Wall clock time and date at job start Tue Mar 31 2020 12:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46882 * 2 1 4 4 O 1.42895 * 109.47046 * 119.99591 * 2 1 3 5 5 C 1.35638 * 117.00064 * 274.03868 * 4 2 1 6 6 C 1.38446 * 120.27086 * 5.38449 * 5 4 2 7 7 C 1.38305 * 120.05573 * 180.02562 * 6 5 4 8 8 C 1.38816 * 120.59034 * 359.97438 * 7 6 5 9 9 C 1.36487 * 120.54079 * 359.97438 * 8 7 6 10 10 C 1.40731 * 119.92896 * 0.27892 * 9 8 7 11 11 C 1.41148 * 120.29187 * 179.72276 * 10 9 8 12 12 H 1.07998 * 120.00002 * 207.54249 * 11 10 9 13 13 C 1.39940 * 119.99919 * 27.54127 * 11 10 9 14 14 N 1.30863 * 119.99892 * 13.37195 * 13 11 10 15 15 Si 1.86799 * 119.99932 * 193.36992 * 13 11 10 16 16 H 1.48502 * 109.46904 * 60.00336 * 15 13 11 17 17 H 1.48502 * 109.47210 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47339 * 300.00368 * 15 13 11 19 19 C 1.50701 * 109.47268 * 240.00169 * 2 1 3 20 20 C 1.39383 * 119.49849 * 279.72590 * 19 2 1 21 21 C 1.36098 * 120.98224 * 179.73265 * 20 19 2 22 22 C 1.40536 * 119.65108 * 0.55230 * 21 20 19 23 23 C 1.40545 * 121.27605 * 179.72289 * 22 21 20 24 24 C 1.36098 * 119.65076 * 180.02562 * 23 22 21 25 25 C 1.39371 * 120.98808 * 359.96496 * 24 23 22 26 26 C 1.36095 * 120.99081 * 0.02562 * 25 24 23 27 27 C 1.40537 * 119.65572 * 0.02562 * 26 25 24 28 28 C 1.36084 * 119.50573 * 99.99685 * 19 2 1 29 29 H 1.08997 * 109.47032 * 60.00268 * 1 2 3 30 30 H 1.08996 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47157 * 300.00234 * 1 2 3 32 32 H 1.08004 * 119.97018 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.70097 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.73068 * 180.02562 * 8 7 6 35 35 H 1.07996 * 120.03638 * 179.97438 * 9 8 7 36 36 H 0.97007 * 119.99858 * 179.97438 * 14 13 11 37 37 H 1.07999 * 119.50580 * 359.97438 * 20 19 2 38 38 H 1.07994 * 120.17036 * 180.28132 * 21 20 19 39 39 H 1.07996 * 120.17733 * 0.03558 * 23 22 21 40 40 H 1.08000 * 119.50129 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.50453 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.17249 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.17622 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.1314 0.0661 2.2969 6 6 1.7007 1.3816 2.3211 7 6 1.8308 2.1319 3.4757 8 6 2.3913 1.5782 4.6186 9 6 2.8229 0.2834 4.6220 10 6 2.7062 -0.4987 3.4578 11 6 3.1554 -1.8368 3.4511 12 1 3.4849 -2.2911 2.5284 13 6 3.1739 -2.5747 4.6400 14 7 2.5413 -2.1303 5.6958 15 14 4.1017 -4.1940 4.7198 16 1 5.5372 -3.9572 4.4222 17 1 3.9680 -4.7746 6.0801 18 1 3.5381 -5.1372 3.7209 19 6 2.0324 -0.7104 -1.2305 20 6 2.0680 -2.1036 -1.2522 21 6 2.5109 -2.7761 -2.3494 22 6 2.9503 -2.0579 -3.4746 23 6 3.4198 -2.7173 -4.6235 24 6 3.8380 -1.9889 -5.6944 25 6 3.8074 -0.5957 -5.6706 26 6 3.3591 0.0768 -4.5757 27 6 2.9201 -0.6412 -3.4501 28 6 2.4497 0.0181 -2.3015 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2628 1.8224 1.4377 33 1 1.4926 3.1575 3.4884 34 1 2.4858 2.1766 5.5127 35 1 3.2581 -0.1391 5.5156 36 1 2.5538 -2.6419 6.5198 37 1 1.7355 -2.6577 -0.3869 38 1 2.5286 -3.8559 -2.3537 39 1 3.4485 -3.7964 -4.6565 40 1 4.1987 -2.4981 -6.5759 41 1 4.1446 -0.0415 -6.5341 42 1 3.3416 1.1566 -4.5714 43 1 2.4209 1.0972 -2.2685 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230272948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:04 Heat of formation + Delta-G solvation = 20.310410 kcal Electronic energy + Delta-G solvation = -25208.034337 eV Core-core repulsion = 21761.585600 eV Total energy + Delta-G solvation = -3446.448737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.41773 -38.95297 -37.01748 -35.76028 -33.55805 -32.91967 -31.79426 -29.78107 -29.44190 -28.54778 -28.52702 -25.15455 -23.99416 -23.24075 -21.98646 -21.87296 -20.71099 -20.01566 -17.55896 -17.28663 -17.02700 -16.34086 -15.94732 -15.23138 -14.76332 -14.57217 -14.43117 -14.14350 -13.79850 -13.59290 -13.52974 -13.32390 -12.94268 -12.86966 -12.50442 -12.24751 -12.13859 -11.82742 -11.56983 -11.35601 -11.22509 -11.04574 -10.98697 -10.85566 -10.82664 -10.48563 -10.40614 -10.00823 -9.84788 -9.69868 -9.37516 -9.15249 -8.46467 -7.84847 -7.43582 -6.97922 -6.63428 -4.22615 0.56228 1.04910 2.08869 2.79173 2.97982 3.04104 3.10888 3.14730 3.23974 4.00009 4.08402 4.24089 4.62895 4.69315 4.79914 4.87451 4.98234 5.10974 5.19227 5.34012 5.39486 5.48065 5.52597 5.58766 5.69890 5.77617 5.86924 5.97430 6.04224 6.08964 6.18526 6.25900 6.31151 6.32348 6.42626 6.46334 6.49250 6.66609 6.74897 6.84617 6.97192 7.06655 7.14865 7.33078 7.39539 7.75376 7.80596 8.08438 8.24611 8.43658 8.74416 8.90022 9.10310 10.28535 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.003677 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.435780 B = 7612.892976 C = 9087.925831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 H 0.073 0.927 4 O -0.296 6.296 5 C 0.015 3.985 6 C -0.180 4.180 7 C -0.212 4.212 8 C -0.129 4.129 9 C -0.141 4.141 10 C 0.098 3.902 11 C -0.446 4.446 12 H 0.080 0.920 13 C 0.073 3.927 14 N -0.804 5.804 15 Si 0.909 3.091 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.062 4.062 20 C -0.080 4.080 21 C -0.116 4.116 22 C -0.051 4.051 23 C -0.105 4.105 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.104 4.104 27 C -0.051 4.051 28 C -0.105 4.105 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.279 0.721 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 0.720 -16.650 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.063 3.937 3 H 0.090 0.910 4 O -0.210 6.210 5 C -0.029 4.029 6 C -0.199 4.199 7 C -0.231 4.231 8 C -0.148 4.148 9 C -0.161 4.161 10 C 0.095 3.905 11 C -0.476 4.476 12 H 0.098 0.902 13 C -0.143 4.143 14 N -0.430 5.430 15 Si 0.733 3.267 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.191 1.191 19 C -0.062 4.062 20 C -0.098 4.098 21 C -0.134 4.134 22 C -0.051 4.051 23 C -0.123 4.123 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.122 4.122 27 C -0.051 4.051 28 C -0.123 4.123 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.199 0.437 -16.422 16.429 hybrid contribution 0.232 -0.446 0.119 0.517 sum 0.033 -0.009 -16.303 16.303 Atomic orbital electron populations 1.22293 0.95081 1.03077 1.02220 1.20945 0.93741 0.95498 0.83563 0.90963 1.86015 1.82247 1.36743 1.16042 1.19206 1.05013 0.90964 0.87701 1.20635 1.06821 0.94240 0.98240 1.20144 1.10443 0.98393 0.94135 1.20394 1.01825 0.96031 0.96512 1.20907 1.03809 0.92208 0.99143 1.17060 0.91099 0.93652 0.88646 1.19360 1.37275 0.96153 0.94835 0.90196 1.25860 0.93684 0.99743 0.95055 1.69810 1.32439 1.38302 1.02491 0.86358 0.80884 0.81453 0.77955 1.18955 1.20461 1.19061 1.19542 0.97976 0.94188 0.94463 1.20866 0.97108 0.93840 0.97992 1.21028 0.99875 0.99696 0.92763 1.18125 0.99543 0.92668 0.94795 1.21028 0.98812 0.99691 0.92799 1.20794 1.00633 0.94165 0.98578 1.20784 1.00627 0.94456 0.98382 1.21010 0.98781 0.99620 0.92753 1.18000 0.99885 0.92668 0.94537 1.20799 0.99297 0.99580 0.92609 0.92116 0.91685 0.91237 0.88567 0.89414 0.89383 0.85801 0.91014 0.84811 0.85535 0.85768 0.86308 0.86284 0.85750 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.18 37.16 0.34 -2.28 16 2 C 0.12 2.10 2.40 -27.88 -0.07 2.03 16 3 H 0.07 1.23 6.06 -51.93 -0.31 0.92 16 4 O -0.30 -6.62 8.39 -18.61 -0.16 -6.78 16 5 C 0.02 0.38 6.64 -38.33 -0.25 0.12 16 6 C -0.18 -4.03 8.29 -39.48 -0.33 -4.36 16 7 C -0.21 -4.74 10.04 -39.34 -0.39 -5.13 16 8 C -0.13 -3.05 9.97 -40.00 -0.40 -3.45 16 9 C -0.14 -3.69 8.61 -39.27 -0.34 -4.02 16 10 C 0.10 2.64 5.57 -106.68 -0.59 2.05 16 11 C -0.45 -12.07 8.70 -37.84 -0.33 -12.40 16 12 H 0.08 2.15 7.68 -52.49 -0.40 1.74 16 13 C 0.07 1.85 5.21 -17.33 -0.09 1.76 16 14 N -0.80 -21.01 10.90 55.55 0.61 -20.40 16 15 Si 0.91 19.18 29.58 -169.99 -5.03 14.15 16 16 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 C -0.06 -0.98 4.94 -104.97 -0.52 -1.50 16 20 C -0.08 -1.27 9.25 -39.92 -0.37 -1.64 16 21 C -0.12 -1.60 9.77 -39.48 -0.39 -1.98 16 22 C -0.05 -0.69 5.74 -106.83 -0.61 -1.31 16 23 C -0.11 -1.18 9.77 -39.48 -0.39 -1.57 16 24 C -0.12 -1.24 9.95 -39.93 -0.40 -1.63 16 25 C -0.12 -1.25 9.95 -39.93 -0.40 -1.64 16 26 C -0.10 -1.17 9.77 -39.49 -0.39 -1.56 16 27 C -0.05 -0.69 5.74 -106.83 -0.61 -1.30 16 28 C -0.10 -1.48 9.36 -39.49 -0.37 -1.85 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.14 7.04 -51.93 -0.37 0.78 16 32 H 0.10 1.86 5.48 -52.48 -0.29 1.57 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.12 3.32 6.22 -52.49 -0.33 3.00 16 36 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.13 2.22 7.73 -52.49 -0.41 1.81 16 38 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.13 1.51 8.00 -52.49 -0.42 1.09 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -29.10 358.24 -11.53 -40.63 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.46 Total: 8.66 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: -6.89 Total: -41.66 kcal Atomic # 7 Polarization: -21.01 SS G_CDS: 0.61 Total: -20.40 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.16 Total: -6.78 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.10 -11.53 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230272948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.944 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds