Wall clock time and date at job start Tue Mar 31 2020 13:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.47423 * 2 1 4 4 C 1.34229 * 117.00122 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99880 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00050 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47259 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46857 * 54.42833 * 7 6 4 9 9 C 1.50701 * 109.47234 * 174.43316 * 7 6 4 10 10 H 1.07998 * 119.99614 * 245.37217 * 9 7 6 11 11 C 1.37879 * 120.00009 * 65.37596 * 9 7 6 12 12 N 1.31512 * 119.99750 * 355.12797 * 11 9 7 13 13 Si 1.86798 * 120.00046 * 175.12931 * 11 9 7 14 14 H 1.48500 * 109.47275 * 94.99557 * 13 11 9 15 15 H 1.48498 * 109.47070 * 214.99930 * 13 11 9 16 16 H 1.48500 * 109.46704 * 334.99657 * 13 11 9 17 17 O 1.42901 * 109.47023 * 294.43573 * 7 6 4 18 18 C 1.35909 * 117.00257 * 155.28386 * 17 7 6 19 19 C 1.36453 * 120.37743 * 5.49260 * 18 17 7 20 20 C 1.40453 * 119.64379 * 179.78302 * 19 18 17 21 21 C 1.34912 * 120.35321 * 0.49953 * 20 19 18 22 22 N 1.36672 * 120.70349 * 359.75362 * 21 20 19 23 23 C 1.36788 * 132.54200 * 180.02562 * 22 21 20 24 24 C 1.35151 * 107.17397 * 179.97438 * 23 22 21 25 25 C 1.50698 * 125.69705 * 179.97438 * 24 23 22 26 26 N 1.33462 * 108.59864 * 0.02562 * 24 23 22 27 27 C 1.32544 * 109.15364 * 359.97438 * 26 24 23 28 28 H 1.08998 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46449 * 300.00187 * 1 2 3 30 30 H 1.08993 * 109.47219 * 59.99626 * 1 2 3 31 31 H 1.08995 * 109.46768 * 239.99979 * 2 1 3 32 32 H 1.09002 * 109.47070 * 120.00116 * 2 1 3 33 33 H 1.08999 * 109.46738 * 299.99992 * 6 4 3 34 34 H 1.09002 * 109.47196 * 59.99604 * 6 4 3 35 35 H 0.97003 * 120.00003 * 180.02562 * 12 11 9 36 36 H 1.07991 * 120.17533 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.82409 * 180.23089 * 20 19 18 38 38 H 1.07999 * 119.65075 * 179.77384 * 21 20 19 39 39 H 1.07995 * 126.40834 * 0.02562 * 23 22 21 40 40 H 1.09001 * 109.47424 * 270.01863 * 25 24 23 41 41 H 1.09001 * 109.47523 * 30.01729 * 25 24 23 42 42 H 1.08997 * 109.47361 * 150.01640 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4487 2.8572 -0.0001 8 1 5.7802 2.2415 -0.8363 9 6 6.0244 4.2431 -0.1374 10 1 6.5865 4.5093 -1.0203 11 6 5.8336 5.1712 0.8642 12 7 5.0698 4.8794 1.8943 13 14 6.6598 6.8432 0.7581 14 1 5.7194 7.8229 0.1572 15 1 7.0410 7.2943 2.1206 16 1 7.8760 6.7414 -0.0879 17 8 5.8953 2.2752 1.2262 18 6 7.1076 1.6609 1.2123 19 6 7.8943 1.7120 0.0985 20 6 9.1463 1.0756 0.1026 21 6 9.5681 0.4078 1.1964 22 7 8.7896 0.3430 2.3178 23 6 8.9703 -0.2522 3.5360 24 6 7.8684 0.0072 4.2744 25 6 7.6288 -0.4545 5.6887 26 7 7.0275 0.7396 3.5412 27 6 7.5653 0.9564 2.3493 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5845 3.4699 -0.8895 34 1 3.5853 3.4690 0.8904 35 1 4.9353 5.5324 2.5988 36 1 7.5573 2.2416 -0.7802 37 1 9.7730 1.1174 -0.7760 38 1 10.5313 -0.0805 1.1858 39 1 9.8325 -0.8221 3.8494 40 1 7.1316 -1.4244 5.6751 41 1 8.5828 -0.5427 6.2087 42 1 6.9989 0.2694 6.2055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228839699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:03 Heat of formation + Delta-G solvation = -55.844985 kcal Electronic energy + Delta-G solvation = -27131.342336 eV Core-core repulsion = 23270.741990 eV Total energy + Delta-G solvation = -3860.600346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.64110 -41.47877 -39.95543 -37.85836 -37.42578 -35.25888 -33.59398 -32.93472 -32.51597 -31.81019 -29.43654 -28.46365 -27.86352 -25.01306 -24.05658 -23.58421 -22.95313 -21.54554 -21.48772 -19.51341 -18.86863 -18.35260 -17.79004 -17.62712 -17.36325 -17.00317 -16.89904 -16.47814 -16.11049 -15.36215 -15.22514 -15.09367 -14.76626 -14.23599 -14.08816 -13.84121 -13.79529 -13.67833 -13.30731 -13.26624 -13.06199 -12.86881 -12.83769 -12.73467 -12.59201 -12.48893 -12.34923 -12.27473 -11.64404 -11.52950 -11.42297 -11.26051 -10.94705 -10.70981 -10.55364 -9.38171 -8.32274 -8.14589 -6.44341 0.18715 0.39488 1.28918 1.39618 1.43082 1.52319 1.67485 1.82017 1.98782 2.37126 2.73123 2.75301 3.18851 3.35518 3.77751 3.92202 3.97511 4.01775 4.10803 4.16333 4.31215 4.32466 4.39507 4.46685 4.51077 4.56434 4.79339 4.85657 4.88251 4.90719 4.94206 5.03975 5.10006 5.11716 5.21805 5.29195 5.45934 5.53191 5.63648 5.70286 5.79215 5.92400 6.30187 6.51728 6.83646 6.89521 7.13626 7.37161 8.82883 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.006003 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.757634 B = 4663.150776 C = 6675.470600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.462 3.538 5 O -0.541 6.541 6 C -0.095 4.095 7 C 0.223 3.777 8 H 0.033 0.967 9 C -0.572 4.572 10 H 0.074 0.926 11 C 0.043 3.957 12 N -0.880 5.880 13 Si 0.953 3.047 14 H -0.264 1.264 15 H -0.293 1.293 16 H -0.265 1.265 17 O -0.292 6.292 18 C 0.180 3.820 19 C -0.247 4.247 20 C -0.085 4.085 21 C -0.026 4.026 22 N -0.340 5.340 23 C -0.090 4.090 24 C 0.012 3.988 25 C -0.061 4.061 26 N -0.526 5.526 27 C 0.172 3.828 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.265 0.735 36 H 0.141 0.859 37 H 0.188 0.812 38 H 0.208 0.792 39 H 0.231 0.769 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 -10.013 -1.718 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.133 4.133 7 C 0.169 3.831 8 H 0.051 0.949 9 C -0.608 4.608 10 H 0.093 0.907 11 C -0.162 4.162 12 N -0.515 5.515 13 Si 0.778 3.222 14 H -0.189 1.189 15 H -0.219 1.219 16 H -0.189 1.189 17 O -0.203 6.203 18 C 0.129 3.871 19 C -0.271 4.271 20 C -0.105 4.105 21 C -0.145 4.145 22 N -0.012 5.012 23 C -0.222 4.222 24 C -0.122 4.122 25 C -0.118 4.118 26 N -0.248 5.248 27 C -0.071 4.071 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.132 0.868 35 H 0.074 0.926 36 H 0.158 0.842 37 H 0.205 0.795 38 H 0.225 0.775 39 H 0.247 0.753 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.748 -9.967 -1.149 10.402 hybrid contribution 0.809 0.751 -0.268 1.136 sum 3.557 -9.216 -1.417 9.980 Atomic orbital electron populations 1.21805 0.89699 1.04481 1.03761 1.23272 0.97606 0.79745 1.01871 1.86542 1.24260 1.33479 1.84039 1.24623 0.80374 0.93596 0.70641 1.90582 1.61102 1.44286 1.47087 1.21700 0.95834 0.88845 1.06881 1.19892 0.89619 0.92400 0.81221 0.94938 1.21584 1.37105 0.96062 1.06079 0.90746 1.25742 0.94241 1.01809 0.94408 1.70045 1.35803 1.35910 1.09734 0.85623 0.79495 0.79886 0.77178 1.18890 1.21930 1.18875 1.86234 1.29467 1.65398 1.39160 1.18028 0.88200 0.90242 0.90622 1.21190 0.97602 1.09398 0.98949 1.20986 0.95168 0.95375 0.98982 1.22068 0.99348 1.08000 0.85133 1.42783 1.13326 1.32970 1.12126 1.23062 1.04993 1.10061 0.84068 1.21756 0.91629 0.99499 0.99330 1.20175 1.03909 1.00979 0.86784 1.70587 1.31907 1.20050 1.02213 1.20068 0.87306 1.04485 0.95272 0.87765 0.91651 0.90741 0.91273 0.92834 0.85622 0.86834 0.92601 0.84158 0.79493 0.77503 0.75295 0.90007 0.87564 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 10.29 71.98 0.74 -2.22 16 2 C 0.05 1.49 6.19 71.98 0.45 1.94 16 3 O -0.37 -14.21 10.22 -51.40 -0.53 -14.74 16 4 C 0.46 21.04 7.84 71.23 0.56 21.59 16 5 O -0.54 -27.24 15.18 26.90 0.41 -26.83 16 6 C -0.10 -4.48 5.28 29.85 0.16 -4.32 16 7 C 0.22 11.40 1.34 29.85 0.04 11.44 16 8 H 0.03 1.63 6.14 -2.39 -0.01 1.61 16 9 C -0.57 -29.72 7.96 25.60 0.20 -29.51 16 10 H 0.07 3.69 7.82 -2.91 -0.02 3.66 16 11 C 0.04 2.30 5.26 84.66 0.44 2.75 16 12 N -0.88 -50.01 11.04 21.45 0.24 -49.77 16 13 Si 0.95 42.09 29.54 68.60 2.03 44.12 16 14 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 15 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 17 O -0.29 -16.53 8.30 -79.27 -0.66 -17.19 16 18 C 0.18 9.22 6.63 22.62 0.15 9.37 16 19 C -0.25 -10.50 8.75 22.39 0.20 -10.30 16 20 C -0.09 -2.64 9.98 22.04 0.22 -2.42 16 21 C -0.03 -0.76 10.95 83.17 0.91 0.15 16 22 N -0.34 -12.66 2.95 -351.74 -1.04 -13.70 16 23 C -0.09 -2.79 11.66 83.21 0.97 -1.82 16 24 C 0.01 0.46 7.06 41.60 0.29 0.75 16 25 C -0.06 -1.60 10.42 71.24 0.74 -0.86 16 26 N -0.53 -26.25 11.31 -182.14 -2.06 -28.31 16 27 C 0.17 8.43 7.77 134.26 1.04 9.47 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 32 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.13 5.19 8.14 -2.39 -0.02 5.17 16 34 H 0.11 5.95 6.47 -2.39 -0.02 5.94 16 35 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.14 6.01 5.68 -2.92 -0.02 5.99 16 37 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.21 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.23 4.30 8.06 -2.91 -0.02 4.27 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 41 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -79.15 359.08 6.54 -72.61 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 1.04 Total: 27.81 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 7.12 Total: 6.00 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -2.86 Total: -91.78 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -0.77 Total: -58.76 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -79.15 6.54 -72.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228839699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.763 kcal (2) G-P(sol) polarization free energy of solvation -79.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds