Wall clock time and date at job start Tue Mar 31 2020 13:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 120.00514 * 2 1 4 4 C 1.46911 * 119.99641 * 180.02562 * 2 1 3 5 5 C 1.40251 * 120.02565 * 359.97265 * 4 2 1 6 6 C 1.37527 * 120.21302 * 179.76359 * 5 4 2 7 7 C 1.39018 * 120.26946 * 0.51974 * 6 5 4 8 8 O 1.35440 * 119.97599 * 179.75903 * 7 6 5 9 9 C 1.42899 * 117.00131 * 5.83586 * 8 7 6 10 10 C 1.53514 * 114.17065 * 156.78663 * 9 8 7 11 11 N 1.47486 * 87.93143 * 87.62351 * 10 9 8 12 12 C 1.46896 * 111.00154 * 138.69810 * 11 10 9 13 13 C 1.50698 * 109.47289 * 169.99972 * 12 11 10 14 14 H 1.08003 * 119.99534 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00351 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00309 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00018 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46989 * 270.00557 * 17 15 13 19 19 H 1.48501 * 109.47084 * 30.00123 * 17 15 13 20 20 H 1.48494 * 109.47637 * 150.00395 * 17 15 13 21 21 C 1.47487 * 87.83331 * 27.00928 * 11 10 9 22 22 C 1.40413 * 120.04659 * 359.48347 * 7 6 5 23 23 C 1.47592 * 120.11168 * 180.27593 * 22 7 6 24 24 N 1.34771 * 119.99967 * 179.97438 * 23 22 7 25 25 O 1.21579 * 119.99627 * 359.97438 * 23 22 7 26 26 C 1.39193 * 119.78479 * 0.25544 * 22 7 6 27 27 H 1.09005 * 109.47051 * 240.00383 * 1 2 3 28 28 H 1.09000 * 109.46866 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47251 * 119.99778 * 1 2 3 30 30 H 1.07994 * 119.89301 * 0.02730 * 5 4 2 31 31 H 1.08004 * 119.86183 * 180.25652 * 6 5 4 32 32 H 1.09003 * 113.25469 * 23.84046 * 9 8 7 33 33 H 1.08993 * 113.47813 * 332.86047 * 10 9 8 34 34 H 1.09002 * 113.53367 * 202.39545 * 10 9 8 35 35 H 1.09004 * 109.46819 * 50.00695 * 12 11 10 36 36 H 1.08994 * 109.47513 * 290.00323 * 12 11 10 37 37 H 0.96997 * 120.00054 * 179.97438 * 16 15 13 38 38 H 1.09004 * 113.47570 * 87.76017 * 21 11 10 39 39 H 1.09001 * 113.47639 * 218.21970 * 21 11 10 40 40 H 0.96992 * 120.00402 * 0.02562 * 24 23 22 41 41 H 0.97007 * 119.99808 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.13237 * 179.97438 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2415 -1.2723 -0.0006 5 6 1.5407 -2.4872 -0.0005 6 6 2.2243 -3.6805 -0.0060 7 6 3.6145 -3.6917 -0.0006 8 8 4.2817 -4.8704 -0.0011 9 6 3.4995 -6.0586 -0.1366 10 6 4.2771 -7.2640 -0.6835 11 7 4.6586 -7.5803 0.7057 12 6 4.5876 -9.0262 0.9549 13 6 5.2123 -9.3370 2.2906 14 1 5.6209 -8.5400 2.8942 15 6 5.2623 -10.6387 2.7422 16 7 5.8071 -10.9099 3.9081 17 14 4.5563 -12.0173 1.6980 18 1 3.1251 -12.2152 2.0414 19 1 4.6759 -11.6611 0.2613 20 1 5.3064 -13.2716 1.9610 21 6 3.4199 -6.9077 1.1398 22 6 4.3273 -2.4820 -0.0006 23 6 5.8032 -2.4922 -0.0011 24 7 6.4851 -1.3298 -0.0016 25 8 6.4037 -3.5494 -0.0011 26 6 3.6375 -1.2730 -0.0006 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 0.4607 -2.4856 -0.0005 31 1 1.6789 -4.6127 -0.0101 32 1 2.5394 -5.8886 -0.6239 33 1 5.1222 -6.9862 -1.3132 34 1 3.6407 -8.0209 -1.1420 35 1 5.1259 -9.5571 0.1698 36 1 3.5448 -9.3434 0.9589 37 1 5.8419 -11.8257 4.2259 38 1 2.5538 -7.5689 1.1682 39 1 3.5385 -6.3279 2.0551 40 1 6.0060 -0.4864 -0.0013 41 1 7.4552 -1.3365 -0.0016 42 1 4.1802 -0.3392 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229335542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:49 Heat of formation + Delta-G solvation = -30.538322 kcal Electronic energy + Delta-G solvation = -25972.375756 eV Core-core repulsion = 22112.872790 eV Total energy + Delta-G solvation = -3859.502967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08979 -39.96243 -39.33049 -38.16462 -36.73536 -33.84497 -32.81663 -31.98994 -31.08476 -30.04220 -29.18640 -25.90024 -25.54933 -24.41562 -23.63069 -22.04253 -21.03411 -19.93480 -19.70046 -18.53311 -17.31855 -17.07652 -16.78045 -16.32234 -15.91819 -15.76404 -15.38648 -15.21931 -15.10562 -14.67239 -14.45154 -14.38703 -13.85160 -13.66359 -13.52395 -13.06089 -12.93498 -12.70178 -12.65169 -12.45765 -12.35245 -11.95962 -11.86881 -11.20789 -11.13636 -10.59662 -10.29941 -10.24031 -10.06028 -9.86487 -9.80636 -9.71357 -9.51775 -9.35869 -8.58568 -8.49897 -7.99985 -6.04623 -4.02221 0.34220 0.62159 1.96851 2.84288 2.89406 3.24732 3.33300 3.34109 3.35641 3.58485 3.71303 4.28585 4.32690 4.40040 4.48461 4.54562 4.65406 4.70460 4.85019 4.92715 4.97220 4.98669 5.09701 5.24592 5.37269 5.41858 5.53170 5.64767 5.76168 5.78936 5.85226 5.87399 5.99702 6.11552 6.27234 6.41390 6.63183 6.73022 7.17548 7.18509 7.28634 7.32651 7.66048 7.80338 8.27223 8.63225 9.07769 9.55845 11.08903 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002831 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.858266 B = 9887.141185 C =10700.530339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.402 3.598 3 O -0.467 6.467 4 C -0.234 4.234 5 C -0.003 4.003 6 C -0.235 4.235 7 C 0.230 3.770 8 O -0.230 6.230 9 C 0.032 3.968 10 C -0.001 4.001 11 N -0.440 5.440 12 C 0.125 3.875 13 C -0.506 4.506 14 H 0.081 0.919 15 C 0.067 3.933 16 N -0.899 5.899 17 Si 0.875 3.125 18 H -0.277 1.277 19 H -0.268 1.268 20 H -0.285 1.285 21 C -0.004 4.004 22 C -0.193 4.193 23 C 0.559 3.441 24 N -0.858 5.858 25 O -0.503 6.503 26 C 0.014 3.986 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.030 0.970 36 H -0.004 1.004 37 H 0.264 0.736 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.397 0.603 41 H 0.405 0.595 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.782 21.863 -11.580 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.281 3.719 3 O -0.344 6.344 4 C -0.235 4.235 5 C -0.021 4.021 6 C -0.254 4.254 7 C 0.179 3.821 8 O -0.139 6.139 9 C -0.024 4.024 10 C -0.130 4.130 11 N -0.162 5.162 12 C -0.002 4.002 13 C -0.544 4.544 14 H 0.099 0.901 15 C -0.135 4.135 16 N -0.538 5.538 17 Si 0.703 3.297 18 H -0.203 1.203 19 H -0.193 1.193 20 H -0.210 1.210 21 C -0.134 4.134 22 C -0.197 4.197 23 C 0.344 3.656 24 N -0.424 5.424 25 O -0.377 6.377 26 C -0.005 4.005 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.157 0.843 31 H 0.165 0.835 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.014 0.986 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.226 0.774 41 H 0.236 0.764 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.292 21.537 -11.154 26.753 hybrid contribution -1.236 -1.022 -0.644 1.728 sum -12.528 20.514 -11.797 26.776 Atomic orbital electron populations 1.22254 0.93758 1.05207 1.04596 1.22294 0.91614 0.87317 0.70633 1.90540 1.72170 1.34286 1.37440 1.20219 0.93993 0.95026 1.14290 1.21352 1.00198 0.90582 0.89986 1.21330 0.92778 1.00162 1.11104 1.19501 0.90407 0.86301 0.85941 1.86465 1.33804 1.10916 1.82671 1.23933 0.94619 0.83739 1.00139 1.24039 0.99537 0.93315 0.96100 1.69117 1.30162 1.13505 1.03435 1.20779 0.95377 0.84994 0.99046 1.20960 1.37906 0.94327 1.01195 0.90097 1.24934 0.95166 0.98428 0.94928 1.69898 1.45006 1.19821 1.19114 0.86862 0.79307 0.82243 0.81328 1.20330 1.19259 1.21032 1.24274 0.94769 0.96622 0.97718 1.19256 0.93680 0.91256 1.15476 1.17922 0.86807 0.84170 0.76669 1.43745 1.11039 1.08235 1.79386 1.90992 1.69634 1.29962 1.47064 1.21359 0.93374 0.96552 0.89219 0.88722 0.89705 0.88811 0.84299 0.83549 0.89072 0.89074 0.90344 0.95245 0.98617 0.92645 0.90307 0.89418 0.77429 0.76372 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.89 8.92 36.01 0.32 -0.57 16 2 C 0.40 3.28 7.22 -30.80 -0.22 3.06 16 3 O -0.47 -5.29 17.06 5.55 0.09 -5.20 16 4 C -0.23 -2.02 5.86 -105.12 -0.62 -2.64 16 5 C 0.00 -0.02 9.45 -39.08 -0.37 -0.39 16 6 C -0.24 -2.26 8.99 -39.55 -0.36 -2.61 16 7 C 0.23 3.05 6.70 -38.47 -0.26 2.79 16 8 O -0.23 -3.83 8.23 -39.95 -0.33 -4.16 16 9 C 0.03 0.47 4.05 -26.20 -0.11 0.37 16 10 C 0.00 -0.01 7.52 -7.54 -0.06 -0.07 16 11 N -0.44 -9.61 6.32 -246.09 -1.55 -11.17 16 12 C 0.13 3.06 3.64 -4.98 -0.02 3.04 16 13 C -0.51 -14.91 9.94 -34.44 -0.34 -15.25 16 14 H 0.08 2.66 8.06 -52.48 -0.42 2.24 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 17 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 21 C 0.00 -0.08 7.55 -7.54 -0.06 -0.13 16 22 C -0.19 -2.41 5.88 -104.91 -0.62 -3.02 16 23 C 0.56 7.88 8.04 -12.45 -0.10 7.78 16 24 N -0.86 -7.93 8.82 30.47 0.27 -7.66 16 25 O -0.50 -9.71 15.98 -16.64 -0.27 -9.97 16 26 C 0.01 0.14 9.08 -38.72 -0.35 -0.22 16 27 H 0.09 0.28 8.08 -51.93 -0.42 -0.14 16 28 H 0.08 0.39 8.12 -51.93 -0.42 -0.04 16 29 H 0.09 0.25 8.08 -51.93 -0.42 -0.17 16 30 H 0.14 0.53 7.01 -52.49 -0.37 0.16 16 31 H 0.15 1.15 5.87 -52.48 -0.31 0.85 16 32 H 0.09 0.95 5.89 -51.93 -0.31 0.64 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.08 1.14 7.91 -51.93 -0.41 0.73 16 35 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 36 H 0.00 -0.09 6.73 -51.93 -0.35 -0.44 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16 39 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.40 2.48 6.85 -40.82 -0.28 2.20 16 41 H 0.41 3.28 8.93 -40.82 -0.36 2.92 16 42 H 0.14 1.12 5.97 -52.48 -0.31 0.80 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -38.61 353.54 -8.75 -47.36 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.15 Total: 2.00 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -3.25 Total: -5.99 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.51 Total: -46.19 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.50 Total: -19.33 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.61 -8.75 -47.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229335542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.821 kcal (2) G-P(sol) polarization free energy of solvation -38.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds