Wall clock time and date at job start Tue Mar 31 2020 13:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.47423 * 2 1 4 4 C 1.34229 * 117.00122 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99880 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00050 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47259 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46857 * 54.42833 * 7 6 4 9 9 C 1.50701 * 109.47234 * 174.43316 * 7 6 4 10 10 H 1.07998 * 119.99614 * 245.37217 * 9 7 6 11 11 C 1.37879 * 120.00009 * 65.37596 * 9 7 6 12 12 N 1.31512 * 119.99750 * 355.12797 * 11 9 7 13 13 Si 1.86798 * 120.00046 * 175.12931 * 11 9 7 14 14 H 1.48500 * 109.47275 * 94.99557 * 13 11 9 15 15 H 1.48498 * 109.47070 * 214.99930 * 13 11 9 16 16 H 1.48500 * 109.46704 * 334.99657 * 13 11 9 17 17 O 1.42901 * 109.47023 * 294.43573 * 7 6 4 18 18 C 1.35909 * 117.00257 * 155.28386 * 17 7 6 19 19 C 1.36453 * 120.37743 * 5.49260 * 18 17 7 20 20 C 1.40453 * 119.64379 * 179.78302 * 19 18 17 21 21 C 1.34912 * 120.35321 * 0.49953 * 20 19 18 22 22 N 1.36672 * 120.70349 * 359.75362 * 21 20 19 23 23 C 1.36788 * 132.54200 * 180.02562 * 22 21 20 24 24 C 1.35151 * 107.17397 * 179.97438 * 23 22 21 25 25 C 1.50698 * 125.69705 * 179.97438 * 24 23 22 26 26 N 1.33462 * 108.59864 * 0.02562 * 24 23 22 27 27 C 1.32544 * 109.15364 * 359.97438 * 26 24 23 28 28 H 1.08998 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46449 * 300.00187 * 1 2 3 30 30 H 1.08993 * 109.47219 * 59.99626 * 1 2 3 31 31 H 1.08995 * 109.46768 * 239.99979 * 2 1 3 32 32 H 1.09002 * 109.47070 * 120.00116 * 2 1 3 33 33 H 1.08999 * 109.46738 * 299.99992 * 6 4 3 34 34 H 1.09002 * 109.47196 * 59.99604 * 6 4 3 35 35 H 0.97003 * 120.00003 * 180.02562 * 12 11 9 36 36 H 1.07991 * 120.17533 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.82409 * 180.23089 * 20 19 18 38 38 H 1.07999 * 119.65075 * 179.77384 * 21 20 19 39 39 H 1.07995 * 126.40834 * 0.02562 * 23 22 21 40 40 H 1.09001 * 109.47424 * 270.01863 * 25 24 23 41 41 H 1.09001 * 109.47523 * 30.01729 * 25 24 23 42 42 H 1.08997 * 109.47361 * 150.01640 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4487 2.8572 -0.0001 8 1 5.7802 2.2415 -0.8363 9 6 6.0244 4.2431 -0.1374 10 1 6.5865 4.5093 -1.0203 11 6 5.8336 5.1712 0.8642 12 7 5.0698 4.8794 1.8943 13 14 6.6598 6.8432 0.7581 14 1 5.7194 7.8229 0.1572 15 1 7.0410 7.2943 2.1206 16 1 7.8760 6.7414 -0.0879 17 8 5.8953 2.2752 1.2262 18 6 7.1076 1.6609 1.2123 19 6 7.8943 1.7120 0.0985 20 6 9.1463 1.0756 0.1026 21 6 9.5681 0.4078 1.1964 22 7 8.7896 0.3430 2.3178 23 6 8.9703 -0.2522 3.5360 24 6 7.8684 0.0072 4.2744 25 6 7.6288 -0.4545 5.6887 26 7 7.0275 0.7396 3.5412 27 6 7.5653 0.9564 2.3493 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5845 3.4699 -0.8895 34 1 3.5853 3.4690 0.8904 35 1 4.9353 5.5324 2.5988 36 1 7.5573 2.2416 -0.7802 37 1 9.7730 1.1174 -0.7760 38 1 10.5313 -0.0805 1.1858 39 1 9.8325 -0.8221 3.8494 40 1 7.1316 -1.4244 5.6751 41 1 8.5828 -0.5427 6.2087 42 1 6.9989 0.2694 6.2055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228839699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:04 Heat of formation + Delta-G solvation = -37.309810 kcal Electronic energy + Delta-G solvation = -27130.538590 eV Core-core repulsion = 23270.741990 eV Total energy + Delta-G solvation = -3859.796600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18029 -39.79971 -38.28873 -36.35639 -35.82014 -33.42438 -32.01203 -31.57743 -31.16842 -30.19560 -27.93807 -26.95643 -26.20789 -23.42472 -22.71468 -22.10618 -21.39250 -20.08533 -19.83885 -17.84827 -17.20014 -16.75110 -16.19771 -16.01759 -15.77314 -15.39306 -15.31693 -14.77207 -14.65876 -13.89641 -13.74131 -13.54378 -13.26972 -12.92830 -12.81346 -12.56023 -12.45951 -12.10777 -12.04372 -11.74221 -11.59311 -11.45379 -11.23129 -11.17822 -11.03907 -10.88788 -10.82096 -10.55145 -10.11322 -9.88251 -9.66327 -9.46301 -9.42987 -8.90892 -8.72938 -7.94776 -6.74660 -6.24106 -4.45322 1.64552 1.89016 3.02778 3.07641 3.18382 3.27720 3.29832 3.34980 3.36873 4.22787 4.30314 4.34455 4.75237 5.03550 5.11152 5.11640 5.17974 5.30856 5.40384 5.50033 5.51350 5.59600 5.69920 5.83260 5.91005 5.92177 5.93524 6.04994 6.09434 6.25757 6.28272 6.36900 6.40548 6.61752 6.72081 6.90706 7.00701 7.13180 7.17544 7.28209 7.63294 7.67819 7.82207 8.33017 8.50954 8.55918 8.81376 9.32137 10.77272 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.006003 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.757634 B = 4663.150776 C = 6675.470600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.514 6.514 6 C -0.099 4.099 7 C 0.222 3.778 8 H 0.037 0.963 9 C -0.568 4.568 10 H 0.071 0.929 11 C 0.087 3.913 12 N -0.848 5.848 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.270 1.270 17 O -0.257 6.257 18 C 0.239 3.761 19 C -0.253 4.253 20 C -0.074 4.074 21 C -0.046 4.046 22 N -0.335 5.335 23 C -0.110 4.110 24 C 0.037 3.963 25 C -0.065 4.065 26 N -0.465 5.465 27 C 0.215 3.785 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.269 0.731 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.175 0.825 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 -8.546 -1.255 8.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.402 6.402 6 C -0.136 4.136 7 C 0.168 3.832 8 H 0.055 0.945 9 C -0.604 4.604 10 H 0.089 0.911 11 C -0.122 4.122 12 N -0.481 5.481 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.195 1.195 17 O -0.165 6.165 18 C 0.186 3.814 19 C -0.277 4.277 20 C -0.094 4.094 21 C -0.167 4.167 22 N -0.006 5.006 23 C -0.243 4.243 24 C -0.099 4.099 25 C -0.123 4.123 26 N -0.185 5.185 27 C -0.030 4.030 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.155 0.845 35 H 0.079 0.921 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.192 0.808 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.462 -8.490 -0.673 8.530 hybrid contribution 1.440 0.484 -0.433 1.580 sum 1.902 -8.007 -1.106 8.304 Atomic orbital electron populations 1.21776 0.93289 1.02314 1.03317 1.22856 0.94843 0.81765 1.02055 1.86566 1.26081 1.31016 1.84729 1.24871 0.79562 0.94274 0.71235 1.90604 1.60221 1.43617 1.45715 1.21832 0.96359 0.88263 1.07153 1.19932 0.88863 0.92954 0.81442 0.94518 1.21348 1.37441 0.95486 1.06139 0.91089 1.25049 0.93738 0.98700 0.94701 1.69887 1.34168 1.35081 1.09002 0.86537 0.80083 0.83413 0.77846 1.20255 1.20865 1.19489 1.86316 1.27730 1.63764 1.38724 1.17553 0.87777 0.87514 0.88597 1.20961 0.96269 1.10088 1.00425 1.20481 0.96378 0.95802 0.96748 1.21064 0.98466 1.10286 0.86851 1.42397 1.14243 1.33424 1.10565 1.22167 1.04465 1.11946 0.85682 1.20851 0.91501 1.00039 0.97509 1.20029 1.01884 1.01047 0.89312 1.70672 1.29275 1.17689 1.00875 1.19991 0.85179 1.02652 0.95163 0.90856 0.91566 0.91733 0.91926 0.91689 0.87625 0.84500 0.92084 0.83339 0.84190 0.83212 0.80797 0.91393 0.91432 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.29 37.16 0.38 -1.30 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.90 10.22 -39.25 -0.40 -7.30 16 4 C 0.46 9.86 7.84 36.00 0.28 10.15 16 5 O -0.51 -12.27 15.18 -23.92 -0.36 -12.63 16 6 C -0.10 -2.19 5.28 -27.89 -0.15 -2.34 16 7 C 0.22 5.37 1.34 -27.88 -0.04 5.34 16 8 H 0.04 0.86 6.14 -51.93 -0.32 0.54 16 9 C -0.57 -14.23 7.96 -34.44 -0.27 -14.50 16 10 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 11 C 0.09 2.24 5.26 -17.82 -0.09 2.15 16 12 N -0.85 -22.87 11.04 55.43 0.61 -22.26 16 13 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 O -0.26 -6.81 8.30 -33.32 -0.28 -7.09 16 18 C 0.24 5.83 6.63 -39.03 -0.26 5.57 16 19 C -0.25 -5.30 8.75 -39.39 -0.34 -5.64 16 20 C -0.07 -1.23 9.98 -39.93 -0.40 -1.63 16 21 C -0.05 -0.76 10.95 -16.57 -0.18 -0.94 16 22 N -0.33 -6.55 2.95 -62.53 -0.18 -6.74 16 23 C -0.11 -1.88 11.66 -16.44 -0.19 -2.07 16 24 C 0.04 0.70 7.06 -82.98 -0.59 0.12 16 25 C -0.06 -0.90 10.42 36.00 0.38 -0.53 16 26 N -0.47 -11.16 11.31 -8.92 -0.10 -11.26 16 27 C 0.21 5.10 7.77 -155.99 -1.21 3.89 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 32 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 33 H 0.11 2.09 8.14 -51.93 -0.42 1.66 16 34 H 0.14 3.35 6.47 -51.93 -0.34 3.01 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.15 3.07 5.68 -52.49 -0.30 2.77 16 37 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.17 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -32.78 359.08 -8.35 -41.13 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.57 Total: 6.30 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.46 Total: -0.62 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.33 Total: -40.25 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.04 Total: -27.02 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.78 -8.35 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228839699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.821 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds