Wall clock time and date at job start Tue Mar 31 2020 13:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07998 * 119.99874 * 94.58245 * 9 7 6 11 11 C 1.37874 * 120.00013 * 274.58919 * 9 7 6 12 12 N 1.31516 * 120.00188 * 6.45635 * 11 9 7 13 13 Si 1.86802 * 120.00134 * 186.46255 * 11 9 7 14 14 H 1.48501 * 109.47195 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.46739 * 299.99806 * 13 11 9 16 16 H 1.48495 * 109.46915 * 59.99420 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35929 * 117.00102 * 149.99797 * 17 7 6 19 19 N 1.30519 * 126.15933 * 0.02562 * 18 17 7 20 20 N 1.39867 * 110.05828 * 180.02562 * 19 18 17 21 21 C 1.46497 * 125.41755 * 179.97438 * 20 19 18 22 22 C 1.37038 * 109.16804 * 0.02562 * 20 19 18 23 23 C 1.39311 * 133.80012 * 179.97438 * 22 20 19 24 24 C 1.36597 * 119.84678 * 180.02562 * 23 22 20 25 25 C 1.38959 * 120.80510 * 359.97438 * 24 23 22 26 26 C 1.36496 * 120.62336 * 359.97438 * 25 24 23 27 27 C 1.39853 * 119.64126 * 359.74407 * 26 25 24 28 28 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 29 29 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 30 30 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 33 33 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 34 34 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 35 35 H 0.97008 * 120.00051 * 355.08911 * 12 11 9 36 36 H 1.08997 * 109.46721 * 90.02364 * 21 20 19 37 37 H 1.08993 * 109.47675 * 210.02380 * 21 20 19 38 38 H 1.09005 * 109.47131 * 330.03251 * 21 20 19 39 39 H 1.07994 * 120.07463 * 359.97438 * 23 22 20 40 40 H 1.07995 * 119.59355 * 179.97438 * 24 23 22 41 41 H 1.07996 * 119.68922 * 180.02562 * 25 24 23 42 42 H 1.07991 * 120.18270 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3044 4.8006 0.7456 11 6 6.1933 4.8001 -1.3861 12 7 5.7369 4.1771 -2.4506 13 14 7.0708 6.4391 -1.5677 14 1 7.1224 6.8167 -3.0030 15 1 6.3352 7.4812 -0.8073 16 1 8.4528 6.3221 -1.0371 17 8 5.8952 2.2742 1.2256 18 6 7.0543 1.5652 1.1855 19 7 7.7994 1.3665 0.1325 20 7 8.9124 0.5904 0.4720 21 6 9.9664 0.1673 -0.4533 22 6 8.8595 0.2879 1.8075 23 6 9.6827 -0.4389 2.6648 24 6 9.3494 -0.5637 3.9836 25 6 8.1960 0.0270 4.4851 26 6 7.3714 0.7457 3.6686 27 6 7.6941 0.8927 2.3158 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5852 3.4690 0.8905 34 1 3.5844 3.4701 -0.8894 35 1 5.3451 3.2938 -2.3650 36 1 10.7583 0.9161 -0.4688 37 1 10.3761 -0.7879 -0.1251 38 1 9.5491 0.0590 -1.4545 39 1 10.5817 -0.9032 2.2874 40 1 9.9903 -1.1284 4.6445 41 1 7.9500 -0.0829 5.5310 42 1 6.4769 1.2021 4.0660 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230625759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:15 Heat of formation + Delta-G solvation = -38.259095 kcal Electronic energy + Delta-G solvation = -26864.519618 eV Core-core repulsion = 23004.681853 eV Total energy + Delta-G solvation = -3859.837764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78599 -39.94014 -37.81759 -36.66419 -36.00434 -33.72089 -32.33104 -31.68364 -30.18193 -30.08228 -29.40060 -26.02849 -25.49691 -23.40175 -22.82137 -21.95982 -21.52882 -20.46528 -19.72260 -17.75036 -17.33178 -16.86457 -16.33861 -16.22972 -15.62339 -15.42623 -15.17764 -14.89715 -14.02765 -13.94589 -13.86584 -13.76318 -13.70388 -13.20220 -12.90303 -12.75848 -12.49262 -12.28956 -12.20998 -11.86032 -11.60504 -11.46436 -11.37196 -11.28472 -10.89093 -10.81990 -10.68406 -10.39791 -10.24189 -10.16291 -9.86463 -9.66881 -9.32256 -8.64682 -8.50471 -8.23394 -7.15111 -6.57945 -4.36073 1.33630 1.81977 2.82454 2.84418 3.14372 3.26169 3.36265 3.41324 3.57890 3.94323 4.12183 4.40360 4.84279 4.90319 5.01685 5.05971 5.15285 5.16589 5.27968 5.32018 5.38269 5.47784 5.59057 5.65185 5.70874 5.75370 5.81399 5.83229 5.99418 6.04137 6.10347 6.12167 6.14838 6.42038 6.62297 6.75072 6.76729 6.87353 7.01243 7.11356 7.48811 7.74071 8.05691 8.27343 8.35229 8.55656 8.60145 9.39061 10.77925 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007984 B = 0.005751 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.003348 B = 4867.145307 C = 7319.557906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.455 3.545 5 O -0.506 6.506 6 C -0.103 4.103 7 C 0.212 3.788 8 H 0.057 0.943 9 C -0.614 4.614 10 H 0.063 0.937 11 C 0.033 3.967 12 N -0.894 5.894 13 Si 1.072 2.928 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.286 1.286 17 O -0.291 6.291 18 C 0.322 3.678 19 N -0.292 5.292 20 N -0.408 5.408 21 C 0.120 3.880 22 C 0.145 3.855 23 C -0.155 4.155 24 C -0.069 4.069 25 C -0.183 4.183 26 C -0.021 4.021 27 C -0.175 4.175 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.270 0.730 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -9.255 8.085 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.299 3.701 5 O -0.393 6.393 6 C -0.141 4.141 7 C 0.158 3.842 8 H 0.075 0.925 9 C -0.651 4.651 10 H 0.081 0.919 11 C -0.173 4.173 12 N -0.528 5.528 13 Si 0.899 3.101 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.212 1.212 17 O -0.193 6.193 18 C 0.107 3.893 19 N -0.125 5.125 20 N -0.197 5.197 21 C -0.022 4.022 22 C 0.028 3.972 23 C -0.177 4.177 24 C -0.090 4.090 25 C -0.203 4.203 26 C -0.041 4.041 27 C -0.184 4.184 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.252 -8.114 5.796 10.050 hybrid contribution -0.483 -1.488 1.627 2.257 sum 0.769 -9.602 7.423 12.161 Atomic orbital electron populations 1.21779 0.93112 1.02451 1.03365 1.22892 0.94968 0.81519 1.02167 1.86566 1.25845 1.31317 1.84661 1.24709 0.79720 0.94056 0.71645 1.90631 1.60199 1.43367 1.45105 1.22127 0.97394 0.88814 1.05788 1.20080 0.87633 0.94618 0.81911 0.92533 1.22160 1.46652 1.00333 0.95959 0.91910 1.25911 0.94785 1.05036 0.91578 1.70839 1.35947 1.14437 1.31591 0.83492 0.76240 0.74032 0.76297 1.20511 1.21040 1.21226 1.86101 1.31922 1.62961 1.38311 1.21385 0.87641 0.90759 0.89486 1.77106 0.97852 1.16102 1.21417 1.47728 1.20823 1.46325 1.04868 1.21580 0.87780 0.99330 0.93525 1.18804 0.95590 0.97224 0.85544 1.19699 1.00597 1.04343 0.93109 1.20598 0.96409 0.97784 0.94214 1.20506 0.96789 1.03222 0.99736 1.20369 0.98224 0.94834 0.90710 1.19293 0.97498 1.07187 0.94386 0.91634 0.91577 0.90715 0.91712 0.91709 0.88022 0.86433 0.91887 0.91724 0.90478 0.89673 0.86124 0.85910 0.86087 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 37.16 0.38 -1.23 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.72 10.22 -39.23 -0.40 -7.12 16 4 C 0.46 9.79 7.84 36.01 0.28 10.07 16 5 O -0.51 -12.17 15.18 -23.93 -0.36 -12.54 16 6 C -0.10 -2.31 5.38 -27.88 -0.15 -2.46 16 7 C 0.21 5.50 1.17 -27.88 -0.03 5.47 16 8 H 0.06 1.63 5.91 -51.93 -0.31 1.32 16 9 C -0.61 -16.91 8.64 -34.44 -0.30 -17.21 16 10 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 11 C 0.03 0.92 5.45 -17.82 -0.10 0.83 16 12 N -0.89 -25.79 13.63 55.43 0.76 -25.04 16 13 Si 1.07 24.65 29.91 -169.99 -5.08 19.56 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 O -0.29 -7.38 9.11 -33.44 -0.30 -7.69 16 18 C 0.32 7.87 8.09 -14.89 -0.12 7.75 16 19 N -0.29 -7.17 11.34 31.79 0.36 -6.81 16 20 N -0.41 -8.08 4.05 -65.47 -0.26 -8.34 16 21 C 0.12 1.70 11.39 59.85 0.68 2.38 16 22 C 0.15 2.70 6.87 -84.17 -0.58 2.12 16 23 C -0.16 -2.22 9.96 -39.78 -0.40 -2.62 16 24 C -0.07 -0.88 9.96 -39.91 -0.40 -1.28 16 25 C -0.18 -2.50 9.97 -39.94 -0.40 -2.90 16 26 C -0.02 -0.36 10.06 -39.61 -0.40 -0.76 16 27 C -0.17 -3.61 6.37 -105.10 -0.67 -4.28 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 33 H 0.10 2.10 8.14 -51.93 -0.42 1.67 16 34 H 0.12 2.66 7.84 -51.93 -0.41 2.25 16 35 H 0.27 7.85 6.40 -40.82 -0.26 7.59 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -34.27 365.85 -7.43 -41.70 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.68 Total: 3.79 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.96 Total: -3.02 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.85 Total: -40.20 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.07 Total: -27.34 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.27 -7.43 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230625759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.439 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds