Wall clock time and date at job start Tue Mar 31 2020 12:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 O 1.42904 * 109.46951 * 239.99749 * 2 1 3 5 5 C 1.35641 * 116.99689 * 83.26842 * 4 2 1 6 6 C 1.38449 * 120.26605 * 354.92744 * 5 4 2 7 7 C 1.38312 * 120.05094 * 179.74828 * 6 5 4 8 8 C 1.38824 * 120.58813 * 0.56135 * 7 6 5 9 9 C 1.36483 * 120.53846 * 359.69757 * 8 7 6 10 10 C 1.40725 * 119.93425 * 0.02562 * 9 8 7 11 11 C 1.41145 * 120.29353 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00416 * 208.48997 * 11 10 9 13 13 C 1.39937 * 119.99935 * 28.48943 * 11 10 9 14 14 N 1.30865 * 120.00147 * 11.38484 * 13 11 10 15 15 Si 1.86802 * 119.99965 * 191.37754 * 13 11 10 16 16 H 1.48498 * 109.47077 * 60.00652 * 15 13 11 17 17 H 1.48504 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47409 * 300.00222 * 15 13 11 19 19 C 1.50699 * 109.46912 * 120.00353 * 2 1 3 20 20 C 1.36128 * 120.17584 * 95.00253 * 19 2 1 21 21 C 1.39335 * 120.99390 * 180.02562 * 20 19 2 22 22 C 1.36128 * 120.98544 * 359.97438 * 21 20 19 23 23 C 1.40499 * 119.65087 * 0.02562 * 22 21 20 24 24 C 1.40552 * 121.28559 * 179.97438 * 23 22 21 25 25 C 1.36095 * 119.65425 * 180.02562 * 24 23 22 26 26 C 1.39381 * 120.99140 * 0.02562 * 25 24 23 27 27 C 1.36086 * 120.99462 * 359.95967 * 26 25 24 28 28 C 1.40495 * 120.17400 * 275.01602 * 19 2 1 29 29 H 1.08999 * 109.47512 * 59.99869 * 1 2 3 30 30 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47036 * 299.99967 * 1 2 3 32 32 H 1.07995 * 119.97661 * 0.02924 * 6 5 4 33 33 H 1.08001 * 119.70599 * 180.28257 * 7 6 5 34 34 H 1.07998 * 119.72816 * 179.72498 * 8 7 6 35 35 H 1.08008 * 120.03464 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00019 * 180.02562 * 14 13 11 37 37 H 1.07999 * 119.50630 * 359.97438 * 20 19 2 38 38 H 1.07997 * 119.51070 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.17294 * 179.73118 * 22 21 20 40 40 H 1.07997 * 120.17737 * 0.04927 * 24 23 22 41 41 H 1.08000 * 119.50043 * 180.02562 * 25 24 23 42 42 H 1.07993 * 119.50092 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.17347 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0779 0.0518 -2.3106 6 6 1.6023 1.3516 -2.3434 7 6 1.6824 2.0892 -3.5107 8 6 2.2270 1.5345 -4.6609 9 6 2.6982 0.2536 -4.6570 10 6 2.6331 -0.5150 -3.4801 11 6 3.1188 -1.8402 -3.4674 12 1 2.6921 -2.5653 -2.7902 13 6 4.1531 -2.2147 -4.3324 14 7 4.8200 -1.3003 -4.9894 15 14 4.5819 -4.0198 -4.5492 16 1 3.3981 -4.7510 -5.0680 17 1 5.7054 -4.1496 -5.5117 18 1 4.9837 -4.5939 -3.2399 19 6 2.0323 -0.7105 1.2304 20 6 2.3571 -2.0312 1.1733 21 6 2.8226 -2.7051 2.3005 22 6 2.9665 -2.0620 3.4917 23 6 2.6413 -0.6987 3.5894 24 6 2.7763 -0.0012 4.8021 25 6 2.4511 1.3190 4.8594 26 6 1.9844 1.9928 3.7320 27 6 1.8412 1.3503 2.5409 28 6 2.1675 -0.0133 2.4427 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1726 1.7916 -1.4556 33 1 1.3138 3.1042 -3.5288 34 1 2.2786 2.1215 -5.5659 35 1 3.1207 -0.1697 -5.5564 36 1 5.5367 -1.5599 -5.5893 37 1 2.2516 -2.5650 0.2404 38 1 3.0729 -3.7531 2.2282 39 1 3.3244 -2.5982 4.3581 40 1 3.1366 -0.5102 5.6839 41 1 2.5561 1.8527 5.7924 42 1 1.7330 3.0405 3.8047 43 1 1.4788 1.8854 1.6757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230271626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:53 Heat of formation + Delta-G solvation = 10.831685 kcal Electronic energy + Delta-G solvation = -25654.511824 eV Core-core repulsion = 22207.652059 eV Total energy + Delta-G solvation = -3446.859765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.63894 -40.45395 -38.27608 -37.19384 -35.46210 -34.70604 -31.99180 -31.27337 -31.13026 -30.38760 -29.63242 -27.06771 -25.15141 -24.09921 -23.91575 -23.07726 -22.37213 -21.01293 -19.42949 -18.64734 -18.19182 -17.72236 -17.30059 -16.82246 -16.23863 -16.06098 -15.94369 -15.35440 -15.15945 -14.85929 -14.70280 -14.46966 -14.36105 -14.18668 -13.91648 -13.58868 -13.47868 -13.32582 -13.04158 -12.82635 -12.70671 -12.66092 -12.42539 -12.23132 -12.12471 -11.87095 -11.69529 -11.60273 -11.47348 -11.15824 -11.06096 -10.72660 -9.53168 -9.34644 -8.85070 -8.77192 -8.51940 -6.23288 -0.40390 0.09368 0.94462 1.07882 1.11737 1.36259 1.47615 1.50926 2.09742 2.23021 2.58709 2.78898 3.16845 3.56815 3.69740 3.86960 3.93089 4.00454 4.05681 4.16416 4.20938 4.32952 4.35940 4.47049 4.50840 4.52381 4.59698 4.67079 4.74320 4.77754 4.86880 5.01927 5.09495 5.15558 5.20675 5.25214 5.29822 5.37835 5.44789 5.46604 5.54926 5.63002 5.73101 5.88039 5.91716 5.92961 6.11975 6.16349 6.32238 6.53252 6.82253 6.94583 7.24123 8.41411 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.004169 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.202321 B = 6715.151375 C = 8203.223365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 H 0.072 0.928 4 O -0.317 6.317 5 C 0.010 3.990 6 C -0.184 4.184 7 C -0.200 4.200 8 C -0.139 4.139 9 C -0.160 4.160 10 C 0.058 3.942 11 C -0.482 4.482 12 H 0.066 0.934 13 C 0.032 3.968 14 N -0.837 5.837 15 Si 0.978 3.022 16 H -0.260 1.260 17 H -0.266 1.266 18 H -0.265 1.265 19 C -0.088 4.088 20 C -0.110 4.110 21 C -0.125 4.125 22 C -0.103 4.103 23 C -0.073 4.073 24 C -0.106 4.106 25 C -0.121 4.121 26 C -0.111 4.111 27 C -0.132 4.132 28 C -0.057 4.057 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.285 0.715 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 2.446 18.030 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.090 0.910 4 O -0.233 6.233 5 C -0.035 4.035 6 C -0.202 4.202 7 C -0.220 4.220 8 C -0.157 4.157 9 C -0.180 4.180 10 C 0.056 3.944 11 C -0.513 4.513 12 H 0.084 0.916 13 C -0.181 4.181 14 N -0.465 5.465 15 Si 0.799 3.201 16 H -0.184 1.184 17 H -0.190 1.190 18 H -0.189 1.189 19 C -0.088 4.088 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.121 4.121 23 C -0.073 4.073 24 C -0.123 4.123 25 C -0.139 4.139 26 C -0.129 4.129 27 C -0.150 4.150 28 C -0.057 4.057 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.165 0.835 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.099 2.277 17.895 18.499 hybrid contribution 0.290 -0.603 -0.840 1.074 sum -3.810 1.674 17.055 17.555 Atomic orbital electron populations 1.22249 0.93421 1.02976 1.03200 1.21004 0.94771 0.95335 0.82348 0.91003 1.85950 1.82358 1.39042 1.15931 1.19390 1.06403 0.91573 0.86097 1.20998 1.05894 0.93895 0.99440 1.20625 1.07991 1.00137 0.93202 1.20693 1.01087 0.95618 0.98324 1.20908 1.04388 0.95274 0.97427 1.17432 0.93022 0.94634 0.89355 1.19457 1.16782 0.96004 1.19017 0.91560 1.26637 0.94413 1.03771 0.93237 1.69857 1.17500 1.36558 1.22610 0.85316 0.78651 0.77100 0.79007 1.18438 1.18985 1.18947 1.19547 1.01261 0.94723 0.93248 1.20850 0.98267 0.94677 0.99016 1.21090 0.99561 1.01183 0.92451 1.21377 0.98946 0.93152 0.98596 1.18387 1.00274 0.94760 0.93843 1.21362 0.99339 0.95177 0.96448 1.21251 0.98416 0.94731 0.99484 1.21210 0.98216 1.01220 0.92267 1.21228 1.01260 0.93085 0.99437 1.18003 1.00487 0.94673 0.92509 0.91763 0.92404 0.89356 0.85590 0.85703 0.86908 0.87404 0.90456 0.87327 0.84032 0.82235 0.82668 0.82793 0.83492 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 9.12 71.98 0.66 -4.41 16 2 C 0.12 4.51 1.85 29.85 0.06 4.57 16 3 H 0.07 2.62 4.97 -2.39 -0.01 2.61 16 4 O -0.32 -15.13 7.95 -89.55 -0.71 -15.84 16 5 C 0.01 0.50 6.62 23.08 0.15 0.66 16 6 C -0.18 -8.16 8.18 22.34 0.18 -7.98 16 7 C -0.20 -8.69 10.04 22.43 0.23 -8.46 16 8 C -0.14 -6.56 9.97 22.00 0.22 -6.34 16 9 C -0.16 -8.72 8.61 22.47 0.19 -8.53 16 10 C 0.06 3.29 5.56 -21.20 -0.12 3.17 16 11 C -0.48 -27.70 8.70 23.40 0.20 -27.50 16 12 H 0.07 3.81 7.69 -2.91 -0.02 3.79 16 13 C 0.03 1.69 5.24 85.25 0.45 2.14 16 14 N -0.84 -45.87 10.86 21.83 0.24 -45.63 16 15 Si 0.98 40.81 29.58 68.60 2.03 42.84 16 16 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 17 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 C -0.09 -3.05 5.07 -19.81 -0.10 -3.15 16 20 C -0.11 -3.85 9.28 22.04 0.20 -3.65 16 21 C -0.13 -3.45 9.95 22.04 0.22 -3.23 16 22 C -0.10 -2.41 9.77 22.33 0.22 -2.20 16 23 C -0.07 -1.85 5.74 -21.30 -0.12 -1.97 16 24 C -0.11 -1.98 9.77 22.34 0.22 -1.76 16 25 C -0.12 -2.04 9.95 22.05 0.22 -1.82 16 26 C -0.11 -2.17 9.95 22.04 0.22 -1.95 16 27 C -0.13 -3.36 9.18 22.33 0.21 -3.16 16 28 C -0.06 -1.69 5.74 -21.30 -0.12 -1.81 16 29 H 0.06 2.06 6.75 -2.39 -0.02 2.05 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 2.26 8.05 -2.39 -0.02 2.24 16 32 H 0.13 4.73 5.38 -2.91 -0.02 4.72 16 33 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 35 H 0.11 6.12 6.22 -2.91 -0.02 6.10 16 36 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 37 H 0.11 4.28 7.29 -2.91 -0.02 4.26 16 38 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 43 H 0.13 3.08 6.49 -2.91 -0.02 3.06 16 Total: -1.00 -67.44 353.65 5.95 -61.49 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 1.02 Total: 34.51 kcal Atomic # 6 Polarization: -80.74 SS G_CDS: 3.38 Total: -77.37 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.24 Total: -45.63 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.71 Total: -15.84 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -67.44 5.95 -61.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230271626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.322 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds