Wall clock time and date at job start Tue Mar 31 2020 12:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 O 1.42904 * 109.46951 * 239.99749 * 2 1 3 5 5 C 1.35641 * 116.99689 * 83.26842 * 4 2 1 6 6 C 1.38449 * 120.26605 * 354.92744 * 5 4 2 7 7 C 1.38312 * 120.05094 * 179.74828 * 6 5 4 8 8 C 1.38824 * 120.58813 * 0.56135 * 7 6 5 9 9 C 1.36483 * 120.53846 * 359.69757 * 8 7 6 10 10 C 1.40725 * 119.93425 * 0.02562 * 9 8 7 11 11 C 1.41145 * 120.29353 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00416 * 208.48997 * 11 10 9 13 13 C 1.39937 * 119.99935 * 28.48943 * 11 10 9 14 14 N 1.30865 * 120.00147 * 11.38484 * 13 11 10 15 15 Si 1.86802 * 119.99965 * 191.37754 * 13 11 10 16 16 H 1.48498 * 109.47077 * 60.00652 * 15 13 11 17 17 H 1.48504 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47409 * 300.00222 * 15 13 11 19 19 C 1.50699 * 109.46912 * 120.00353 * 2 1 3 20 20 C 1.36128 * 120.17584 * 95.00253 * 19 2 1 21 21 C 1.39335 * 120.99390 * 180.02562 * 20 19 2 22 22 C 1.36128 * 120.98544 * 359.97438 * 21 20 19 23 23 C 1.40499 * 119.65087 * 0.02562 * 22 21 20 24 24 C 1.40552 * 121.28559 * 179.97438 * 23 22 21 25 25 C 1.36095 * 119.65425 * 180.02562 * 24 23 22 26 26 C 1.39381 * 120.99140 * 0.02562 * 25 24 23 27 27 C 1.36086 * 120.99462 * 359.95967 * 26 25 24 28 28 C 1.40495 * 120.17400 * 275.01602 * 19 2 1 29 29 H 1.08999 * 109.47512 * 59.99869 * 1 2 3 30 30 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47036 * 299.99967 * 1 2 3 32 32 H 1.07995 * 119.97661 * 0.02924 * 6 5 4 33 33 H 1.08001 * 119.70599 * 180.28257 * 7 6 5 34 34 H 1.07998 * 119.72816 * 179.72498 * 8 7 6 35 35 H 1.08008 * 120.03464 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00019 * 180.02562 * 14 13 11 37 37 H 1.07999 * 119.50630 * 359.97438 * 20 19 2 38 38 H 1.07997 * 119.51070 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.17294 * 179.73118 * 22 21 20 40 40 H 1.07997 * 120.17737 * 0.04927 * 24 23 22 41 41 H 1.08000 * 119.50043 * 180.02562 * 25 24 23 42 42 H 1.07993 * 119.50092 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.17347 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0779 0.0518 -2.3106 6 6 1.6023 1.3516 -2.3434 7 6 1.6824 2.0892 -3.5107 8 6 2.2270 1.5345 -4.6609 9 6 2.6982 0.2536 -4.6570 10 6 2.6331 -0.5150 -3.4801 11 6 3.1188 -1.8402 -3.4674 12 1 2.6921 -2.5653 -2.7902 13 6 4.1531 -2.2147 -4.3324 14 7 4.8200 -1.3003 -4.9894 15 14 4.5819 -4.0198 -4.5492 16 1 3.3981 -4.7510 -5.0680 17 1 5.7054 -4.1496 -5.5117 18 1 4.9837 -4.5939 -3.2399 19 6 2.0323 -0.7105 1.2304 20 6 2.3571 -2.0312 1.1733 21 6 2.8226 -2.7051 2.3005 22 6 2.9665 -2.0620 3.4917 23 6 2.6413 -0.6987 3.5894 24 6 2.7763 -0.0012 4.8021 25 6 2.4511 1.3190 4.8594 26 6 1.9844 1.9928 3.7320 27 6 1.8412 1.3503 2.5409 28 6 2.1675 -0.0133 2.4427 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1726 1.7916 -1.4556 33 1 1.3138 3.1042 -3.5288 34 1 2.2786 2.1215 -5.5659 35 1 3.1207 -0.1697 -5.5564 36 1 5.5367 -1.5599 -5.5893 37 1 2.2516 -2.5650 0.2404 38 1 3.0729 -3.7531 2.2282 39 1 3.3244 -2.5982 4.3581 40 1 3.1366 -0.5102 5.6839 41 1 2.5561 1.8527 5.7924 42 1 1.7330 3.0405 3.8047 43 1 1.4788 1.8854 1.6757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230271626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:54 Heat of formation + Delta-G solvation = 22.490494 kcal Electronic energy + Delta-G solvation = -25654.006261 eV Core-core repulsion = 22207.652059 eV Total energy + Delta-G solvation = -3446.354201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.52682 -38.83845 -36.75502 -35.97146 -33.55185 -33.47788 -30.65925 -30.18931 -29.50853 -28.71192 -28.37049 -25.14125 -23.90193 -23.01820 -22.89123 -21.45349 -20.63199 -19.62431 -17.67687 -17.40883 -16.85777 -16.46747 -15.98483 -15.28590 -14.76575 -14.55904 -14.30598 -14.06412 -13.88205 -13.60868 -13.48957 -13.33052 -12.82930 -12.72529 -12.54106 -12.22377 -12.13682 -11.72199 -11.66123 -11.34249 -11.24779 -11.12956 -11.01049 -10.84596 -10.78717 -10.49648 -10.28910 -10.06329 -9.70448 -9.63472 -9.37697 -9.16177 -8.51706 -7.75602 -7.42606 -6.97206 -6.62396 -4.23067 0.59473 1.10631 2.11102 2.79191 2.99900 3.09544 3.11053 3.14519 3.23587 4.00221 4.07819 4.20939 4.64484 4.70531 4.87140 4.92152 5.02382 5.13463 5.20671 5.37661 5.40900 5.46328 5.51486 5.65154 5.70113 5.80401 5.88136 6.02915 6.06690 6.09230 6.21851 6.27912 6.30759 6.37463 6.45119 6.47409 6.50162 6.66236 6.80971 6.88903 6.97771 7.11157 7.15378 7.32994 7.39990 7.75105 7.80952 8.08354 8.24260 8.43159 8.74309 8.90401 9.09800 10.29975 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.004169 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.202321 B = 6715.151375 C = 8203.223365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 H 0.074 0.926 4 O -0.297 6.297 5 C 0.017 3.983 6 C -0.181 4.181 7 C -0.210 4.210 8 C -0.129 4.129 9 C -0.140 4.140 10 C 0.098 3.902 11 C -0.446 4.446 12 H 0.079 0.921 13 C 0.072 3.928 14 N -0.806 5.806 15 Si 0.909 3.091 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.065 4.065 20 C -0.088 4.088 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.053 4.053 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.105 4.105 28 C -0.040 4.040 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.279 0.721 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 1.281 14.927 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.067 3.933 3 H 0.091 0.909 4 O -0.212 6.212 5 C -0.027 4.027 6 C -0.200 4.200 7 C -0.230 4.230 8 C -0.148 4.148 9 C -0.159 4.159 10 C 0.096 3.904 11 C -0.476 4.476 12 H 0.097 0.903 13 C -0.144 4.144 14 N -0.433 5.433 15 Si 0.734 3.266 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.191 1.191 19 C -0.065 4.065 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.053 4.053 24 C -0.125 4.125 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.123 4.123 28 C -0.040 4.040 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.143 0.857 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.944 1.094 14.785 15.341 hybrid contribution 0.309 -0.428 -0.074 0.533 sum -3.635 0.666 14.711 15.168 Atomic orbital electron populations 1.22335 0.95072 1.03123 1.02319 1.20772 0.93461 0.95617 0.83446 0.90856 1.85970 1.82026 1.37929 1.15243 1.19199 1.07063 0.90677 0.85798 1.20647 1.06566 0.94753 0.98056 1.20155 1.10019 0.98724 0.94071 1.20400 1.01449 0.96329 0.96624 1.20931 1.03045 0.93916 0.98031 1.17048 0.91493 0.93935 0.87966 1.19341 1.15170 0.95589 1.17544 0.90265 1.25855 0.95131 0.99374 0.94026 1.69798 1.16914 1.34650 1.21902 0.86345 0.78548 0.82727 0.78944 1.18954 1.20474 1.19082 1.19553 0.99502 0.94486 0.92940 1.20885 0.96558 0.94292 0.98897 1.20933 0.98816 1.00180 0.92727 1.20969 1.01055 0.93329 0.98173 1.18010 1.00013 0.94060 0.93209 1.20977 1.00204 0.94720 0.96562 1.20798 0.99985 0.94787 0.98467 1.20807 1.00208 0.99961 0.92946 1.21125 0.99465 0.93510 0.98210 1.17830 0.99717 0.93730 0.92725 0.91134 0.91694 0.92028 0.88617 0.89407 0.89379 0.85698 0.91038 0.84493 0.85884 0.85843 0.85831 0.86275 0.86142 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.12 37.16 0.34 -2.31 16 2 C 0.12 2.22 1.85 -27.88 -0.05 2.17 16 3 H 0.07 1.31 4.97 -51.93 -0.26 1.05 16 4 O -0.30 -6.66 7.95 -18.62 -0.15 -6.81 16 5 C 0.02 0.41 6.62 -38.33 -0.25 0.16 16 6 C -0.18 -4.05 8.18 -39.48 -0.32 -4.37 16 7 C -0.21 -4.70 10.04 -39.34 -0.39 -5.09 16 8 C -0.13 -3.05 9.97 -40.00 -0.40 -3.45 16 9 C -0.14 -3.64 8.61 -39.28 -0.34 -3.98 16 10 C 0.10 2.64 5.56 -106.68 -0.59 2.05 16 11 C -0.45 -12.01 8.70 -37.84 -0.33 -12.34 16 12 H 0.08 2.09 7.69 -52.49 -0.40 1.69 16 13 C 0.07 1.83 5.24 -17.33 -0.09 1.74 16 14 N -0.81 -21.11 10.86 55.55 0.60 -20.51 16 15 Si 0.91 19.14 29.58 -169.99 -5.03 14.11 16 16 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 C -0.06 -1.08 5.07 -104.53 -0.53 -1.61 16 20 C -0.09 -1.45 9.28 -39.93 -0.37 -1.82 16 21 C -0.11 -1.49 9.95 -39.93 -0.40 -1.89 16 22 C -0.12 -1.49 9.77 -39.49 -0.39 -1.87 16 23 C -0.05 -0.73 5.74 -106.83 -0.61 -1.34 16 24 C -0.11 -1.21 9.77 -39.48 -0.39 -1.59 16 25 C -0.12 -1.30 9.95 -39.93 -0.40 -1.69 16 26 C -0.12 -1.38 9.95 -39.93 -0.40 -1.77 16 27 C -0.11 -1.41 9.18 -39.48 -0.36 -1.78 16 28 C -0.04 -0.61 5.74 -106.83 -0.61 -1.22 16 29 H 0.07 1.13 6.75 -51.93 -0.35 0.78 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 32 H 0.10 1.85 5.38 -52.49 -0.28 1.57 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.13 3.35 6.22 -52.48 -0.33 3.02 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.14 2.41 7.29 -52.49 -0.38 2.03 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.13 1.60 6.49 -52.49 -0.34 1.26 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -29.04 353.65 -11.41 -40.45 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.28 Total: 9.45 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: -6.89 Total: -42.02 kcal Atomic # 7 Polarization: -21.11 SS G_CDS: 0.60 Total: -20.51 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.15 Total: -6.81 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.04 -11.41 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230271626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.942 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds