Wall clock time and date at job start Tue Mar 31 2020 13:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 120.00514 * 2 1 4 4 C 1.46911 * 119.99641 * 180.02562 * 2 1 3 5 5 C 1.40251 * 120.02565 * 359.97265 * 4 2 1 6 6 C 1.37527 * 120.21302 * 179.76359 * 5 4 2 7 7 C 1.39018 * 120.26946 * 0.51974 * 6 5 4 8 8 O 1.35440 * 119.97599 * 179.75903 * 7 6 5 9 9 C 1.42899 * 117.00131 * 5.83586 * 8 7 6 10 10 C 1.53514 * 114.17065 * 156.78663 * 9 8 7 11 11 N 1.47486 * 87.93143 * 87.62351 * 10 9 8 12 12 C 1.46896 * 111.00154 * 138.69810 * 11 10 9 13 13 C 1.50698 * 109.47289 * 169.99972 * 12 11 10 14 14 H 1.08003 * 119.99534 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00351 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00309 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00018 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46989 * 270.00557 * 17 15 13 19 19 H 1.48501 * 109.47084 * 30.00123 * 17 15 13 20 20 H 1.48494 * 109.47637 * 150.00395 * 17 15 13 21 21 C 1.47487 * 87.83331 * 27.00928 * 11 10 9 22 22 C 1.40413 * 120.04659 * 359.48347 * 7 6 5 23 23 C 1.47592 * 120.11168 * 180.27593 * 22 7 6 24 24 N 1.34771 * 119.99967 * 179.97438 * 23 22 7 25 25 O 1.21579 * 119.99627 * 359.97438 * 23 22 7 26 26 C 1.39193 * 119.78479 * 0.25544 * 22 7 6 27 27 H 1.09005 * 109.47051 * 240.00383 * 1 2 3 28 28 H 1.09000 * 109.46866 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47251 * 119.99778 * 1 2 3 30 30 H 1.07994 * 119.89301 * 0.02730 * 5 4 2 31 31 H 1.08004 * 119.86183 * 180.25652 * 6 5 4 32 32 H 1.09003 * 113.25469 * 23.84046 * 9 8 7 33 33 H 1.08993 * 113.47813 * 332.86047 * 10 9 8 34 34 H 1.09002 * 113.53367 * 202.39545 * 10 9 8 35 35 H 1.09004 * 109.46819 * 50.00695 * 12 11 10 36 36 H 1.08994 * 109.47513 * 290.00323 * 12 11 10 37 37 H 0.96997 * 120.00054 * 179.97438 * 16 15 13 38 38 H 1.09004 * 113.47570 * 87.76017 * 21 11 10 39 39 H 1.09001 * 113.47639 * 218.21970 * 21 11 10 40 40 H 0.96992 * 120.00402 * 0.02562 * 24 23 22 41 41 H 0.97007 * 119.99808 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.13237 * 179.97438 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2415 -1.2723 -0.0006 5 6 1.5407 -2.4872 -0.0005 6 6 2.2243 -3.6805 -0.0060 7 6 3.6145 -3.6917 -0.0006 8 8 4.2817 -4.8704 -0.0011 9 6 3.4995 -6.0586 -0.1366 10 6 4.2771 -7.2640 -0.6835 11 7 4.6586 -7.5803 0.7057 12 6 4.5876 -9.0262 0.9549 13 6 5.2123 -9.3370 2.2906 14 1 5.6209 -8.5400 2.8942 15 6 5.2623 -10.6387 2.7422 16 7 5.8071 -10.9099 3.9081 17 14 4.5563 -12.0173 1.6980 18 1 3.1251 -12.2152 2.0414 19 1 4.6759 -11.6611 0.2613 20 1 5.3064 -13.2716 1.9610 21 6 3.4199 -6.9077 1.1398 22 6 4.3273 -2.4820 -0.0006 23 6 5.8032 -2.4922 -0.0011 24 7 6.4851 -1.3298 -0.0016 25 8 6.4037 -3.5494 -0.0011 26 6 3.6375 -1.2730 -0.0006 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 0.4607 -2.4856 -0.0005 31 1 1.6789 -4.6127 -0.0101 32 1 2.5394 -5.8886 -0.6239 33 1 5.1222 -6.9862 -1.3132 34 1 3.6407 -8.0209 -1.1420 35 1 5.1259 -9.5571 0.1698 36 1 3.5448 -9.3434 0.9589 37 1 5.8419 -11.8257 4.2259 38 1 2.5538 -7.5689 1.1682 39 1 3.5385 -6.3279 2.0551 40 1 6.0060 -0.4864 -0.0013 41 1 7.4552 -1.3365 -0.0016 42 1 4.1802 -0.3392 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229335542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:49 Heat of formation + Delta-G solvation = -62.898060 kcal Electronic energy + Delta-G solvation = -25973.778980 eV Core-core repulsion = 22112.872790 eV Total energy + Delta-G solvation = -3860.906190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07075 -41.01533 -40.25349 -39.26079 -37.71949 -34.97583 -34.84888 -32.78253 -31.83614 -31.65015 -29.92257 -27.55791 -26.91097 -25.24921 -24.56798 -23.38121 -22.38135 -21.00359 -20.54272 -19.50280 -18.98725 -18.23281 -17.95644 -17.21027 -17.06016 -16.78308 -16.50752 -16.11953 -16.06070 -15.92817 -15.71640 -15.32832 -15.26693 -14.87526 -14.63202 -14.44059 -14.24582 -13.72441 -13.62305 -13.27952 -13.25173 -13.00501 -12.92734 -12.66717 -12.49135 -12.14892 -11.79765 -11.64565 -11.55052 -11.41662 -11.15282 -10.81387 -10.73067 -10.71900 -10.24851 -9.56219 -9.38041 -8.30978 -6.36539 -0.40778 -0.14504 1.25659 1.32230 1.37181 1.47839 1.92330 1.95482 2.33041 2.49200 2.74273 3.00931 3.11724 3.23397 3.25134 3.57444 3.66154 3.84416 3.92061 4.11634 4.17874 4.28725 4.33512 4.38221 4.53275 4.54270 4.59239 4.71113 4.72370 4.78088 4.80607 4.88010 4.95015 5.07209 5.13361 5.35074 5.46732 5.52330 5.71548 5.86408 5.96139 6.28952 6.43557 6.57155 6.58370 6.69710 7.26938 7.31737 8.87030 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002831 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.858266 B = 9887.141185 C =10700.530339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.404 3.596 3 O -0.506 6.506 4 C -0.234 4.234 5 C 0.020 3.980 6 C -0.232 4.232 7 C 0.197 3.803 8 O -0.272 6.272 9 C 0.056 3.944 10 C 0.000 4.000 11 N -0.495 5.495 12 C 0.138 3.862 13 C -0.523 4.523 14 H 0.019 0.981 15 C 0.001 3.999 16 N -0.953 5.953 17 Si 0.960 3.040 18 H -0.257 1.257 19 H -0.246 1.246 20 H -0.283 1.283 21 C -0.008 4.008 22 C -0.214 4.214 23 C 0.552 3.448 24 N -0.836 5.836 25 O -0.570 6.570 26 C 0.013 3.987 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.189 0.811 31 H 0.170 0.830 32 H 0.146 0.854 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.027 0.973 36 H 0.018 0.982 37 H 0.268 0.732 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.413 0.587 41 H 0.411 0.589 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 22.334 -13.950 31.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.286 3.714 3 O -0.386 6.386 4 C -0.236 4.236 5 C 0.002 3.998 6 C -0.250 4.250 7 C 0.148 3.852 8 O -0.182 6.182 9 C 0.000 4.000 10 C -0.129 4.129 11 N -0.218 5.218 12 C 0.010 3.990 13 C -0.562 4.562 14 H 0.038 0.962 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.782 3.218 18 H -0.181 1.181 19 H -0.169 1.169 20 H -0.209 1.209 21 C -0.137 4.137 22 C -0.218 4.218 23 C 0.339 3.661 24 N -0.402 5.402 25 O -0.449 6.449 26 C -0.006 4.006 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.206 0.794 31 H 0.187 0.813 32 H 0.163 0.837 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.245 0.755 41 H 0.243 0.757 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.865 22.105 -13.536 30.390 hybrid contribution 0.217 -0.912 0.180 0.954 sum -15.648 21.193 -13.357 29.537 Atomic orbital electron populations 1.22316 0.90170 1.06024 1.06860 1.22843 0.93409 0.86171 0.68984 1.90543 1.73287 1.35407 1.39340 1.20549 0.93517 0.96350 1.13159 1.21835 1.02371 0.88813 0.86809 1.21598 0.91008 1.02097 1.10288 1.19911 0.92167 0.85282 0.87890 1.86428 1.35700 1.12288 1.83797 1.23808 0.95965 0.82729 0.97493 1.24132 1.00097 0.95316 0.93373 1.68984 1.33590 1.11754 1.07484 1.20530 0.95614 0.87280 0.95564 1.21234 1.38401 0.93263 1.03261 0.96236 1.26058 0.95355 1.01762 0.96399 1.70090 1.46808 1.20859 1.21608 0.85532 0.79071 0.77250 0.79951 1.18133 1.16900 1.20862 1.24349 0.93769 0.97185 0.98423 1.19281 0.92726 0.92410 1.17411 1.18386 0.87931 0.84138 0.75679 1.43575 1.11450 1.07871 1.77291 1.90951 1.70993 1.32319 1.50649 1.21506 0.94435 0.95853 0.88802 0.86413 0.89883 0.86106 0.79430 0.81263 0.83691 0.90422 0.87064 0.95473 0.96417 0.92329 0.87958 0.91948 0.75504 0.75711 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.79 8.92 71.24 0.64 -0.16 16 2 C 0.40 5.30 7.22 27.96 0.20 5.50 16 3 O -0.51 -10.59 17.06 -3.04 -0.05 -10.64 16 4 C -0.23 -3.32 5.86 -20.19 -0.12 -3.44 16 5 C 0.02 0.20 9.45 22.59 0.21 0.41 16 6 C -0.23 -3.64 8.99 22.29 0.20 -3.44 16 7 C 0.20 5.11 6.70 22.99 0.15 5.27 16 8 O -0.27 -9.23 8.23 -66.38 -0.55 -9.78 16 9 C 0.06 1.56 4.05 30.94 0.13 1.68 16 10 C 0.00 -0.01 7.52 83.58 0.63 0.61 16 11 N -0.50 -22.14 6.32 -932.87 -5.89 -28.03 16 12 C 0.14 6.75 3.64 85.56 0.31 7.06 16 13 C -0.52 -32.30 9.94 25.60 0.25 -32.04 16 14 H 0.02 1.38 8.06 -2.91 -0.02 1.36 16 15 C 0.00 0.05 5.47 84.65 0.46 0.52 16 16 N -0.95 -62.05 13.96 21.45 0.30 -61.75 16 17 Si 0.96 44.15 27.47 68.60 1.88 46.03 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 19 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 C -0.01 -0.28 7.55 83.58 0.63 0.35 16 22 C -0.21 -5.41 5.88 -20.05 -0.12 -5.53 16 23 C 0.55 16.51 8.04 86.71 0.70 17.21 16 24 N -0.84 -16.12 8.82 -175.78 -1.55 -17.67 16 25 O -0.57 -23.89 15.98 17.01 0.27 -23.62 16 26 C 0.01 0.24 9.08 22.83 0.21 0.44 16 27 H 0.12 0.00 8.08 -2.38 -0.02 -0.02 16 28 H 0.08 0.44 8.12 -2.39 -0.02 0.42 16 29 H 0.12 -0.10 8.08 -2.39 -0.02 -0.12 16 30 H 0.19 0.05 7.01 -2.91 -0.02 0.03 16 31 H 0.17 1.80 5.87 -2.91 -0.02 1.78 16 32 H 0.15 2.37 5.89 -2.39 -0.01 2.36 16 33 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.11 2.86 7.91 -2.39 -0.02 2.84 16 35 H 0.03 1.32 7.14 -2.39 -0.02 1.31 16 36 H 0.02 0.80 6.73 -2.39 -0.02 0.78 16 37 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 38 H 0.10 3.02 7.42 -2.38 -0.02 3.01 16 39 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.41 5.13 6.85 -92.71 -0.64 4.50 16 41 H 0.41 7.06 8.93 -92.70 -0.83 6.23 16 42 H 0.15 2.29 5.97 -2.91 -0.02 2.27 16 Total: -1.00 -94.40 353.54 -1.53 -95.93 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.43 Total: 15.07 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.49 Total: -5.56 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -7.14 Total: -107.44 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.33 Total: -44.03 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -94.40 -1.53 -95.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229335542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.033 kcal (2) G-P(sol) polarization free energy of solvation -94.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds