Wall clock time and date at job start Tue Mar 31 2020 13:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45205 * 109.47089 * 2 1 4 4 C 1.34225 * 117.00018 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00123 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00043 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47364 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46799 * 54.53550 * 7 6 4 9 9 C 1.50691 * 109.47511 * 174.53741 * 7 6 4 10 10 H 1.07996 * 119.99925 * 95.21316 * 9 7 6 11 11 C 1.37882 * 119.99884 * 275.22053 * 9 7 6 12 12 N 1.31516 * 119.99670 * 174.92776 * 11 9 7 13 13 Si 1.86801 * 119.99999 * 354.92518 * 11 9 7 14 14 H 1.48503 * 109.46856 * 94.67651 * 13 11 9 15 15 H 1.48497 * 109.46790 * 214.67250 * 13 11 9 16 16 H 1.48499 * 109.47129 * 334.67211 * 13 11 9 17 17 O 1.42895 * 109.47139 * 294.54301 * 7 6 4 18 18 C 1.35976 * 117.00197 * 155.47187 * 17 7 6 19 19 C 1.36059 * 119.19623 * 5.70555 * 18 17 7 20 20 C 1.41190 * 119.49514 * 179.74363 * 19 18 17 21 21 C 1.38220 * 134.75028 * 180.21862 * 20 19 18 22 22 N 1.34106 * 107.90279 * 180.27480 * 21 20 19 23 23 H 0.96999 * 125.03732 * 180.02562 * 22 21 20 24 24 N 1.39960 * 109.92926 * 0.02562 * 22 21 20 25 25 C 1.32122 * 108.95301 * 359.97438 * 24 22 21 26 26 C 1.41170 * 134.59035 * 180.02562 * 25 24 22 27 27 C 1.35562 * 119.67434 * 179.97438 * 26 25 24 28 28 C 1.50708 * 119.10872 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.47010 * 59.99977 * 1 2 3 30 30 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47135 * 300.00189 * 1 2 3 32 32 H 1.08998 * 109.47099 * 240.00360 * 2 1 3 33 33 H 1.09001 * 109.47010 * 120.00023 * 2 1 3 34 34 H 1.09004 * 109.46881 * 60.00555 * 6 4 3 35 35 H 1.08997 * 109.47420 * 300.00340 * 6 4 3 36 36 H 0.96999 * 119.99857 * 179.97438 * 12 11 9 37 37 H 1.08001 * 120.25704 * 359.97438 * 19 18 17 38 38 H 1.07994 * 126.04832 * 0.27624 * 21 20 19 39 39 H 1.08001 * 120.15735 * 359.93856 * 26 25 24 40 40 H 1.09006 * 109.46806 * 270.02120 * 28 27 26 41 41 H 1.08998 * 109.47170 * 30.02071 * 28 27 26 42 42 H 1.08996 * 109.46702 * 150.02476 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4487 2.8574 0.0014 8 1 5.7810 2.2423 -0.8348 9 6 6.0244 4.2434 -0.1344 10 1 6.3131 4.7969 0.7469 11 6 6.1826 4.8048 -1.3837 12 7 6.5908 6.0498 -1.4982 13 14 5.8171 3.7972 -2.9136 14 1 4.4233 4.0564 -3.3557 15 1 6.7591 4.1808 -3.9956 16 1 5.9784 2.3534 -2.6056 17 8 5.8940 2.2746 1.2278 18 6 7.1086 1.6636 1.2157 19 6 7.8777 1.7377 0.0957 20 6 9.1424 1.1101 0.0782 21 6 10.1557 0.9890 -0.8540 22 7 11.1374 0.2599 -0.3034 23 1 11.9693 0.0238 -0.7429 24 7 10.7838 -0.1098 0.9994 25 6 9.5882 0.3803 1.2749 26 6 8.7354 0.3394 2.3992 27 6 7.5349 0.9674 2.3542 28 6 6.6343 0.9151 3.5615 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5844 3.4700 0.8896 35 1 3.5852 3.4691 -0.8904 36 1 6.7024 6.4446 -2.3772 37 1 7.5252 2.2756 -0.7719 38 1 10.1567 1.4074 -1.8496 39 1 9.0378 -0.1902 3.2906 40 1 5.9823 0.0444 3.4909 41 1 7.2408 0.8426 4.4642 42 1 6.0286 1.8203 3.6023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230223256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:23 Heat of formation + Delta-G solvation = -34.872751 kcal Electronic energy + Delta-G solvation = -27078.708242 eV Core-core repulsion = 23219.017321 eV Total energy + Delta-G solvation = -3859.690922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.80947 -40.04086 -38.68243 -36.43244 -35.67743 -33.16278 -31.84360 -31.79341 -31.30578 -30.67465 -27.57120 -26.97152 -26.61630 -23.44709 -22.99530 -21.45697 -20.77083 -20.51228 -19.62539 -17.84645 -17.58231 -17.22836 -16.84652 -16.24911 -15.72528 -15.52259 -14.81485 -14.64280 -14.35032 -14.13193 -13.74489 -13.47374 -13.35514 -12.98886 -12.82942 -12.62360 -12.52300 -12.38576 -12.10326 -12.05066 -11.65587 -11.51119 -11.47478 -11.35260 -11.02332 -10.92176 -10.62264 -10.30486 -10.15653 -9.95976 -9.89341 -9.73825 -9.53386 -9.01934 -8.85318 -7.95690 -6.65814 -6.35158 -4.39280 1.06153 2.40831 2.75713 2.91380 3.02496 3.04993 3.09930 3.16049 3.19279 4.12402 4.26076 4.40891 4.72587 4.92183 4.96673 5.01900 5.04333 5.20943 5.32289 5.44461 5.63252 5.68523 5.71406 5.77633 5.80887 5.93413 5.96952 6.01676 6.06224 6.08768 6.22613 6.37449 6.43108 6.57467 6.68697 6.84024 6.88809 7.03080 7.06899 7.27143 7.39733 7.43964 7.93752 8.14932 8.27589 8.47134 8.81389 9.24542 10.76713 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.005428 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.782426 B = 5157.221925 C = 6718.012083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.453 3.547 5 O -0.502 6.502 6 C -0.106 4.106 7 C 0.189 3.811 8 H 0.051 0.949 9 C -0.537 4.537 10 H 0.089 0.911 11 C 0.086 3.914 12 N -0.877 5.877 13 Si 0.844 3.156 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.253 1.253 17 O -0.310 6.310 18 C 0.134 3.866 19 C -0.151 4.151 20 C -0.160 4.160 21 C 0.052 3.948 22 N -0.436 5.436 23 H 0.437 0.563 24 N -0.315 5.315 25 C 0.085 3.915 26 C -0.101 4.101 27 C -0.041 4.041 28 C -0.108 4.108 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.269 0.731 37 H 0.140 0.860 38 H 0.182 0.818 39 H 0.128 0.872 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 -10.510 1.495 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.297 3.703 5 O -0.389 6.389 6 C -0.144 4.144 7 C 0.133 3.867 8 H 0.068 0.932 9 C -0.574 4.574 10 H 0.107 0.893 11 C -0.119 4.119 12 N -0.513 5.513 13 Si 0.669 3.331 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.178 1.178 17 O -0.223 6.223 18 C 0.087 3.913 19 C -0.172 4.172 20 C -0.169 4.169 21 C -0.102 4.102 22 N -0.139 5.139 23 H 0.280 0.720 24 N -0.145 5.145 25 C -0.068 4.068 26 C -0.122 4.122 27 C -0.046 4.046 28 C -0.164 4.164 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.157 0.843 38 H 0.199 0.801 39 H 0.146 0.854 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.868 -11.327 1.985 11.650 hybrid contribution -0.262 -0.034 -1.945 1.963 sum -2.130 -11.361 0.040 11.559 Atomic orbital electron populations 1.21787 0.93130 1.02483 1.03384 1.22907 0.94967 0.81424 1.02250 1.86567 1.25816 1.31399 1.84650 1.24647 0.79781 0.94017 0.71884 1.90638 1.60147 1.43243 1.44852 1.22180 0.97331 0.88922 1.05986 1.20434 0.88162 0.94577 0.83483 0.93194 1.21304 1.42596 0.98269 0.95231 0.89302 1.24895 0.94018 0.94641 0.98348 1.69871 1.44690 1.12273 1.24447 0.87320 0.79582 0.82061 0.84092 1.19354 1.20243 1.17774 1.85851 1.30929 1.68235 1.37321 1.17872 0.86691 0.93842 0.92917 1.20392 0.93052 1.03772 0.99953 1.19409 0.97106 1.06374 0.94056 1.22501 0.89659 0.98584 0.99493 1.46097 1.16720 1.39391 1.11664 0.71972 1.77483 1.15550 1.27128 0.94362 1.20837 0.92572 0.97739 0.95637 1.19391 0.92710 1.03845 0.96266 1.18928 0.94761 0.96166 0.94743 1.20703 0.98503 1.03233 0.93992 0.91651 0.90703 0.91549 0.91731 0.91515 0.87087 0.87194 0.92055 0.84277 0.80141 0.85375 0.91352 0.91943 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -6.07 10.22 -39.24 -0.40 -6.47 16 4 C 0.45 8.73 7.84 36.00 0.28 9.01 16 5 O -0.50 -10.82 15.18 -23.93 -0.36 -11.19 16 6 C -0.11 -2.11 5.33 -27.88 -0.15 -2.26 16 7 C 0.19 4.32 0.75 -27.89 -0.02 4.30 16 8 H 0.05 1.21 3.33 -51.93 -0.17 1.03 16 9 C -0.54 -13.87 8.18 -34.44 -0.28 -14.15 16 10 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 11 C 0.09 2.25 5.47 -17.82 -0.10 2.15 16 12 N -0.88 -24.53 13.96 55.43 0.77 -23.75 16 13 Si 0.84 19.09 25.95 -169.99 -4.41 14.68 16 14 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.25 -5.63 5.91 56.52 0.33 -5.30 16 17 O -0.31 -6.98 7.96 -33.59 -0.27 -7.25 16 18 C 0.13 2.92 6.53 -39.67 -0.26 2.66 16 19 C -0.15 -3.30 8.70 -39.24 -0.34 -3.65 16 20 C -0.16 -3.14 6.33 -105.19 -0.67 -3.81 16 21 C 0.05 0.81 12.08 -16.57 -0.20 0.61 16 22 N -0.44 -6.13 7.19 30.85 0.22 -5.91 16 23 H 0.44 4.11 8.96 -182.70 -1.64 2.48 16 24 N -0.32 -5.56 12.70 33.26 0.42 -5.14 16 25 C 0.09 1.63 7.49 -83.04 -0.62 1.01 16 26 C -0.10 -1.79 9.65 -39.43 -0.38 -2.17 16 27 C -0.04 -0.77 5.85 -104.88 -0.61 -1.38 16 28 C -0.11 -1.65 9.72 36.01 0.35 -1.30 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 35 H 0.11 2.11 7.08 -51.93 -0.37 1.74 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.14 3.24 4.82 -52.49 -0.25 2.99 16 38 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 42 H 0.08 1.25 7.44 -51.93 -0.39 0.86 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -32.48 352.82 -7.76 -40.24 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.67 Total: 8.52 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.39 Total: -9.05 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 1.42 Total: -34.80 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.03 Total: -24.91 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.41 Total: 14.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.48 -7.76 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230223256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.365 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds