Wall clock time and date at job start Tue Mar 31 2020 13:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.46627 * 2 1 4 4 C 1.34235 * 116.99846 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99798 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00170 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47308 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47320 * 55.00153 * 7 6 4 9 9 C 1.50703 * 109.47250 * 175.00537 * 7 6 4 10 10 H 1.08005 * 119.99373 * 240.00420 * 9 7 6 11 11 C 1.37876 * 120.00177 * 59.99771 * 9 7 6 12 12 N 1.31509 * 119.99855 * 179.97438 * 11 9 7 13 13 Si 1.86795 * 119.99706 * 0.02562 * 11 9 7 14 14 H 1.48494 * 109.47037 * 269.99340 * 13 11 9 15 15 H 1.48495 * 109.47400 * 30.00071 * 13 11 9 16 16 H 1.48507 * 109.46724 * 149.99744 * 13 11 9 17 17 O 1.42903 * 109.47536 * 295.00421 * 7 6 4 18 18 C 1.35947 * 117.00400 * 156.16744 * 17 7 6 19 19 C 1.39230 * 119.83313 * 185.50359 * 18 17 7 20 20 C 1.36546 * 120.61352 * 179.97438 * 19 18 17 21 21 C 1.39765 * 119.95439 * 0.02562 * 20 19 18 22 22 N 1.35873 * 133.50458 * 180.02562 * 21 20 19 23 23 C 1.30069 * 109.64356 * 179.97438 * 22 21 20 24 24 C 1.50704 * 124.95418 * 180.02562 * 23 22 21 25 25 N 1.36140 * 110.09154 * 0.02562 * 23 22 21 26 26 H 0.96998 * 126.35407 * 180.02562 * 25 23 22 27 27 C 1.38054 * 107.29626 * 359.97438 * 25 23 22 28 28 C 1.38298 * 119.83194 * 5.23072 * 18 17 7 29 29 H 1.09009 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47196 * 299.99602 * 1 2 3 31 31 H 1.09004 * 109.47692 * 59.99624 * 1 2 3 32 32 H 1.09002 * 109.46933 * 240.01119 * 2 1 3 33 33 H 1.08992 * 109.47599 * 119.99967 * 2 1 3 34 34 H 1.09010 * 109.46846 * 60.00659 * 6 4 3 35 35 H 1.08998 * 109.47600 * 300.00832 * 6 4 3 36 36 H 0.97006 * 120.00064 * 180.02562 * 12 11 9 37 37 H 1.07992 * 119.69159 * 0.02562 * 19 18 17 38 38 H 1.07992 * 120.02156 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47243 * 269.96188 * 24 23 22 40 40 H 1.09003 * 109.46629 * 29.95532 * 24 23 22 41 41 H 1.08992 * 109.47020 * 149.95570 * 24 23 22 42 42 H 1.08004 * 120.18070 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0806 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 5.4484 2.8576 0.0001 8 1 5.7805 2.2496 -0.8414 9 6 6.0241 4.2447 -0.1241 10 1 6.6589 4.4928 -0.9620 11 6 5.7403 5.1971 0.8316 12 7 6.2431 6.4074 0.7234 13 14 4.6429 4.7677 2.2809 14 1 3.2281 5.0543 1.9325 15 1 4.7909 3.3258 2.6038 16 1 5.0373 5.5817 3.4587 17 8 5.8944 2.2645 1.2214 18 6 7.1151 1.6664 1.2075 19 6 7.5586 0.9711 2.3292 20 6 8.7817 0.3640 2.3325 21 6 9.6007 0.4384 1.2024 22 7 10.8346 -0.0482 0.9078 23 6 11.1653 0.3010 -0.3007 24 6 12.4635 -0.0556 -0.9778 25 7 10.1675 1.0356 -0.8648 26 1 10.1668 1.4147 -1.7576 27 6 9.1563 1.1400 0.0693 28 6 7.9079 1.7471 0.0772 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.5842 3.4702 0.8896 35 1 3.5850 3.4693 -0.8904 36 1 6.0438 7.0774 1.3960 37 1 6.9290 0.9106 3.2046 38 1 9.1159 -0.1732 3.2076 39 1 13.2033 0.7191 -0.7763 40 1 12.8233 -1.0102 -0.5937 41 1 12.3030 -0.1339 -2.0530 42 1 7.5598 2.2837 -0.7931 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228325547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:39 Heat of formation + Delta-G solvation = -71.166128 kcal Electronic energy + Delta-G solvation = -26791.845181 eV Core-core repulsion = 22930.580460 eV Total energy + Delta-G solvation = -3861.264720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.00204 -41.62703 -40.29394 -37.83783 -37.14709 -35.04179 -33.97985 -33.33231 -32.43921 -31.81300 -30.61134 -28.44822 -27.82706 -24.72636 -24.00220 -23.29368 -22.61378 -21.80177 -21.71676 -19.84736 -18.98258 -18.61283 -18.06321 -17.80600 -17.54882 -17.21547 -16.51160 -16.37498 -15.95578 -15.49964 -15.28473 -15.02238 -14.79292 -14.58480 -14.36039 -14.04424 -13.91462 -13.72251 -13.61863 -13.52453 -13.12221 -12.93127 -12.89637 -12.61033 -12.48932 -12.42552 -12.30702 -12.20593 -11.71662 -11.52498 -11.41932 -11.11267 -10.95678 -10.88529 -10.74735 -9.32477 -8.50503 -8.44176 -6.59969 0.12397 0.59531 1.14286 1.26767 1.38272 1.57847 1.67636 1.86499 2.00192 2.28849 2.57634 2.93180 3.04345 3.26954 3.72677 3.76047 3.99635 4.05686 4.09407 4.16890 4.20986 4.29610 4.34587 4.35628 4.49052 4.57112 4.65634 4.73605 4.75699 4.82394 4.92066 4.92511 5.04600 5.11844 5.13089 5.26683 5.35836 5.40267 5.44420 5.62258 5.81451 6.03691 6.47097 6.53812 6.72512 6.75284 6.96053 7.19342 8.69489 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011769 B = 0.004528 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.509243 B = 6181.580079 C = 7576.091846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.364 6.364 4 C 0.466 3.534 5 O -0.525 6.525 6 C -0.111 4.111 7 C 0.195 3.805 8 H 0.053 0.947 9 C -0.546 4.546 10 H 0.050 0.950 11 C 0.049 3.951 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.253 1.253 15 H -0.218 1.218 16 H -0.299 1.299 17 O -0.318 6.318 18 C 0.159 3.841 19 C -0.166 4.166 20 C -0.036 4.036 21 C -0.022 4.022 22 N -0.519 5.519 23 C 0.271 3.729 24 C -0.068 4.068 25 N -0.596 5.596 26 H 0.433 0.567 27 C 0.073 3.927 28 C -0.213 4.213 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.271 0.729 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 -12.951 -3.339 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.281 6.281 4 C 0.310 3.690 5 O -0.413 6.413 6 C -0.148 4.148 7 C 0.140 3.860 8 H 0.071 0.929 9 C -0.583 4.583 10 H 0.068 0.932 11 C -0.153 4.153 12 N -0.558 5.558 13 Si 0.735 3.265 14 H -0.178 1.178 15 H -0.141 1.141 16 H -0.226 1.226 17 O -0.232 6.232 18 C 0.111 3.889 19 C -0.186 4.186 20 C -0.055 4.055 21 C -0.138 4.138 22 N -0.241 5.241 23 C 0.004 3.996 24 C -0.126 4.126 25 N -0.210 5.210 26 H 0.274 0.726 27 C -0.038 4.038 28 C -0.236 4.236 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.161 0.839 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.789 -13.580 -2.509 13.832 hybrid contribution -0.780 1.222 -0.557 1.553 sum -1.569 -12.358 -3.067 12.829 Atomic orbital electron populations 1.21825 0.90008 1.04477 1.03760 1.23334 0.97372 0.79286 1.02480 1.86532 1.23760 1.33931 1.83916 1.23992 0.80713 0.92765 0.71522 1.90634 1.60953 1.43676 1.46071 1.22047 0.95274 0.90683 1.06789 1.20032 0.89511 0.92476 0.83957 0.92865 1.21242 1.32281 0.94294 1.10482 0.93191 1.25670 0.95943 0.94048 0.99680 1.70002 1.44721 1.04634 1.36467 0.86545 0.79511 0.81234 0.79190 1.17808 1.14144 1.22641 1.86335 1.30651 1.67821 1.38360 1.18886 0.85838 0.90721 0.93443 1.20209 0.97846 1.02279 0.98259 1.19937 0.91212 0.97954 0.96406 1.19227 0.94319 1.04432 0.95860 1.70274 1.12683 1.26836 1.14353 1.24509 0.93319 0.92131 0.89689 1.20553 0.87069 1.04507 1.00516 1.43000 1.14514 1.47290 1.16218 0.72608 1.18660 0.91609 1.01714 0.91845 1.19937 0.93989 1.08811 1.00815 0.87860 0.91408 0.91058 0.91207 0.91710 0.88874 0.83947 0.91962 0.83802 0.82777 0.88038 0.87944 0.87645 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.29 71.98 0.74 -1.62 16 2 C 0.05 1.19 6.19 71.98 0.45 1.63 16 3 O -0.36 -11.55 10.22 -51.46 -0.53 -12.08 16 4 C 0.47 17.52 7.84 71.23 0.56 18.08 16 5 O -0.52 -22.11 15.17 27.04 0.41 -21.70 16 6 C -0.11 -4.40 4.97 29.84 0.15 -4.26 16 7 C 0.20 8.97 1.32 29.85 0.04 9.01 16 8 H 0.05 2.44 6.18 -2.39 -0.01 2.43 16 9 C -0.55 -29.15 8.50 25.60 0.22 -28.93 16 10 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 11 C 0.05 2.70 5.45 84.66 0.46 3.16 16 12 N -0.92 -54.39 13.96 21.45 0.30 -54.09 16 13 Si 0.91 42.09 23.86 68.60 1.64 43.73 16 14 H -0.25 -10.59 6.91 99.48 0.69 -9.90 16 15 H -0.22 -9.90 5.30 99.48 0.53 -9.37 16 16 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 17 O -0.32 -15.04 5.88 -79.16 -0.47 -15.51 16 18 C 0.16 7.21 6.59 22.52 0.15 7.35 16 19 C -0.17 -6.54 9.90 22.11 0.22 -6.33 16 20 C -0.04 -1.31 10.04 22.24 0.22 -1.09 16 21 C -0.02 -0.87 7.23 39.44 0.29 -0.59 16 22 N -0.52 -18.36 11.28 -179.84 -2.03 -20.38 16 23 C 0.27 7.56 8.08 137.90 1.11 8.67 16 24 C -0.07 -1.01 10.51 71.24 0.75 -0.27 16 25 N -0.60 -17.95 6.24 -179.20 -1.12 -19.06 16 26 H 0.43 10.00 8.96 -92.71 -0.83 9.17 16 27 C 0.07 2.86 7.30 38.85 0.28 3.14 16 28 C -0.21 -9.34 8.70 22.42 0.19 -9.15 16 29 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 33 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 34 H 0.09 3.79 3.42 -2.38 -0.01 3.78 16 35 H 0.14 4.98 8.14 -2.39 -0.02 4.96 16 36 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 37 H 0.14 5.07 8.06 -2.91 -0.02 5.04 16 38 H 0.15 4.63 8.06 -2.91 -0.02 4.60 16 39 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.12 5.54 5.64 -2.91 -0.02 5.52 16 Total: -1.00 -74.26 348.75 4.07 -70.18 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.04 Total: 30.08 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.83 Total: -1.17 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -2.85 Total: -93.54 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.58 Total: -49.29 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.64 Total: 43.73 kcal Total: -74.26 4.07 -70.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228325547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.981 kcal (2) G-P(sol) polarization free energy of solvation -74.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds