Wall clock time and date at job start Tue Mar 31 2020 12:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46882 * 2 1 4 4 O 1.42895 * 109.47046 * 119.99591 * 2 1 3 5 5 C 1.35638 * 117.00064 * 274.03868 * 4 2 1 6 6 C 1.38446 * 120.27086 * 5.38449 * 5 4 2 7 7 C 1.38305 * 120.05573 * 180.02562 * 6 5 4 8 8 C 1.38816 * 120.59034 * 359.97438 * 7 6 5 9 9 C 1.36487 * 120.54079 * 359.97438 * 8 7 6 10 10 C 1.40731 * 119.92896 * 0.27892 * 9 8 7 11 11 C 1.41148 * 120.29187 * 179.72276 * 10 9 8 12 12 H 1.07998 * 120.00002 * 207.54249 * 11 10 9 13 13 C 1.39940 * 119.99919 * 27.54127 * 11 10 9 14 14 N 1.30863 * 119.99892 * 13.37195 * 13 11 10 15 15 Si 1.86799 * 119.99932 * 193.36992 * 13 11 10 16 16 H 1.48502 * 109.46904 * 60.00336 * 15 13 11 17 17 H 1.48502 * 109.47210 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47339 * 300.00368 * 15 13 11 19 19 C 1.50701 * 109.47268 * 240.00169 * 2 1 3 20 20 C 1.39383 * 119.49849 * 279.72590 * 19 2 1 21 21 C 1.36098 * 120.98224 * 179.73265 * 20 19 2 22 22 C 1.40536 * 119.65108 * 0.55230 * 21 20 19 23 23 C 1.40545 * 121.27605 * 179.72289 * 22 21 20 24 24 C 1.36098 * 119.65076 * 180.02562 * 23 22 21 25 25 C 1.39371 * 120.98808 * 359.96496 * 24 23 22 26 26 C 1.36095 * 120.99081 * 0.02562 * 25 24 23 27 27 C 1.40537 * 119.65572 * 0.02562 * 26 25 24 28 28 C 1.36084 * 119.50573 * 99.99685 * 19 2 1 29 29 H 1.08997 * 109.47032 * 60.00268 * 1 2 3 30 30 H 1.08996 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47157 * 300.00234 * 1 2 3 32 32 H 1.08004 * 119.97018 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.70097 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.73068 * 180.02562 * 8 7 6 35 35 H 1.07996 * 120.03638 * 179.97438 * 9 8 7 36 36 H 0.97007 * 119.99858 * 179.97438 * 14 13 11 37 37 H 1.07999 * 119.50580 * 359.97438 * 20 19 2 38 38 H 1.07994 * 120.17036 * 180.28132 * 21 20 19 39 39 H 1.07996 * 120.17733 * 0.03558 * 23 22 21 40 40 H 1.08000 * 119.50129 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.50453 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.17249 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.17622 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.1314 0.0661 2.2969 6 6 1.7007 1.3816 2.3211 7 6 1.8308 2.1319 3.4757 8 6 2.3913 1.5782 4.6186 9 6 2.8229 0.2834 4.6220 10 6 2.7062 -0.4987 3.4578 11 6 3.1554 -1.8368 3.4511 12 1 3.4849 -2.2911 2.5284 13 6 3.1739 -2.5747 4.6400 14 7 2.5413 -2.1303 5.6958 15 14 4.1017 -4.1940 4.7198 16 1 5.5372 -3.9572 4.4222 17 1 3.9680 -4.7746 6.0801 18 1 3.5381 -5.1372 3.7209 19 6 2.0324 -0.7104 -1.2305 20 6 2.0680 -2.1036 -1.2522 21 6 2.5109 -2.7761 -2.3494 22 6 2.9503 -2.0579 -3.4746 23 6 3.4198 -2.7173 -4.6235 24 6 3.8380 -1.9889 -5.6944 25 6 3.8074 -0.5957 -5.6706 26 6 3.3591 0.0768 -4.5757 27 6 2.9201 -0.6412 -3.4501 28 6 2.4497 0.0181 -2.3015 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2628 1.8224 1.4377 33 1 1.4926 3.1575 3.4884 34 1 2.4858 2.1766 5.5127 35 1 3.2581 -0.1391 5.5156 36 1 2.5538 -2.6419 6.5198 37 1 1.7355 -2.6577 -0.3869 38 1 2.5286 -3.8559 -2.3537 39 1 3.4485 -3.7964 -4.6565 40 1 4.1987 -2.4981 -6.5759 41 1 4.1446 -0.0415 -6.5341 42 1 3.3416 1.1566 -4.5714 43 1 2.4209 1.0972 -2.2685 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230272948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:03 Heat of formation + Delta-G solvation = 8.799684 kcal Electronic energy + Delta-G solvation = -25208.533480 eV Core-core repulsion = 21761.585600 eV Total energy + Delta-G solvation = -3446.947880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47379 -40.52901 -38.46285 -37.11448 -35.46211 -33.98881 -32.97287 -31.48293 -30.58312 -30.34752 -29.62530 -27.06905 -25.19219 -24.24546 -23.42723 -22.89805 -22.45524 -21.52795 -19.38544 -18.54287 -18.17346 -17.75851 -17.06927 -16.91216 -16.03524 -15.99934 -15.87105 -15.62044 -15.16127 -14.87220 -14.64774 -14.45340 -14.25164 -14.23930 -14.00388 -13.75290 -13.44806 -13.11820 -12.99124 -12.97829 -12.78757 -12.69580 -12.22980 -12.19016 -12.11191 -11.86222 -11.66819 -11.59244 -11.48130 -11.15046 -11.05106 -10.88075 -9.47595 -9.34826 -8.84815 -8.80351 -8.52090 -6.22283 -0.39099 0.05560 0.95203 1.10232 1.13535 1.36161 1.47374 1.51092 2.03173 2.22904 2.69877 2.77884 3.18782 3.63099 3.70267 3.73142 3.97561 4.01036 4.06997 4.21497 4.27829 4.32239 4.38242 4.47274 4.48882 4.52966 4.58746 4.62873 4.78307 4.81184 4.90274 5.00839 5.09822 5.14102 5.22278 5.23132 5.31755 5.35215 5.45876 5.47002 5.57972 5.65953 5.67459 5.88985 5.91072 5.92524 6.11391 6.17285 6.33117 6.54388 6.83083 6.94768 7.26241 8.40628 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.003677 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.435780 B = 7612.892976 C = 9087.925831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 H 0.078 0.922 4 O -0.318 6.318 5 C 0.010 3.990 6 C -0.183 4.183 7 C -0.202 4.202 8 C -0.139 4.139 9 C -0.162 4.162 10 C 0.057 3.943 11 C -0.483 4.483 12 H 0.065 0.935 13 C 0.033 3.967 14 N -0.835 5.835 15 Si 0.977 3.023 16 H -0.262 1.262 17 H -0.264 1.264 18 H -0.264 1.264 19 C -0.085 4.085 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.069 4.069 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.114 4.114 27 C -0.069 4.069 28 C -0.100 4.100 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.286 0.714 37 H 0.110 0.890 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 1.661 -19.658 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 H 0.096 0.904 4 O -0.233 6.233 5 C -0.034 4.034 6 C -0.201 4.201 7 C -0.221 4.221 8 C -0.157 4.157 9 C -0.182 4.182 10 C 0.055 3.945 11 C -0.513 4.513 12 H 0.083 0.917 13 C -0.179 4.179 14 N -0.463 5.463 15 Si 0.798 3.202 16 H -0.187 1.187 17 H -0.189 1.189 18 H -0.189 1.189 19 C -0.085 4.085 20 C -0.126 4.126 21 C -0.131 4.131 22 C -0.069 4.069 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.069 4.069 28 C -0.118 4.118 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.203 1.395 -19.440 19.491 hybrid contribution 0.091 -0.619 0.795 1.012 sum 0.294 0.776 -18.644 18.663 Atomic orbital electron populations 1.22236 0.93745 1.02826 1.03110 1.21215 0.94836 0.95583 0.82375 0.90381 1.85991 1.82488 1.38006 1.16829 1.19383 1.04225 0.91878 0.87954 1.20994 1.06146 0.93367 0.99617 1.20620 1.08290 0.99911 0.93261 1.20687 1.01561 0.95317 0.98177 1.20882 1.05203 0.93513 0.98600 1.17444 0.92592 0.94254 0.90230 1.19448 1.39642 0.97069 0.95150 0.91707 1.26621 0.94022 1.03044 0.94253 1.69862 1.33431 1.39900 1.03068 0.85338 0.79307 0.77065 0.78496 1.18686 1.18860 1.18863 1.19454 1.00288 0.94248 0.94550 1.20761 0.99457 0.94195 0.98224 1.21228 0.98893 1.00620 0.92378 1.18404 0.99995 0.93101 0.95427 1.21303 0.98942 1.00949 0.92395 1.21246 0.98825 0.94457 0.98995 1.21239 0.98853 0.94786 0.98804 1.21296 0.98785 1.00832 0.92310 1.18288 1.00349 0.93043 0.95233 1.21016 0.98151 1.00479 0.92176 0.88991 0.92599 0.92307 0.85372 0.85714 0.86954 0.87551 0.90393 0.87202 0.83881 0.83893 0.83192 0.83121 0.83665 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 9.18 71.98 0.66 -4.36 16 2 C 0.12 4.13 2.40 29.85 0.07 4.20 16 3 H 0.08 2.61 6.06 -2.38 -0.01 2.60 16 4 O -0.32 -14.95 8.39 -89.52 -0.75 -15.70 16 5 C 0.01 0.52 6.64 23.08 0.15 0.67 16 6 C -0.18 -8.02 8.29 22.34 0.19 -7.84 16 7 C -0.20 -8.69 10.04 22.42 0.23 -8.47 16 8 C -0.14 -6.55 9.97 22.00 0.22 -6.33 16 9 C -0.16 -8.82 8.61 22.47 0.19 -8.63 16 10 C 0.06 3.24 5.57 -21.20 -0.12 3.12 16 11 C -0.48 -27.79 8.70 23.40 0.20 -27.58 16 12 H 0.06 3.76 7.68 -2.91 -0.02 3.74 16 13 C 0.03 1.78 5.21 85.25 0.44 2.22 16 14 N -0.83 -45.58 10.90 21.83 0.24 -45.34 16 15 Si 0.98 40.83 29.58 68.60 2.03 42.86 16 16 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 17 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 C -0.09 -2.79 4.94 -20.09 -0.10 -2.89 16 20 C -0.11 -3.63 9.25 22.05 0.20 -3.42 16 21 C -0.11 -3.20 9.77 22.33 0.22 -2.98 16 22 C -0.07 -1.81 5.74 -21.30 -0.12 -1.93 16 23 C -0.12 -2.37 9.77 22.33 0.22 -2.15 16 24 C -0.12 -1.90 9.95 22.04 0.22 -1.68 16 25 C -0.12 -1.91 9.95 22.04 0.22 -1.69 16 26 C -0.11 -2.24 9.77 22.33 0.22 -2.03 16 27 C -0.07 -1.78 5.74 -21.30 -0.12 -1.90 16 28 C -0.10 -2.76 9.36 22.33 0.21 -2.55 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.92 7.04 -2.39 -0.02 1.90 16 32 H 0.13 4.71 5.48 -2.91 -0.02 4.70 16 33 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.11 6.03 6.22 -2.91 -0.02 6.01 16 36 H 0.29 14.15 8.30 -92.70 -0.77 13.38 16 37 H 0.11 4.07 7.73 -2.91 -0.02 4.04 16 38 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 39 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 43 H 0.15 3.24 8.00 -2.91 -0.02 3.21 16 Total: -1.00 -66.95 358.24 5.93 -61.02 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 1.02 Total: 33.38 kcal Atomic # 6 Polarization: -79.62 SS G_CDS: 3.40 Total: -76.21 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.24 Total: -45.34 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.75 Total: -15.70 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -66.95 5.93 -61.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230272948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.816 kcal (2) G-P(sol) polarization free energy of solvation -66.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds