Wall clock time and date at job start Tue Mar 31 2020 12:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47115 * 2 1 4 4 O 1.42897 * 109.47275 * 239.99666 * 2 1 3 5 5 C 1.35642 * 117.00022 * 84.41794 * 4 2 1 6 6 C 1.38451 * 120.26382 * 354.38708 * 5 4 2 7 7 C 1.38307 * 120.04985 * 180.26069 * 6 5 4 8 8 C 1.38821 * 120.59041 * 359.73805 * 7 6 5 9 9 C 1.36492 * 120.53879 * 359.97438 * 8 7 6 10 10 C 1.40718 * 119.92969 * 0.02562 * 9 8 7 11 11 C 1.41153 * 120.28922 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99676 * 207.13305 * 11 10 9 13 13 C 1.39931 * 120.00251 * 27.13613 * 11 10 9 14 14 N 1.30860 * 120.00096 * 201.08111 * 13 11 10 15 15 Si 1.86802 * 119.99964 * 21.08109 * 13 11 10 16 16 H 1.48502 * 109.47156 * 270.00147 * 15 13 11 17 17 H 1.48504 * 109.47209 * 29.99958 * 15 13 11 18 18 H 1.48498 * 109.47468 * 150.00025 * 15 13 11 19 19 C 1.50702 * 109.46800 * 119.99636 * 2 1 3 20 20 C 1.39374 * 119.50524 * 84.73032 * 19 2 1 21 21 C 1.36089 * 120.98881 * 179.77020 * 20 19 2 22 22 C 1.40536 * 119.64996 * 0.47984 * 21 20 19 23 23 C 1.40546 * 121.27845 * 179.75910 * 22 21 20 24 24 C 1.36101 * 119.65084 * 180.02562 * 23 22 21 25 25 C 1.39371 * 120.98896 * 359.97438 * 24 23 22 26 26 C 1.36092 * 120.99125 * 0.06952 * 25 24 23 27 27 C 1.40539 * 119.65536 * 359.91276 * 26 25 24 28 28 C 1.36091 * 119.50559 * 264.99813 * 19 2 1 29 29 H 1.09000 * 109.47096 * 59.99978 * 1 2 3 30 30 H 1.09004 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47529 * 300.00388 * 1 2 3 32 32 H 1.07996 * 119.97519 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.70747 * 179.72217 * 7 6 5 34 34 H 1.08002 * 119.73199 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.03300 * 179.97438 * 9 8 7 36 36 H 0.96995 * 120.00322 * 354.93471 * 14 13 11 37 37 H 1.08002 * 119.50209 * 359.97438 * 20 19 2 38 38 H 1.08000 * 120.17640 * 180.25521 * 21 20 19 39 39 H 1.07995 * 120.17751 * 359.97438 * 23 22 21 40 40 H 1.07995 * 119.50298 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.50991 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.17564 * 179.97438 * 26 25 24 43 43 H 1.08010 * 120.17246 * 359.96005 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1008 0.0581 -2.3049 6 6 1.6366 1.3620 -2.3366 7 6 1.7302 2.1024 -3.5011 8 6 2.2926 1.5521 -4.6448 9 6 2.7632 0.2709 -4.6388 10 6 2.6792 -0.5024 -3.4662 11 6 3.1630 -1.8284 -3.4516 12 1 2.7399 -2.5501 -2.7684 13 6 4.1907 -2.2079 -4.3221 14 7 4.3649 -3.4707 -4.6178 15 14 5.3139 -0.9118 -5.0623 16 1 4.7400 -0.4340 -6.3459 17 1 5.4401 0.2299 -4.1211 18 1 6.6547 -1.5008 -5.3085 19 6 2.0323 -0.7104 1.2305 20 6 2.1560 -2.0985 1.2193 21 6 2.6108 -2.7703 2.3120 22 6 2.9521 -2.0575 3.4741 23 6 3.4204 -2.7169 4.6235 24 6 3.7410 -1.9938 5.7311 25 6 3.6126 -0.6061 5.7439 26 6 3.1617 0.0661 4.6499 27 6 2.8212 -0.6464 3.4874 28 6 2.3530 0.0128 2.3379 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.1969 1.7999 -1.4528 33 1 1.3623 3.1176 -3.5210 34 1 2.3591 2.1428 -5.5465 35 1 3.1988 -0.1492 -5.5333 36 1 3.8304 -4.1500 -4.1778 37 1 1.8901 -2.6490 0.3290 38 1 2.7054 -3.8459 2.2875 39 1 3.5245 -3.7918 4.6282 40 1 4.1009 -2.5029 6.6128 41 1 3.8735 -0.0560 6.6359 42 1 3.0670 1.1417 4.6745 43 1 2.2485 1.0878 2.3333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230272947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:00 Heat of formation + Delta-G solvation = 17.744990 kcal Electronic energy + Delta-G solvation = -25303.434198 eV Core-core repulsion = 21856.874216 eV Total energy + Delta-G solvation = -3446.559982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.45863 -39.13393 -37.17032 -35.89761 -33.68533 -32.97194 -31.85858 -30.27531 -29.61232 -28.77169 -28.59828 -24.77855 -24.03743 -23.25697 -22.24001 -21.93546 -20.65206 -20.21649 -18.17088 -17.44176 -17.21022 -16.59969 -16.05695 -15.03997 -14.78036 -14.69680 -14.57747 -14.30243 -13.83266 -13.62028 -13.54716 -13.35548 -13.20330 -12.98949 -12.60683 -12.51390 -12.23504 -12.00284 -11.87561 -11.56616 -11.27727 -11.11379 -10.88133 -10.80576 -10.61659 -10.50323 -10.35578 -10.03972 -9.90703 -9.68898 -9.40334 -8.96036 -8.49095 -7.87385 -7.78154 -7.35885 -7.08192 -4.39061 0.53591 1.02326 2.06198 2.60542 2.68492 2.99468 3.22520 3.38580 3.57087 3.98973 4.05344 4.16018 4.56129 4.59688 4.76693 4.82590 4.94434 5.07311 5.16124 5.27500 5.33527 5.37794 5.45800 5.46581 5.56093 5.74858 5.76230 5.89216 5.94376 5.96524 6.07179 6.12547 6.21716 6.26271 6.27810 6.36879 6.41014 6.61918 6.65768 6.67707 6.82199 6.88890 7.03514 7.04439 7.45486 7.50851 7.63339 7.79117 7.95954 8.18532 8.49158 8.63596 8.90807 10.04677 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.003617 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.195940 B = 7740.214164 C = 8723.207566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 H 0.074 0.926 4 O -0.295 6.295 5 C 0.021 3.979 6 C -0.169 4.169 7 C -0.223 4.223 8 C -0.098 4.098 9 C -0.234 4.234 10 C 0.087 3.913 11 C -0.498 4.498 12 H 0.080 0.920 13 C 0.042 3.958 14 N -0.815 5.815 15 Si 1.073 2.927 16 H -0.276 1.276 17 H -0.264 1.264 18 H -0.290 1.290 19 C -0.062 4.062 20 C -0.080 4.080 21 C -0.114 4.114 22 C -0.051 4.051 23 C -0.105 4.105 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.104 4.104 27 C -0.051 4.051 28 C -0.105 4.105 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.286 0.714 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 4.288 16.164 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.063 3.937 3 H 0.092 0.908 4 O -0.210 6.210 5 C -0.023 4.023 6 C -0.188 4.188 7 C -0.242 4.242 8 C -0.116 4.116 9 C -0.253 4.253 10 C 0.084 3.916 11 C -0.527 4.527 12 H 0.098 0.902 13 C -0.177 4.177 14 N -0.438 5.438 15 Si 0.899 3.101 16 H -0.203 1.203 17 H -0.189 1.189 18 H -0.217 1.217 19 C -0.062 4.062 20 C -0.098 4.098 21 C -0.132 4.132 22 C -0.051 4.051 23 C -0.123 4.123 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.122 4.122 27 C -0.051 4.051 28 C -0.123 4.123 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.663 4.161 15.147 15.796 hybrid contribution -1.460 -0.110 1.128 1.848 sum -3.123 4.052 16.274 17.060 Atomic orbital electron populations 1.22324 0.95014 1.03112 1.02369 1.20950 0.93670 0.95568 0.83471 0.90819 1.86014 1.82011 1.37389 1.15592 1.19081 1.06587 0.90518 0.86082 1.20740 1.05257 0.94461 0.98296 1.20114 1.11046 0.99116 0.93943 1.20284 0.99209 0.95282 0.96818 1.20675 1.11130 0.96131 0.97352 1.17178 0.92489 0.93545 0.88428 1.20467 1.17175 0.95554 1.19472 0.90163 1.27253 0.97324 0.99972 0.93165 1.70549 1.39163 1.02039 1.32033 0.83605 0.74675 0.74438 0.77339 1.20289 1.18903 1.21750 1.19491 0.98331 0.94210 0.94199 1.20832 0.96888 0.93828 0.98294 1.21033 0.99909 0.99786 0.92454 1.18129 0.99652 0.92736 0.94597 1.21037 0.98925 0.99744 0.92576 1.20800 1.00747 0.94231 0.98350 1.20787 1.00439 0.94496 0.98449 1.21004 0.99106 0.99609 0.92483 1.17987 1.00026 0.92723 0.94320 1.20765 0.99768 0.99533 0.92253 0.91232 0.91701 0.91885 0.88139 0.88883 0.88803 0.87189 0.90275 0.84941 0.85503 0.85724 0.86258 0.86246 0.85738 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.14 37.16 0.34 -2.19 16 2 C 0.12 2.07 2.41 -27.88 -0.07 2.00 16 3 H 0.07 1.22 6.24 -51.93 -0.32 0.90 16 4 O -0.30 -6.51 8.23 -18.63 -0.15 -6.67 16 5 C 0.02 0.51 6.63 -38.33 -0.25 0.25 16 6 C -0.17 -3.57 8.22 -39.48 -0.32 -3.90 16 7 C -0.22 -4.67 10.04 -39.34 -0.39 -5.06 16 8 C -0.10 -2.14 9.97 -40.00 -0.40 -2.54 16 9 C -0.23 -5.71 7.32 -39.28 -0.29 -6.00 16 10 C 0.09 2.26 5.16 -106.68 -0.55 1.71 16 11 C -0.50 -13.69 9.07 -37.84 -0.34 -14.03 16 12 H 0.08 2.31 7.85 -52.48 -0.41 1.90 16 13 C 0.04 1.12 5.38 -17.33 -0.09 1.03 16 14 N -0.82 -22.17 13.66 55.55 0.76 -21.41 16 15 Si 1.07 24.81 25.02 -169.99 -4.25 20.55 16 16 H -0.28 -6.01 6.38 56.52 0.36 -5.65 16 17 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 19 C -0.06 -0.99 4.97 -104.97 -0.52 -1.51 16 20 C -0.08 -1.30 9.25 -39.93 -0.37 -1.66 16 21 C -0.11 -1.61 9.77 -39.49 -0.39 -2.00 16 22 C -0.05 -0.70 5.74 -106.83 -0.61 -1.31 16 23 C -0.10 -1.19 9.77 -39.48 -0.39 -1.58 16 24 C -0.12 -1.24 9.95 -39.93 -0.40 -1.64 16 25 C -0.12 -1.24 9.95 -39.93 -0.40 -1.64 16 26 C -0.10 -1.17 9.77 -39.49 -0.39 -1.55 16 27 C -0.05 -0.69 5.74 -106.83 -0.61 -1.30 16 28 C -0.11 -1.47 9.36 -39.49 -0.37 -1.84 16 29 H 0.07 1.07 6.84 -51.93 -0.36 0.72 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.83 5.41 -52.49 -0.28 1.55 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.11 2.66 4.42 -52.49 -0.23 2.43 16 36 H 0.29 7.58 8.73 -40.82 -0.36 7.23 16 37 H 0.13 2.27 7.59 -52.49 -0.40 1.87 16 38 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.13 1.47 8.04 -52.48 -0.42 1.05 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -29.27 352.91 -10.57 -39.84 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.43 Total: 7.12 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: -6.81 Total: -44.75 kcal Atomic # 7 Polarization: -22.17 SS G_CDS: 0.76 Total: -21.41 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.15 Total: -6.67 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -4.25 Total: 20.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.27 -10.57 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230272947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.581 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds