Wall clock time and date at job start Tue Mar 31 2020 13:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45205 * 109.47089 * 2 1 4 4 C 1.34225 * 117.00018 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00123 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00043 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47364 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46799 * 54.53550 * 7 6 4 9 9 C 1.50691 * 109.47511 * 174.53741 * 7 6 4 10 10 H 1.07996 * 119.99925 * 95.21316 * 9 7 6 11 11 C 1.37882 * 119.99884 * 275.22053 * 9 7 6 12 12 N 1.31516 * 119.99670 * 174.92776 * 11 9 7 13 13 Si 1.86801 * 119.99999 * 354.92518 * 11 9 7 14 14 H 1.48503 * 109.46856 * 94.67651 * 13 11 9 15 15 H 1.48497 * 109.46790 * 214.67250 * 13 11 9 16 16 H 1.48499 * 109.47129 * 334.67211 * 13 11 9 17 17 O 1.42895 * 109.47139 * 294.54301 * 7 6 4 18 18 C 1.35976 * 117.00197 * 155.47187 * 17 7 6 19 19 C 1.36059 * 119.19623 * 5.70555 * 18 17 7 20 20 C 1.41190 * 119.49514 * 179.74363 * 19 18 17 21 21 C 1.38220 * 134.75028 * 180.21862 * 20 19 18 22 22 N 1.34106 * 107.90279 * 180.27480 * 21 20 19 23 23 H 0.96999 * 125.03732 * 180.02562 * 22 21 20 24 24 N 1.39960 * 109.92926 * 0.02562 * 22 21 20 25 25 C 1.32122 * 108.95301 * 359.97438 * 24 22 21 26 26 C 1.41170 * 134.59035 * 180.02562 * 25 24 22 27 27 C 1.35562 * 119.67434 * 179.97438 * 26 25 24 28 28 C 1.50708 * 119.10872 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.47010 * 59.99977 * 1 2 3 30 30 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47135 * 300.00189 * 1 2 3 32 32 H 1.08998 * 109.47099 * 240.00360 * 2 1 3 33 33 H 1.09001 * 109.47010 * 120.00023 * 2 1 3 34 34 H 1.09004 * 109.46881 * 60.00555 * 6 4 3 35 35 H 1.08997 * 109.47420 * 300.00340 * 6 4 3 36 36 H 0.96999 * 119.99857 * 179.97438 * 12 11 9 37 37 H 1.08001 * 120.25704 * 359.97438 * 19 18 17 38 38 H 1.07994 * 126.04832 * 0.27624 * 21 20 19 39 39 H 1.08001 * 120.15735 * 359.93856 * 26 25 24 40 40 H 1.09006 * 109.46806 * 270.02120 * 28 27 26 41 41 H 1.08998 * 109.47170 * 30.02071 * 28 27 26 42 42 H 1.08996 * 109.46702 * 150.02476 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4487 2.8574 0.0014 8 1 5.7810 2.2423 -0.8348 9 6 6.0244 4.2434 -0.1344 10 1 6.3131 4.7969 0.7469 11 6 6.1826 4.8048 -1.3837 12 7 6.5908 6.0498 -1.4982 13 14 5.8171 3.7972 -2.9136 14 1 4.4233 4.0564 -3.3557 15 1 6.7591 4.1808 -3.9956 16 1 5.9784 2.3534 -2.6056 17 8 5.8940 2.2746 1.2278 18 6 7.1086 1.6636 1.2157 19 6 7.8777 1.7377 0.0957 20 6 9.1424 1.1101 0.0782 21 6 10.1557 0.9890 -0.8540 22 7 11.1374 0.2599 -0.3034 23 1 11.9693 0.0238 -0.7429 24 7 10.7838 -0.1098 0.9994 25 6 9.5882 0.3803 1.2749 26 6 8.7354 0.3394 2.3992 27 6 7.5349 0.9674 2.3542 28 6 6.6343 0.9151 3.5615 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5844 3.4700 0.8896 35 1 3.5852 3.4691 -0.8904 36 1 6.7024 6.4446 -2.3772 37 1 7.5252 2.2756 -0.7719 38 1 10.1567 1.4074 -1.8496 39 1 9.0378 -0.1902 3.2906 40 1 5.9823 0.0444 3.4909 41 1 7.2408 0.8426 4.4642 42 1 6.0286 1.8203 3.6023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230223256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:22 Heat of formation + Delta-G solvation = -55.131517 kcal Electronic energy + Delta-G solvation = -27079.586728 eV Core-core repulsion = 23219.017321 eV Total energy + Delta-G solvation = -3860.569408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18353 -41.51999 -40.23637 -37.85258 -37.17328 -35.06314 -33.27551 -33.20582 -32.56194 -32.11175 -29.02537 -28.41773 -28.25002 -25.00442 -24.16493 -22.91646 -22.20795 -21.92055 -21.15322 -19.52399 -19.05273 -18.82008 -18.45739 -17.57481 -17.21033 -16.96041 -16.36968 -16.22652 -15.85222 -15.38979 -15.15345 -15.04921 -14.89384 -14.48021 -14.29570 -14.01380 -13.76467 -13.66485 -13.48323 -13.42837 -13.16024 -12.89007 -12.78433 -12.67474 -12.48416 -12.45611 -12.10607 -11.85608 -11.64843 -11.50810 -11.48292 -11.26825 -11.14819 -10.87915 -10.69751 -9.33954 -8.38867 -8.17210 -6.47676 -0.31121 0.94032 1.22826 1.25158 1.31754 1.38447 1.50315 1.73251 1.89940 2.21622 2.64087 2.89933 2.96198 3.37193 3.77497 3.82801 4.02282 4.08321 4.12642 4.27054 4.29498 4.33572 4.37040 4.43045 4.46631 4.65885 4.73214 4.82666 4.88363 4.88787 4.94524 5.01912 5.10082 5.15987 5.19085 5.32295 5.46355 5.48831 5.52418 5.64839 5.86295 6.14031 6.33554 6.53165 6.61906 6.81080 6.85954 7.22172 8.77288 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.005428 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.782426 B = 5157.221925 C = 6718.012083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.363 6.363 4 C 0.463 3.537 5 O -0.528 6.528 6 C -0.107 4.107 7 C 0.197 3.803 8 H 0.040 0.960 9 C -0.535 4.535 10 H 0.043 0.957 11 C 0.044 3.956 12 N -0.923 5.923 13 Si 0.901 3.099 14 H -0.250 1.250 15 H -0.271 1.271 16 H -0.251 1.251 17 O -0.318 6.318 18 C 0.103 3.897 19 C -0.167 4.167 20 C -0.204 4.204 21 C 0.078 3.922 22 N -0.410 5.410 23 H 0.460 0.540 24 N -0.328 5.328 25 C 0.068 3.932 26 C -0.094 4.094 27 C -0.058 4.058 28 C -0.101 4.101 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.273 0.727 37 H 0.117 0.883 38 H 0.219 0.781 39 H 0.159 0.841 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 -12.642 0.851 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.281 6.281 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.145 4.145 7 C 0.141 3.859 8 H 0.058 0.942 9 C -0.573 4.573 10 H 0.061 0.939 11 C -0.157 4.157 12 N -0.561 5.561 13 Si 0.724 3.276 14 H -0.174 1.174 15 H -0.196 1.196 16 H -0.175 1.175 17 O -0.232 6.232 18 C 0.057 3.943 19 C -0.188 4.188 20 C -0.214 4.214 21 C -0.079 4.079 22 N -0.115 5.115 23 H 0.308 0.692 24 N -0.158 5.158 25 C -0.085 4.085 26 C -0.115 4.115 27 C -0.063 4.063 28 C -0.157 4.157 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.236 0.764 39 H 0.177 0.823 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.074 -13.482 1.351 13.707 hybrid contribution -0.083 0.577 -1.728 1.823 sum -2.157 -12.905 -0.376 13.090 Atomic orbital electron populations 1.21816 0.89994 1.04416 1.03766 1.23314 0.97372 0.79494 1.02334 1.86538 1.23868 1.33715 1.83941 1.24229 0.80620 0.93085 0.71352 1.90630 1.61011 1.43860 1.46238 1.21979 0.95430 0.90100 1.06998 1.20212 0.89761 0.92300 0.83640 0.94224 1.21281 1.42800 0.99341 0.93835 0.93890 1.25532 0.93666 0.95350 1.01174 1.69996 1.46598 1.14109 1.25429 0.86404 0.80432 0.80493 0.80278 1.17403 1.19580 1.17539 1.85825 1.31786 1.68681 1.36930 1.18355 0.86543 0.95081 0.94370 1.20350 0.94544 1.04526 0.99425 1.19669 0.97560 1.08131 0.96042 1.23022 0.88241 0.96633 1.00028 1.46134 1.17172 1.37629 1.10574 0.69221 1.77424 1.14937 1.27534 0.95931 1.21127 0.93203 0.98107 0.96039 1.19759 0.91859 1.02858 0.96974 1.19219 0.95844 0.96298 0.94934 1.20705 0.98364 1.02770 0.93901 0.91303 0.87955 0.91128 0.91743 0.91482 0.85985 0.86360 0.91760 0.86499 0.76450 0.82313 0.90487 0.88857 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.29 71.98 0.74 -1.62 16 2 C 0.05 1.20 6.19 71.98 0.45 1.64 16 3 O -0.36 -11.60 10.22 -51.36 -0.52 -12.13 16 4 C 0.46 17.68 7.84 71.23 0.56 18.24 16 5 O -0.53 -22.85 15.18 26.91 0.41 -22.44 16 6 C -0.11 -4.31 5.33 29.85 0.16 -4.15 16 7 C 0.20 9.30 0.75 29.85 0.02 9.32 16 8 H 0.04 1.97 3.33 -2.39 -0.01 1.97 16 9 C -0.54 -29.02 8.18 25.60 0.21 -28.81 16 10 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16 11 C 0.04 2.36 5.47 84.66 0.46 2.83 16 12 N -0.92 -53.38 13.96 21.45 0.30 -53.08 16 13 Si 0.90 39.74 25.95 68.60 1.78 41.52 16 14 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.25 -10.92 5.91 99.48 0.59 -10.33 16 17 O -0.32 -14.97 7.96 -79.96 -0.64 -15.60 16 18 C 0.10 4.65 6.53 22.21 0.14 4.79 16 19 C -0.17 -7.58 8.70 22.49 0.20 -7.38 16 20 C -0.20 -7.99 6.33 -20.23 -0.13 -8.12 16 21 C 0.08 2.25 12.08 84.34 1.02 3.27 16 22 N -0.41 -10.41 7.19 -56.30 -0.40 -10.82 16 23 H 0.46 7.05 8.96 -213.41 -1.91 5.14 16 24 N -0.33 -10.91 12.70 -48.69 -0.62 -11.53 16 25 C 0.07 2.52 7.49 42.15 0.32 2.84 16 26 C -0.09 -3.25 9.65 22.37 0.22 -3.03 16 27 C -0.06 -2.19 5.85 -20.03 -0.12 -2.31 16 28 C -0.10 -3.05 9.72 71.24 0.69 -2.35 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 33 H 0.07 1.66 8.13 -2.39 -0.02 1.65 16 34 H 0.12 4.56 8.14 -2.39 -0.02 4.54 16 35 H 0.12 4.50 7.08 -2.39 -0.02 4.48 16 36 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.12 5.68 4.82 -2.91 -0.01 5.67 16 38 H 0.22 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.16 4.35 8.06 -2.91 -0.02 4.32 16 40 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.09 2.18 8.06 -2.39 -0.02 2.16 16 42 H 0.06 2.02 7.44 -2.39 -0.02 2.01 16 Total: -1.00 -73.95 352.82 4.28 -69.68 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.96 Total: 29.24 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.94 Total: -14.85 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -0.72 Total: -75.42 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.75 Total: -50.17 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.78 Total: 41.52 kcal Total: -73.95 4.28 -69.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230223256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.546 kcal (2) G-P(sol) polarization free energy of solvation -73.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds