Wall clock time and date at job start Tue Mar 31 2020 12:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47115 * 2 1 4 4 O 1.42897 * 109.47275 * 239.99666 * 2 1 3 5 5 C 1.35642 * 117.00022 * 84.41794 * 4 2 1 6 6 C 1.38451 * 120.26382 * 354.38708 * 5 4 2 7 7 C 1.38307 * 120.04985 * 180.26069 * 6 5 4 8 8 C 1.38821 * 120.59041 * 359.73805 * 7 6 5 9 9 C 1.36492 * 120.53879 * 359.97438 * 8 7 6 10 10 C 1.40718 * 119.92969 * 0.02562 * 9 8 7 11 11 C 1.41153 * 120.28922 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99676 * 207.13305 * 11 10 9 13 13 C 1.39931 * 120.00251 * 27.13613 * 11 10 9 14 14 N 1.30860 * 120.00096 * 201.08111 * 13 11 10 15 15 Si 1.86802 * 119.99964 * 21.08109 * 13 11 10 16 16 H 1.48502 * 109.47156 * 270.00147 * 15 13 11 17 17 H 1.48504 * 109.47209 * 29.99958 * 15 13 11 18 18 H 1.48498 * 109.47468 * 150.00025 * 15 13 11 19 19 C 1.50702 * 109.46800 * 119.99636 * 2 1 3 20 20 C 1.39374 * 119.50524 * 84.73032 * 19 2 1 21 21 C 1.36089 * 120.98881 * 179.77020 * 20 19 2 22 22 C 1.40536 * 119.64996 * 0.47984 * 21 20 19 23 23 C 1.40546 * 121.27845 * 179.75910 * 22 21 20 24 24 C 1.36101 * 119.65084 * 180.02562 * 23 22 21 25 25 C 1.39371 * 120.98896 * 359.97438 * 24 23 22 26 26 C 1.36092 * 120.99125 * 0.06952 * 25 24 23 27 27 C 1.40539 * 119.65536 * 359.91276 * 26 25 24 28 28 C 1.36091 * 119.50559 * 264.99813 * 19 2 1 29 29 H 1.09000 * 109.47096 * 59.99978 * 1 2 3 30 30 H 1.09004 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47529 * 300.00388 * 1 2 3 32 32 H 1.07996 * 119.97519 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.70747 * 179.72217 * 7 6 5 34 34 H 1.08002 * 119.73199 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.03300 * 179.97438 * 9 8 7 36 36 H 0.96995 * 120.00322 * 354.93471 * 14 13 11 37 37 H 1.08002 * 119.50209 * 359.97438 * 20 19 2 38 38 H 1.08000 * 120.17640 * 180.25521 * 21 20 19 39 39 H 1.07995 * 120.17751 * 359.97438 * 23 22 21 40 40 H 1.07995 * 119.50298 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.50991 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.17564 * 179.97438 * 26 25 24 43 43 H 1.08010 * 120.17246 * 359.96005 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1008 0.0581 -2.3049 6 6 1.6366 1.3620 -2.3366 7 6 1.7302 2.1024 -3.5011 8 6 2.2926 1.5521 -4.6448 9 6 2.7632 0.2709 -4.6388 10 6 2.6792 -0.5024 -3.4662 11 6 3.1630 -1.8284 -3.4516 12 1 2.7399 -2.5501 -2.7684 13 6 4.1907 -2.2079 -4.3221 14 7 4.3649 -3.4707 -4.6178 15 14 5.3139 -0.9118 -5.0623 16 1 4.7400 -0.4340 -6.3459 17 1 5.4401 0.2299 -4.1211 18 1 6.6547 -1.5008 -5.3085 19 6 2.0323 -0.7104 1.2305 20 6 2.1560 -2.0985 1.2193 21 6 2.6108 -2.7703 2.3120 22 6 2.9521 -2.0575 3.4741 23 6 3.4204 -2.7169 4.6235 24 6 3.7410 -1.9938 5.7311 25 6 3.6126 -0.6061 5.7439 26 6 3.1617 0.0661 4.6499 27 6 2.8212 -0.6464 3.4874 28 6 2.3530 0.0128 2.3379 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.1969 1.7999 -1.4528 33 1 1.3623 3.1176 -3.5210 34 1 2.3591 2.1428 -5.5465 35 1 3.1988 -0.1492 -5.5333 36 1 3.8304 -4.1500 -4.1778 37 1 1.8901 -2.6490 0.3290 38 1 2.7054 -3.8459 2.2875 39 1 3.5245 -3.7918 4.6282 40 1 4.1009 -2.5029 6.6128 41 1 3.8735 -0.0560 6.6359 42 1 3.0670 1.1417 4.6745 43 1 2.2485 1.0878 2.3333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230272947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:59 Heat of formation + Delta-G solvation = 4.467976 kcal Electronic energy + Delta-G solvation = -25304.009933 eV Core-core repulsion = 21856.874216 eV Total energy + Delta-G solvation = -3447.135716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54037 -40.67406 -38.61775 -37.19944 -35.61071 -34.05892 -33.03277 -32.04470 -30.67606 -30.48639 -29.66225 -26.63641 -25.26209 -24.28441 -23.73008 -22.92065 -22.28112 -21.73610 -20.10063 -18.87520 -18.25106 -17.82670 -17.17228 -16.49958 -16.43414 -16.11602 -15.90929 -15.63333 -15.21231 -15.15235 -14.79912 -14.54077 -14.31661 -14.30690 -14.08824 -13.99073 -13.73777 -13.34964 -13.10323 -13.01887 -12.67767 -12.36020 -12.29777 -12.23227 -12.03329 -11.89560 -11.73570 -11.56080 -11.44270 -11.30753 -10.92010 -10.83625 -9.66999 -9.51625 -9.29990 -8.92271 -8.84246 -6.42163 -0.43349 0.01179 0.77289 0.88110 1.08422 1.34996 1.54344 1.74800 1.98851 2.18341 2.58399 2.65259 3.14195 3.48502 3.57041 3.67212 3.92715 3.94633 4.03086 4.15198 4.21842 4.25581 4.28975 4.39823 4.42084 4.44823 4.51382 4.55127 4.71030 4.74752 4.84233 4.86775 4.96297 5.06023 5.12806 5.17712 5.22606 5.28293 5.31029 5.48149 5.52969 5.60417 5.62937 5.66110 5.76286 5.86329 5.97487 6.07684 6.11301 6.33896 6.51091 6.74886 7.11371 8.01267 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.003617 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.195940 B = 7740.214164 C = 8723.207566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 H 0.084 0.916 4 O -0.323 6.323 5 C 0.014 3.986 6 C -0.171 4.171 7 C -0.196 4.196 8 C -0.110 4.110 9 C -0.237 4.237 10 C 0.050 3.950 11 C -0.535 4.535 12 H 0.039 0.961 13 C 0.008 3.992 14 N -0.848 5.848 15 Si 1.106 2.894 16 H -0.251 1.251 17 H -0.267 1.267 18 H -0.281 1.281 19 C -0.088 4.088 20 C -0.110 4.110 21 C -0.116 4.116 22 C -0.069 4.069 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.069 4.069 28 C -0.097 4.097 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.274 0.726 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 8.409 18.600 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.060 3.940 3 H 0.102 0.898 4 O -0.239 6.239 5 C -0.031 4.031 6 C -0.190 4.190 7 C -0.215 4.215 8 C -0.128 4.128 9 C -0.257 4.257 10 C 0.048 3.952 11 C -0.565 4.565 12 H 0.057 0.943 13 C -0.204 4.204 14 N -0.472 5.472 15 Si 0.927 3.073 16 H -0.176 1.176 17 H -0.192 1.192 18 H -0.208 1.208 19 C -0.088 4.088 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.069 4.069 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.130 4.130 27 C -0.069 4.069 28 C -0.115 4.115 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.167 0.833 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.773 8.284 17.589 19.522 hybrid contribution -1.571 -1.190 0.690 2.088 sum -3.343 7.093 18.278 19.890 Atomic orbital electron populations 1.22268 0.93405 1.02728 1.03588 1.21251 0.94970 0.95687 0.82076 0.89796 1.86015 1.82362 1.38925 1.16585 1.19357 1.05825 0.91626 0.86244 1.21156 1.04513 0.93235 1.00089 1.20752 1.07347 1.00585 0.92795 1.20719 0.98691 0.94517 0.98901 1.20868 1.10907 0.97251 0.96642 1.17452 0.94032 0.93423 0.90331 1.20296 1.19311 0.96261 1.20617 0.94300 1.28309 0.97792 1.00959 0.93354 1.70624 1.40408 1.02349 1.33839 0.83221 0.73822 0.72582 0.77723 1.17647 1.19183 1.20762 1.19457 1.00662 0.94007 0.94672 1.20698 0.99484 0.94548 0.98107 1.21200 0.99264 1.00504 0.92407 1.18392 1.00186 0.93355 0.95003 1.21291 0.99316 1.00893 0.92339 1.21253 0.98796 0.94619 0.98665 1.21257 0.98537 0.94683 0.99124 1.21315 0.98923 1.00937 0.91791 1.18298 1.00415 0.92912 0.95239 1.21021 0.98299 1.00610 0.91533 0.91704 0.93020 0.88652 0.84730 0.84532 0.85081 0.87427 0.91583 0.88053 0.84397 0.84163 0.83152 0.82910 0.83290 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.76 9.14 71.98 0.66 -4.10 16 2 C 0.12 4.02 2.41 29.85 0.07 4.10 16 3 H 0.08 2.65 6.24 -2.38 -0.01 2.64 16 4 O -0.32 -15.10 8.23 -89.57 -0.74 -15.83 16 5 C 0.01 0.68 6.63 23.08 0.15 0.83 16 6 C -0.17 -6.82 8.22 22.34 0.18 -6.63 16 7 C -0.20 -7.32 10.04 22.43 0.23 -7.09 16 8 C -0.11 -4.46 9.97 22.00 0.22 -4.24 16 9 C -0.24 -11.49 7.32 22.47 0.16 -11.32 16 10 C 0.05 2.71 5.16 -21.20 -0.11 2.60 16 11 C -0.53 -31.86 9.07 23.40 0.21 -31.65 16 12 H 0.04 2.52 7.85 -2.91 -0.02 2.50 16 13 C 0.01 0.45 5.38 85.25 0.46 0.91 16 14 N -0.85 -49.60 13.66 21.83 0.30 -49.30 16 15 Si 1.11 51.24 25.02 68.60 1.72 52.96 16 16 H -0.25 -10.51 6.38 99.48 0.63 -9.88 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.09 -2.90 4.97 -20.09 -0.10 -3.00 16 20 C -0.11 -3.90 9.25 22.04 0.20 -3.70 16 21 C -0.12 -3.51 9.77 22.33 0.22 -3.29 16 22 C -0.07 -1.88 5.74 -21.30 -0.12 -2.00 16 23 C -0.12 -2.54 9.77 22.34 0.22 -2.33 16 24 C -0.12 -1.92 9.95 22.05 0.22 -1.70 16 25 C -0.12 -1.88 9.95 22.04 0.22 -1.66 16 26 C -0.11 -2.15 9.77 22.33 0.22 -1.93 16 27 C -0.07 -1.77 5.74 -21.30 -0.12 -1.89 16 28 C -0.10 -2.61 9.36 22.33 0.21 -2.40 16 29 H 0.06 1.92 6.84 -2.39 -0.02 1.91 16 30 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.14 4.39 5.41 -2.91 -0.02 4.37 16 33 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 34 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 35 H 0.11 5.17 4.42 -2.91 -0.01 5.16 16 36 H 0.27 16.05 8.73 -92.71 -0.81 15.24 16 37 H 0.10 4.08 7.59 -2.91 -0.02 4.05 16 38 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.15 3.14 8.04 -2.91 -0.02 3.12 16 Total: -1.00 -69.54 352.91 5.58 -63.95 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.91 Total: 28.72 kcal Atomic # 6 Polarization: -83.90 SS G_CDS: 3.40 Total: -80.50 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.30 Total: -49.30 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.74 Total: -15.83 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 1.72 Total: 52.96 kcal Total: -69.54 5.58 -63.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230272947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.420 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds