08713 6.37996 6.48594 6.56832 6.76476 6.84579 6.92557 7.14484 7.22583 7.34306 7.74184 8.05844 8.19343 8.27039 8.45877 8.65129 9.25017 10.73058 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011769 B = 0.004528 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.509243 B = 6181.580079 C = 7576.091846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.501 6.501 6 C -0.110 4.110 7 C 0.187 3.813 8 H 0.057 0.943 9 C -0.551 4.551 10 H 0.084 0.916 11 C 0.093 3.907 12 N -0.874 5.874 13 Si 0.859 3.141 14 H -0.277 1.277 15 H -0.222 1.222 16 H -0.290 1.290 17 O -0.307 6.307 18 C 0.195 3.805 19 C -0.159 4.159 20 C -0.038 4.038 21 C -0.009 4.009 22 N -0.487 5.487 23 C 0.251 3.749 24 C -0.069 4.069 25 N -0.603 5.603 26 H 0.418 0.582 27 C 0.094 3.906 28 C -0.205 4.205 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.270 0.730 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -11.016 -3.286 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.300 3.700 5 O -0.387 6.387 6 C -0.147 4.147 7 C 0.133 3.867 8 H 0.074 0.926 9 C -0.588 4.588 10 H 0.102 0.898 11 C -0.114 4.114 12 N -0.509 5.509 13 Si 0.687 3.313 14 H -0.204 1.204 15 H -0.146 1.146 16 H -0.217 1.217 17 O -0.220 6.220 18 C 0.145 3.855 19 C -0.179 4.179 20 C -0.057 4.057 21 C -0.125 4.125 22 N -0.208 5.208 23 C -0.016 4.016 24 C -0.128 4.128 25 N -0.217 5.217 26 H 0.256 0.744 27 C -0.016 4.016 28 C -0.227 4.227 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.141 0.859 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.592 -11.636 -2.418 11.899 hybrid contribution -1.014 0.751 -0.432 1.334 sum -1.606 -10.885 -2.851 11.366 Atomic orbital electron populations 1.21793 0.93065 1.02551 1.03417 1.22926 0.95025 0.81213 1.02344 1.86559 1.25628 1.31585 1.84599 1.24422 0.79895 0.93712 0.71987 1.90639 1.60145 1.43123 1.44807 1.22203 0.97060 0.89463 1.05982 1.20237 0.87987 0.94634 0.83842 0.92551 1.21168 1.33190 0.92573 1.11838 0.89789 1.25008 0.94673 0.94347 0.97365 1.69891 1.42419 1.03428 1.35138 0.87343 0.79809 0.81608 0.82504 1.20417 1.14553 1.21672 1.86409 1.29838 1.67161 1.38622 1.18509 0.85822 0.89054 0.92081 1.20012 0.97110 1.02387 0.98422 1.19623 0.91881 0.98546 0.95679 1.18809 0.93492 1.04655 0.95546 1.70211 1.13115 1.25015 1.12484 1.23321 0.92528 0.95147 0.90606 1.20238 0.89961 1.03455 0.99153 1.42911 1.15345 1.47513 1.15914 0.74414 1.18596 0.91292 1.01239 0.90437 1.19989 0.93006 1.08404 1.01292 0.90609 0.91576 0.91587 0.91552 0.91491 0.88553 0.85909 0.92010 0.85359 0.85566 0.89971 0.89119 0.90713 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -6.09 10.22 -39.27 -0.40 -6.49 16 4 C 0.46 8.76 7.84 36.00 0.28 9.04 16 5 O -0.50 -10.60 15.17 -24.05 -0.36 -10.96 16 6 C -0.11 -2.21 4.97 -27.89 -0.14 -2.34 16 7 C 0.19 4.22 1.32 -27.88 -0.04 4.18 16 8 H 0.06 1.24 6.18 -51.93 -0.32 0.92 16 9 C -0.55 -14.17 8.50 -34.44 -0.29 -14.47 16 10 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 11 C 0.09 2.50 5.45 -17.82 -0.10 2.40 16 12 N -0.87 -24.98 13.96 55.43 0.77 -24.21 16 13 Si 0.86 20.25 23.86 -169.99 -4.06 16.19 16 14 H -0.28 -6.18 6.91 56.52 0.39 -5.79 16 15 H -0.22 -5.15 5.30 56.52 0.30 -4.85 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 O -0.31 -7.16 5.88 -34.00 -0.20 -7.36 16 18 C 0.19 4.30 6.59 -39.19 -0.26 4.04 16 19 C -0.16 -3.14 9.90 -39.82 -0.39 -3.53 16 20 C -0.04 -0.70 10.04 -39.62 -0.40 -1.10 16 21 C -0.01 -0.18 7.23 -84.66 -0.61 -0.79 16 22 N -0.49 -8.96 11.28 -8.20 -0.09 -9.06 16 23 C 0.25 3.78 8.08 -154.76 -1.25 2.53 16 24 C -0.07 -0.65 10.51 36.01 0.38 -0.27 16 25 N -0.60 -9.42 6.24 -7.99 -0.05 -9.46 16 26 H 0.42 5.08 8.96 -40.82 -0.37 4.71 16 27 C 0.09 1.84 7.30 -84.00 -0.61 1.23 16 28 C -0.20 -4.33 8.70 -39.34 -0.34 -4.68 16 29 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 34 H 0.10 2.02 3.42 -51.92 -0.18 1.84 16 35 H 0.12 2.19 8.14 -51.93 -0.42 1.76 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.14 2.90 5.64 -52.48 -0.30 2.60 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -33.14 348.75 -7.78 -40.92 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.48 Total: 8.99 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -3.16 Total: -3.81 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.63 Total: -42.73 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.97 Total: -24.82 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.06 Total: 16.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.14 -7.78 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228325547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.368 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds