Wall clock time and date at job start Tue Mar 31 2020 13:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47107 * 2 1 4 4 C 1.34230 * 116.99799 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00489 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99549 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46902 * 179.97438 * 6 4 3 8 8 H 1.08993 * 109.47531 * 54.99781 * 7 6 4 9 9 C 1.50702 * 109.47024 * 174.99750 * 7 6 4 10 10 H 1.08001 * 119.99952 * 239.99776 * 9 7 6 11 11 C 1.37874 * 120.00050 * 59.99752 * 9 7 6 12 12 N 1.31518 * 120.00209 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00028 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47153 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46874 * 120.00272 * 13 11 9 16 16 H 1.48496 * 109.47395 * 240.00233 * 13 11 9 17 17 O 1.42900 * 109.46826 * 294.99530 * 7 6 4 18 18 C 1.35983 * 116.99789 * 155.82405 * 17 7 6 19 19 C 1.37915 * 119.81809 * 5.14753 * 18 17 7 20 20 C 1.39941 * 119.48193 * 179.79613 * 19 18 17 21 21 C 1.45937 * 133.94934 * 180.18257 * 20 19 18 22 22 N 1.30243 * 107.81608 * 180.25543 * 21 20 19 23 23 N 1.39865 * 110.08740 * 359.97438 * 22 21 20 24 24 H 0.97004 * 125.47026 * 179.97438 * 23 22 21 25 25 C 1.37220 * 109.06230 * 0.02562 * 23 22 21 26 26 C 1.39229 * 133.70145 * 180.02562 * 25 23 22 27 27 C 1.50697 * 119.96684 * 359.97438 * 26 25 23 28 28 C 1.36556 * 120.06711 * 180.02562 * 26 25 23 29 29 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46913 * 299.99821 * 1 2 3 31 31 H 1.08996 * 109.46827 * 60.00356 * 1 2 3 32 32 H 1.09001 * 109.47413 * 239.99612 * 2 1 3 33 33 H 1.09001 * 109.47226 * 119.99868 * 2 1 3 34 34 H 1.09000 * 109.47751 * 59.99670 * 6 4 3 35 35 H 1.08998 * 109.47481 * 299.99155 * 6 4 3 36 36 H 0.96992 * 120.00142 * 179.97438 * 12 11 9 37 37 H 1.07999 * 120.25725 * 0.02671 * 19 18 17 38 38 H 1.08001 * 126.08829 * 0.23107 * 21 20 19 39 39 H 1.09004 * 109.46817 * 270.01545 * 27 26 25 40 40 H 1.09003 * 109.47372 * 30.01585 * 27 26 25 41 41 H 1.09003 * 109.47137 * 150.01759 * 27 26 25 42 42 H 1.08004 * 119.61423 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7806 2.2501 -0.8421 9 6 6.0243 4.2446 -0.1235 10 1 6.6591 4.4933 -0.9611 11 6 5.7407 5.1962 0.8330 12 7 4.9681 4.8933 1.8533 13 14 6.4549 6.9156 0.6805 14 1 7.2852 6.9995 -0.5478 15 1 5.3504 7.9050 0.5993 16 1 7.2962 7.2094 1.8683 17 8 5.8946 2.2634 1.2207 18 6 7.1125 1.6588 1.2043 19 6 7.8995 1.7326 0.0742 20 6 9.1535 1.1115 0.0665 21 6 10.2190 0.9929 -0.9236 22 7 11.1783 0.2886 -0.3944 23 7 10.8359 -0.0869 0.9087 24 1 11.3882 -0.6156 1.5056 25 6 9.5928 0.4118 1.2067 26 6 8.7759 0.3494 2.3325 27 6 9.2380 -0.3969 3.5574 28 6 7.5559 0.9630 2.3274 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.5852 3.4691 0.8904 35 1 3.5845 3.4701 -0.8895 36 1 4.7689 5.5626 2.5264 37 1 7.5524 2.2686 -0.7967 38 1 10.2130 1.4139 -1.9182 39 1 8.9178 -1.4368 3.4916 40 1 10.3254 -0.3548 3.6199 41 1 8.8049 0.0610 4.4468 42 1 6.9280 0.9096 3.2045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230903265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:32 Heat of formation + Delta-G solvation = -47.441913 kcal Electronic energy + Delta-G solvation = -26826.953570 eV Core-core repulsion = 22966.717609 eV Total energy + Delta-G solvation = -3860.235961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72887 -39.78676 -38.20909 -36.21690 -35.58328 -33.26671 -32.30038 -31.58660 -30.36327 -30.08010 -28.25265 -26.57277 -25.96535 -23.33492 -22.48150 -21.83700 -20.99794 -20.66311 -19.74142 -17.40524 -17.17170 -16.94249 -16.16900 -16.00670 -15.57232 -15.33299 -14.64655 -14.54761 -14.48308 -13.87616 -13.57154 -13.46317 -13.22104 -13.02097 -12.79719 -12.73533 -12.47233 -12.14164 -11.88608 -11.67520 -11.64073 -11.33761 -11.21146 -11.04977 -10.88059 -10.77684 -10.60955 -10.32684 -10.21708 -10.13355 -9.72409 -9.60997 -9.33350 -8.94289 -8.75154 -7.93528 -6.67195 -6.22272 -4.42949 1.44610 2.32035 2.94407 3.02537 3.13595 3.17912 3.28430 3.31367 3.34075 4.25194 4.47911 4.52658 5.06090 5.08696 5.11323 5.14123 5.15894 5.22595 5.38721 5.48075 5.49349 5.70382 5.75902 5.89685 5.91421 5.93385 5.99012 6.07294 6.16951 6.30289 6.33200 6.48045 6.59809 6.70619 6.90905 6.97599 7.01379 7.07606 7.28743 7.51246 7.67288 7.74454 7.88868 7.99739 8.49372 8.56538 8.93321 9.35108 10.78206 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.005125 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.438778 B = 5461.742995 C = 7421.802542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.513 6.513 6 C -0.101 4.101 7 C 0.225 3.775 8 H 0.032 0.968 9 C -0.559 4.559 10 H 0.069 0.931 11 C 0.086 3.914 12 N -0.858 5.858 13 Si 0.894 3.106 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.281 1.281 17 O -0.288 6.288 18 C 0.155 3.845 19 C -0.149 4.149 20 C -0.135 4.135 21 C 0.065 3.935 22 N -0.262 5.262 23 N -0.518 5.518 24 H 0.431 0.569 25 C 0.076 3.924 26 C -0.087 4.087 27 C -0.104 4.104 28 C -0.105 4.105 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.266 0.734 37 H 0.138 0.862 38 H 0.190 0.810 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 -7.846 -0.583 7.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.300 3.700 5 O -0.401 6.401 6 C -0.139 4.139 7 C 0.171 3.829 8 H 0.050 0.950 9 C -0.596 4.596 10 H 0.087 0.913 11 C -0.121 4.121 12 N -0.494 5.494 13 Si 0.721 3.279 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.207 1.207 17 O -0.200 6.200 18 C 0.105 3.895 19 C -0.170 4.170 20 C -0.142 4.142 21 C -0.133 4.133 22 N -0.077 5.077 23 N -0.236 5.236 24 H 0.274 0.726 25 C -0.037 4.037 26 C -0.091 4.091 27 C -0.161 4.161 28 C -0.126 4.126 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.207 0.793 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.313 -8.559 -0.449 8.576 hybrid contribution -0.069 0.951 0.287 0.996 sum 0.245 -7.608 -0.162 7.613 Atomic orbital electron populations 1.21778 0.93341 1.02303 1.03316 1.22848 0.94816 0.81827 1.02023 1.86578 1.26216 1.30942 1.84772 1.24910 0.79466 0.94345 0.71237 1.90601 1.60160 1.43603 1.45724 1.21835 0.96720 0.88103 1.07202 1.19766 0.88556 0.92456 0.82141 0.94963 1.21454 1.32751 0.94985 1.10363 0.91314 1.25018 0.93740 0.98911 0.94413 1.69867 1.34412 1.34304 1.10771 0.86507 0.79175 0.83718 0.78519 1.19422 1.20652 1.20722 1.86231 1.28635 1.66414 1.38746 1.18595 0.87193 0.91229 0.92455 1.20699 0.93001 1.03486 0.99841 1.19646 0.96660 1.04236 0.93657 1.24944 0.90474 0.98258 0.99643 1.76355 1.23408 1.15424 0.92488 1.45631 1.15129 1.50837 1.12005 0.72622 1.18365 0.88075 1.00899 0.96337 1.18184 0.93987 1.03264 0.93629 1.20631 1.00390 0.99574 0.95464 1.19918 0.95331 0.99072 0.98256 0.90873 0.91606 0.91719 0.91904 0.91750 0.84234 0.88001 0.92365 0.84426 0.79278 0.91663 0.92699 0.91203 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.64 10.22 -39.26 -0.40 -7.04 16 4 C 0.46 9.46 7.84 36.00 0.28 9.74 16 5 O -0.51 -11.70 15.17 -24.05 -0.36 -12.06 16 6 C -0.10 -2.19 5.22 -27.88 -0.15 -2.33 16 7 C 0.23 5.31 1.35 -27.88 -0.04 5.27 16 8 H 0.03 0.75 6.15 -51.93 -0.32 0.44 16 9 C -0.56 -13.85 7.93 -34.44 -0.27 -14.12 16 10 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.09 2.17 5.24 -17.82 -0.09 2.07 16 12 N -0.86 -22.18 10.93 55.43 0.61 -21.57 16 13 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 O -0.29 -7.12 8.43 -34.14 -0.29 -7.41 16 18 C 0.15 3.49 6.59 -39.28 -0.26 3.23 16 19 C -0.15 -3.16 8.74 -39.06 -0.34 -3.51 16 20 C -0.13 -2.60 6.36 -105.21 -0.67 -3.27 16 21 C 0.06 1.07 12.28 -15.14 -0.19 0.88 16 22 N -0.26 -4.36 12.55 31.87 0.40 -3.96 16 23 N -0.52 -8.14 7.38 32.38 0.24 -7.90 16 24 H 0.43 5.29 8.89 -182.77 -1.63 3.67 16 25 C 0.08 1.37 6.99 -84.12 -0.59 0.78 16 26 C -0.09 -1.50 5.86 -104.86 -0.61 -2.12 16 27 C -0.10 -1.33 10.01 36.00 0.36 -0.97 16 28 C -0.10 -2.08 9.53 -39.77 -0.38 -2.46 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 33 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.14 3.29 6.22 -51.93 -0.32 2.97 16 35 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.14 2.93 5.64 -52.49 -0.30 2.64 16 38 H 0.19 2.44 8.06 -52.49 -0.42 2.01 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.61 8.02 -51.93 -0.42 0.19 16 41 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 42 H 0.13 2.39 8.06 -52.48 -0.42 1.96 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -30.03 358.16 -8.51 -38.54 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.75 Total: 8.20 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.33 Total: -6.93 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 1.24 Total: -33.43 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -1.05 Total: -26.51 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.03 -8.51 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230903265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.899 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds