Wall clock time and date at job start Tue Mar 31 2020 13:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07998 * 119.99874 * 94.58245 * 9 7 6 11 11 C 1.37874 * 120.00013 * 274.58919 * 9 7 6 12 12 N 1.31516 * 120.00188 * 6.45635 * 11 9 7 13 13 Si 1.86802 * 120.00134 * 186.46255 * 11 9 7 14 14 H 1.48501 * 109.47195 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.46739 * 299.99806 * 13 11 9 16 16 H 1.48495 * 109.46915 * 59.99420 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35929 * 117.00102 * 149.99797 * 17 7 6 19 19 N 1.30519 * 126.15933 * 0.02562 * 18 17 7 20 20 N 1.39867 * 110.05828 * 180.02562 * 19 18 17 21 21 C 1.46497 * 125.41755 * 179.97438 * 20 19 18 22 22 C 1.37038 * 109.16804 * 0.02562 * 20 19 18 23 23 C 1.39311 * 133.80012 * 179.97438 * 22 20 19 24 24 C 1.36597 * 119.84678 * 180.02562 * 23 22 20 25 25 C 1.38959 * 120.80510 * 359.97438 * 24 23 22 26 26 C 1.36496 * 120.62336 * 359.97438 * 25 24 23 27 27 C 1.39853 * 119.64126 * 359.74407 * 26 25 24 28 28 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 29 29 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 30 30 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 33 33 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 34 34 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 35 35 H 0.97008 * 120.00051 * 355.08911 * 12 11 9 36 36 H 1.08997 * 109.46721 * 90.02364 * 21 20 19 37 37 H 1.08993 * 109.47675 * 210.02380 * 21 20 19 38 38 H 1.09005 * 109.47131 * 330.03251 * 21 20 19 39 39 H 1.07994 * 120.07463 * 359.97438 * 23 22 20 40 40 H 1.07995 * 119.59355 * 179.97438 * 24 23 22 41 41 H 1.07996 * 119.68922 * 180.02562 * 25 24 23 42 42 H 1.07991 * 120.18270 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3044 4.8006 0.7456 11 6 6.1933 4.8001 -1.3861 12 7 5.7369 4.1771 -2.4506 13 14 7.0708 6.4391 -1.5677 14 1 7.1224 6.8167 -3.0030 15 1 6.3352 7.4812 -0.8073 16 1 8.4528 6.3221 -1.0371 17 8 5.8952 2.2742 1.2256 18 6 7.0543 1.5652 1.1855 19 7 7.7994 1.3665 0.1325 20 7 8.9124 0.5904 0.4720 21 6 9.9664 0.1673 -0.4533 22 6 8.8595 0.2879 1.8075 23 6 9.6827 -0.4389 2.6648 24 6 9.3494 -0.5637 3.9836 25 6 8.1960 0.0270 4.4851 26 6 7.3714 0.7457 3.6686 27 6 7.6941 0.8927 2.3158 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5852 3.4690 0.8905 34 1 3.5844 3.4701 -0.8894 35 1 5.3451 3.2938 -2.3650 36 1 10.7583 0.9161 -0.4688 37 1 10.3761 -0.7879 -0.1251 38 1 9.5491 0.0590 -1.4545 39 1 10.5817 -0.9032 2.2874 40 1 9.9903 -1.1284 4.6445 41 1 7.9500 -0.0829 5.5310 42 1 6.4769 1.2021 4.0660 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230625759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:14 Heat of formation + Delta-G solvation = -60.615014 kcal Electronic energy + Delta-G solvation = -26865.489043 eV Core-core repulsion = 23004.681853 eV Total energy + Delta-G solvation = -3860.807190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23577 -41.62238 -39.55254 -37.99704 -37.63853 -35.70424 -33.85181 -32.97430 -31.89341 -31.29219 -30.75398 -27.89691 -26.95298 -25.05103 -24.11224 -23.44014 -22.86449 -22.06134 -21.42195 -19.59541 -18.91870 -18.49519 -17.92070 -17.73119 -17.26637 -16.94725 -16.68857 -16.08728 -15.74561 -15.66998 -15.39002 -15.24084 -14.92290 -14.63647 -14.44307 -14.04202 -13.89864 -13.62097 -13.45880 -13.43443 -13.14939 -12.89380 -12.78177 -12.72148 -12.57702 -12.27033 -12.18660 -11.96822 -11.93650 -11.64836 -11.61611 -11.40687 -10.98841 -10.65925 -10.32886 -9.65361 -8.82415 -8.54112 -6.57896 0.06159 0.59517 1.08697 1.43203 1.48641 1.52940 1.64970 1.65825 1.76875 2.29029 2.48902 2.87382 3.04687 3.54899 3.63277 3.73398 3.90873 4.01393 4.04341 4.14560 4.18861 4.24285 4.26552 4.37425 4.41096 4.48572 4.50842 4.61541 4.64374 4.76943 4.84602 4.86088 4.97664 5.01759 5.08087 5.24965 5.34988 5.49507 5.60572 5.65121 5.90571 5.96696 6.24008 6.33199 6.50172 6.66863 6.80581 7.25806 8.55920 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007984 B = 0.005751 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.003348 B = 4867.145307 C = 7319.557906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.361 6.361 4 C 0.464 3.536 5 O -0.536 6.536 6 C -0.098 4.098 7 C 0.221 3.779 8 H 0.018 0.982 9 C -0.624 4.624 10 H 0.051 0.949 11 C -0.009 4.009 12 N -0.913 5.913 13 Si 1.116 2.884 14 H -0.276 1.276 15 H -0.259 1.259 16 H -0.283 1.283 17 O -0.304 6.304 18 C 0.284 3.716 19 N -0.343 5.343 20 N -0.414 5.414 21 C 0.110 3.890 22 C 0.130 3.870 23 C -0.150 4.150 24 C -0.054 4.054 25 C -0.162 4.162 26 C -0.049 4.049 27 C -0.214 4.214 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.256 0.744 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -10.688 10.527 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.278 6.278 4 C 0.308 3.692 5 O -0.426 6.426 6 C -0.136 4.136 7 C 0.165 3.835 8 H 0.036 0.964 9 C -0.661 4.661 10 H 0.069 0.931 11 C -0.209 4.209 12 N -0.548 5.548 13 Si 0.937 3.063 14 H -0.201 1.201 15 H -0.183 1.183 16 H -0.209 1.209 17 O -0.207 6.207 18 C 0.070 3.930 19 N -0.176 5.176 20 N -0.206 5.206 21 C -0.030 4.030 22 C 0.014 3.986 23 C -0.172 4.172 24 C -0.074 4.074 25 C -0.182 4.182 26 C -0.069 4.069 27 C -0.222 4.222 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.177 0.823 40 H 0.193 0.807 41 H 0.177 0.823 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.413 -9.567 8.257 12.865 hybrid contribution -0.777 -1.254 1.008 1.786 sum 1.635 -10.821 9.264 14.338 Atomic orbital electron populations 1.21813 0.89410 1.04628 1.03883 1.23339 0.97770 0.79387 1.02077 1.86536 1.23557 1.33862 1.83855 1.24307 0.80703 0.93105 0.71045 1.90620 1.61224 1.44092 1.46639 1.21850 0.95514 0.89919 1.06271 1.19805 0.89373 0.93036 0.81238 0.96383 1.22335 1.47019 1.01010 0.95727 0.93054 1.27271 0.94599 1.07879 0.91198 1.70946 1.37530 1.14174 1.32153 0.82959 0.75537 0.71103 0.76750 1.20113 1.18349 1.20910 1.86024 1.33258 1.63790 1.37613 1.21881 0.87613 0.92031 0.91509 1.76869 0.99906 1.17722 1.23067 1.48017 1.20301 1.45869 1.06401 1.21973 0.86724 1.01728 0.92596 1.19328 0.95924 0.98054 0.85260 1.20252 1.00898 1.02912 0.93156 1.21243 0.95932 0.96148 0.94075 1.21020 0.95822 1.00373 1.00974 1.20578 0.99606 0.96852 0.89898 1.19622 0.98648 1.08678 0.95264 0.90898 0.91262 0.87641 0.92132 0.91646 0.86329 0.86947 0.93388 0.90477 0.86170 0.90672 0.82273 0.80703 0.82252 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 10.29 71.98 0.74 -2.03 16 2 C 0.05 1.40 6.19 71.98 0.45 1.85 16 3 O -0.36 -13.52 10.22 -51.33 -0.52 -14.04 16 4 C 0.46 20.99 7.84 71.24 0.56 21.55 16 5 O -0.54 -27.42 15.18 26.93 0.41 -27.01 16 6 C -0.10 -4.65 5.38 29.85 0.16 -4.49 16 7 C 0.22 12.27 1.17 29.85 0.03 12.31 16 8 H 0.02 1.15 5.91 -2.38 -0.01 1.13 16 9 C -0.62 -36.27 8.64 25.60 0.22 -36.05 16 10 H 0.05 3.03 7.82 -2.91 -0.02 3.00 16 11 C -0.01 -0.49 5.45 84.65 0.46 -0.03 16 12 N -0.91 -55.18 13.63 21.45 0.29 -54.89 16 13 Si 1.12 50.64 29.91 68.60 2.05 52.69 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 O -0.30 -16.61 9.11 -79.44 -0.72 -17.34 16 18 C 0.28 14.86 8.09 86.98 0.70 15.56 16 19 N -0.34 -18.03 11.34 -166.93 -1.89 -19.92 16 20 N -0.41 -16.82 4.05 -361.05 -1.46 -18.28 16 21 C 0.11 3.07 11.39 127.77 1.46 4.53 16 22 C 0.13 4.78 6.87 39.22 0.27 5.05 16 23 C -0.15 -3.72 9.96 22.14 0.22 -3.50 16 24 C -0.05 -1.08 9.96 22.06 0.22 -0.86 16 25 C -0.16 -3.85 9.97 22.04 0.22 -3.63 16 26 C -0.05 -1.66 10.06 22.25 0.22 -1.43 16 27 C -0.21 -9.13 6.37 -20.17 -0.13 -9.25 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 32 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 33 H 0.12 5.13 8.14 -2.39 -0.02 5.11 16 34 H 0.11 5.41 7.84 -2.39 -0.02 5.39 16 35 H 0.26 15.91 6.40 -92.70 -0.59 15.32 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.12 2.25 8.13 -2.39 -0.02 2.23 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 40 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 42 H 0.12 4.00 8.06 -2.92 -0.02 3.98 16 Total: -1.00 -82.72 365.85 5.16 -77.56 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.20 Total: 21.67 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.81 Total: -0.43 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -3.06 Total: -93.10 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -0.84 Total: -58.39 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -82.72 5.16 -77.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230625759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.943 kcal (2) G-P(sol) polarization free energy of solvation -82.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds