Wall clock time and date at job start Tue Mar 31 2020 13:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47107 * 2 1 4 4 C 1.34230 * 116.99799 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00489 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99549 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46902 * 179.97438 * 6 4 3 8 8 H 1.08993 * 109.47531 * 54.99781 * 7 6 4 9 9 C 1.50702 * 109.47024 * 174.99750 * 7 6 4 10 10 H 1.08001 * 119.99952 * 239.99776 * 9 7 6 11 11 C 1.37874 * 120.00050 * 59.99752 * 9 7 6 12 12 N 1.31518 * 120.00209 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00028 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47153 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46874 * 120.00272 * 13 11 9 16 16 H 1.48496 * 109.47395 * 240.00233 * 13 11 9 17 17 O 1.42900 * 109.46826 * 294.99530 * 7 6 4 18 18 C 1.35983 * 116.99789 * 155.82405 * 17 7 6 19 19 C 1.37915 * 119.81809 * 5.14753 * 18 17 7 20 20 C 1.39941 * 119.48193 * 179.79613 * 19 18 17 21 21 C 1.45937 * 133.94934 * 180.18257 * 20 19 18 22 22 N 1.30243 * 107.81608 * 180.25543 * 21 20 19 23 23 N 1.39865 * 110.08740 * 359.97438 * 22 21 20 24 24 H 0.97004 * 125.47026 * 179.97438 * 23 22 21 25 25 C 1.37220 * 109.06230 * 0.02562 * 23 22 21 26 26 C 1.39229 * 133.70145 * 180.02562 * 25 23 22 27 27 C 1.50697 * 119.96684 * 359.97438 * 26 25 23 28 28 C 1.36556 * 120.06711 * 180.02562 * 26 25 23 29 29 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46913 * 299.99821 * 1 2 3 31 31 H 1.08996 * 109.46827 * 60.00356 * 1 2 3 32 32 H 1.09001 * 109.47413 * 239.99612 * 2 1 3 33 33 H 1.09001 * 109.47226 * 119.99868 * 2 1 3 34 34 H 1.09000 * 109.47751 * 59.99670 * 6 4 3 35 35 H 1.08998 * 109.47481 * 299.99155 * 6 4 3 36 36 H 0.96992 * 120.00142 * 179.97438 * 12 11 9 37 37 H 1.07999 * 120.25725 * 0.02671 * 19 18 17 38 38 H 1.08001 * 126.08829 * 0.23107 * 21 20 19 39 39 H 1.09004 * 109.46817 * 270.01545 * 27 26 25 40 40 H 1.09003 * 109.47372 * 30.01585 * 27 26 25 41 41 H 1.09003 * 109.47137 * 150.01759 * 27 26 25 42 42 H 1.08004 * 119.61423 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7806 2.2501 -0.8421 9 6 6.0243 4.2446 -0.1235 10 1 6.6591 4.4933 -0.9611 11 6 5.7407 5.1962 0.8330 12 7 4.9681 4.8933 1.8533 13 14 6.4549 6.9156 0.6805 14 1 7.2852 6.9995 -0.5478 15 1 5.3504 7.9050 0.5993 16 1 7.2962 7.2094 1.8683 17 8 5.8946 2.2634 1.2207 18 6 7.1125 1.6588 1.2043 19 6 7.8995 1.7326 0.0742 20 6 9.1535 1.1115 0.0665 21 6 10.2190 0.9929 -0.9236 22 7 11.1783 0.2886 -0.3944 23 7 10.8359 -0.0869 0.9087 24 1 11.3882 -0.6156 1.5056 25 6 9.5928 0.4118 1.2067 26 6 8.7759 0.3494 2.3325 27 6 9.2380 -0.3969 3.5574 28 6 7.5559 0.9630 2.3274 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.5852 3.4691 0.8904 35 1 3.5845 3.4701 -0.8895 36 1 4.7689 5.5626 2.5264 37 1 7.5524 2.2686 -0.7967 38 1 10.2130 1.4139 -1.9182 39 1 8.9178 -1.4368 3.4916 40 1 10.3254 -0.3548 3.6199 41 1 8.8049 0.0610 4.4468 42 1 6.9280 0.9096 3.2045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230903265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:30 Heat of formation + Delta-G solvation = -63.792400 kcal Electronic energy + Delta-G solvation = -26827.662580 eV Core-core repulsion = 22966.717609 eV Total energy + Delta-G solvation = -3860.944972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -42.14266 -41.38467 -39.83514 -37.72085 -37.13072 -35.04618 -33.77517 -32.85036 -31.97702 -31.40602 -29.71738 -28.25699 -27.43632 -24.81967 -23.82463 -23.27972 -22.50937 -22.05020 -21.35452 -19.12267 -18.69595 -18.50584 -17.78361 -17.47359 -17.16808 -16.97871 -16.39177 -15.96525 -15.88572 -15.23385 -15.14530 -14.86916 -14.64666 -14.26094 -14.15493 -14.02317 -13.81675 -13.62534 -13.26251 -13.12805 -12.89934 -12.86936 -12.79488 -12.53726 -12.48324 -12.41246 -12.10404 -11.86012 -11.81446 -11.46609 -11.39620 -11.11061 -11.05324 -10.66294 -10.62358 -9.39352 -8.27073 -8.07895 -6.38204 -0.00812 0.79112 1.36164 1.42326 1.47417 1.56451 1.57350 1.86476 1.87924 2.41623 2.84252 2.93971 3.29131 3.73698 3.79059 3.88880 3.99692 4.02888 4.15943 4.25437 4.35158 4.37205 4.46925 4.56951 4.63886 4.67843 4.79245 4.88491 4.92353 4.94816 4.95419 5.06514 5.16073 5.20237 5.36627 5.46595 5.54553 5.55124 5.60993 5.77680 5.94046 6.02232 6.46061 6.61896 6.70014 6.92463 7.16257 7.43659 8.87796 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.005125 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.438778 B = 5461.742995 C = 7421.802542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.463 3.537 5 O -0.538 6.538 6 C -0.097 4.097 7 C 0.227 3.773 8 H 0.024 0.976 9 C -0.568 4.568 10 H 0.064 0.936 11 C 0.048 3.952 12 N -0.881 5.881 13 Si 0.949 3.051 14 H -0.268 1.268 15 H -0.271 1.271 16 H -0.288 1.288 17 O -0.311 6.311 18 C 0.119 3.881 19 C -0.163 4.163 20 C -0.156 4.156 21 C 0.065 3.935 22 N -0.262 5.262 23 N -0.503 5.503 24 H 0.448 0.552 25 C 0.072 3.928 26 C -0.072 4.072 27 C -0.103 4.103 28 C -0.125 4.125 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.267 0.733 37 H 0.125 0.875 38 H 0.221 0.779 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 -8.788 -0.420 8.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.285 6.285 4 C 0.309 3.691 5 O -0.427 6.427 6 C -0.135 4.135 7 C 0.172 3.828 8 H 0.042 0.958 9 C -0.605 4.605 10 H 0.082 0.918 11 C -0.156 4.156 12 N -0.517 5.517 13 Si 0.775 3.225 14 H -0.192 1.192 15 H -0.197 1.197 16 H -0.215 1.215 17 O -0.224 6.224 18 C 0.071 3.929 19 C -0.184 4.184 20 C -0.164 4.164 21 C -0.132 4.132 22 N -0.076 5.076 23 N -0.223 5.223 24 H 0.294 0.706 25 C -0.042 4.042 26 C -0.076 4.076 27 C -0.159 4.159 28 C -0.146 4.146 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.237 0.763 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.098 -9.521 -0.284 9.588 hybrid contribution -0.255 1.100 0.233 1.153 sum 0.844 -8.421 -0.051 8.464 Atomic orbital electron populations 1.21806 0.89982 1.04392 1.03685 1.23264 0.97406 0.79780 1.02030 1.86550 1.24386 1.33447 1.84091 1.24574 0.80292 0.93550 0.70726 1.90584 1.60997 1.44172 1.46990 1.21671 0.95897 0.88918 1.06992 1.19696 0.89481 0.91709 0.81879 0.95827 1.21617 1.32754 0.95840 1.10289 0.91805 1.25605 0.94085 1.01752 0.94185 1.69976 1.35336 1.35132 1.11292 0.85653 0.78584 0.80317 0.77976 1.19182 1.19661 1.21461 1.86166 1.29972 1.67312 1.38971 1.19033 0.87060 0.92765 0.94089 1.20608 0.94092 1.04495 0.99253 1.19931 0.96611 1.04502 0.95368 1.25428 0.89238 0.97991 1.00532 1.76354 1.23286 1.15270 0.92735 1.45649 1.14373 1.50263 1.12002 0.70588 1.18540 0.88884 1.00569 0.96188 1.18605 0.92489 1.01523 0.94953 1.20749 1.01874 0.99880 0.93407 1.20109 0.96724 1.00006 0.97806 0.87871 0.91525 0.91050 0.91529 0.92239 0.86037 0.86491 0.92391 0.85671 0.76255 0.89779 0.90418 0.90213 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 10.29 71.98 0.74 -1.99 16 2 C 0.05 1.38 6.19 71.98 0.45 1.82 16 3 O -0.37 -13.35 10.22 -51.42 -0.53 -13.88 16 4 C 0.46 19.77 7.84 71.23 0.56 20.33 16 5 O -0.54 -25.32 15.17 27.04 0.41 -24.90 16 6 C -0.10 -4.37 5.22 29.85 0.16 -4.22 16 7 C 0.23 11.18 1.35 29.85 0.04 11.22 16 8 H 0.02 1.18 6.15 -2.39 -0.01 1.16 16 9 C -0.57 -29.09 7.93 25.60 0.20 -28.89 16 10 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 11 C 0.05 2.48 5.24 84.65 0.44 2.92 16 12 N -0.88 -46.73 10.93 21.45 0.23 -46.50 16 13 Si 0.95 41.02 29.54 68.60 2.03 43.05 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 17 O -0.31 -16.12 8.43 -79.54 -0.67 -16.79 16 18 C 0.12 5.59 6.59 22.46 0.15 5.73 16 19 C -0.16 -7.19 8.74 22.61 0.20 -6.99 16 20 C -0.16 -6.01 6.36 -20.24 -0.13 -6.14 16 21 C 0.07 2.07 12.28 86.92 1.07 3.14 16 22 N -0.26 -8.11 12.55 -53.08 -0.67 -8.77 16 23 N -0.50 -14.53 7.38 -51.47 -0.38 -14.91 16 24 H 0.45 9.52 8.89 -213.47 -1.90 7.62 16 25 C 0.07 2.50 6.99 39.17 0.27 2.77 16 26 C -0.07 -2.40 5.86 -20.02 -0.12 -2.52 16 27 C -0.10 -2.33 10.01 71.24 0.71 -1.62 16 28 C -0.13 -5.06 9.53 22.15 0.21 -4.85 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 33 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 34 H 0.12 5.98 6.22 -2.39 -0.01 5.96 16 35 H 0.12 4.73 8.14 -2.39 -0.02 4.71 16 36 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 37 H 0.13 5.66 5.64 -2.91 -0.02 5.64 16 38 H 0.22 5.26 8.06 -2.91 -0.02 5.24 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.08 1.43 8.02 -2.39 -0.02 1.41 16 41 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 42 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -66.25 358.16 4.54 -61.71 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.84 Total: 30.27 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.95 Total: -9.28 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.81 Total: -70.18 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.79 Total: -55.57 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -66.25 4.54 -61.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230903265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.082 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds