Wall clock time and date at job start Tue Mar 31 2020 13:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45207 * 109.46931 * 2 1 4 4 C 1.34233 * 116.99766 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99937 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99976 * 179.97438 * 4 3 2 7 7 N 1.46896 * 109.47290 * 174.26575 * 6 4 3 8 8 C 1.46893 * 111.00080 * 287.83673 * 7 6 4 9 9 C 1.50705 * 109.47293 * 295.44157 * 8 7 6 10 10 H 1.07997 * 120.00101 * 5.34088 * 9 8 7 11 11 C 1.37875 * 120.00079 * 185.34949 * 9 8 7 12 12 N 1.31515 * 119.99979 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00108 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47145 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47205 * 119.99630 * 13 11 9 16 16 H 1.48499 * 109.46965 * 239.99876 * 13 11 9 17 17 C 1.46902 * 110.99741 * 163.88324 * 7 6 4 18 18 C 1.50704 * 109.46813 * 189.99969 * 17 7 6 19 19 C 1.37750 * 119.95530 * 259.72598 * 18 17 7 20 20 C 1.39728 * 119.90473 * 179.75274 * 19 18 17 21 21 C 1.43200 * 120.09533 * 180.22911 * 20 19 18 22 22 N 8.93103 * 163.04684 * 274.81523 * 4 1 2 23 23 C 1.39777 * 119.81449 * 0.52335 * 20 19 18 24 24 C 1.37719 * 119.90045 * 359.72650 * 23 20 19 25 25 C 1.38947 * 119.94754 * 80.00117 * 18 17 7 26 26 O 1.35748 * 119.91048 * 0.02562 * 25 18 17 27 27 H 1.08998 * 109.47120 * 60.00048 * 1 2 3 28 28 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47228 * 300.00174 * 1 2 3 30 30 H 1.09001 * 109.47310 * 239.99632 * 2 1 3 31 31 H 1.08998 * 109.47120 * 119.99952 * 2 1 3 32 32 H 1.08997 * 109.46814 * 54.26201 * 6 4 3 33 33 H 1.09005 * 109.46843 * 294.27312 * 6 4 3 34 34 H 1.09000 * 109.47275 * 55.44049 * 8 7 6 35 35 H 1.08998 * 109.47237 * 175.43769 * 8 7 6 36 36 H 0.97000 * 120.00123 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.46925 * 309.99660 * 17 7 6 38 38 H 1.08997 * 109.47388 * 70.00415 * 17 7 6 39 39 H 1.08006 * 120.04439 * 359.97438 * 19 18 17 40 40 H 1.07997 * 120.05232 * 179.70838 * 23 20 19 41 41 H 1.07999 * 119.94917 * 179.97438 * 24 23 20 42 42 H 0.96701 * 114.00133 * 89.99579 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3812 2.8634 0.1391 8 6 5.7608 2.4682 1.5020 9 6 5.3305 3.5372 2.4733 10 1 4.7502 4.3796 2.1269 11 6 5.6777 3.4398 3.8040 12 7 6.3840 2.4137 4.2259 13 14 5.1449 4.7651 5.0077 14 1 4.3666 5.8044 4.2871 15 1 4.3000 4.1598 6.0684 16 1 6.3451 5.3850 5.6245 17 6 6.0109 4.1369 -0.2345 18 6 7.5044 3.9536 -0.3172 19 6 8.3061 4.3594 0.7269 20 6 9.6903 4.1842 0.6513 21 6 10.5270 4.6001 1.7364 22 7 11.1919 4.9278 2.5967 23 6 10.2565 3.6075 -0.4891 24 6 9.4481 3.2093 -1.5305 25 6 8.0713 3.3807 -1.4490 26 8 7.2783 2.9877 -2.4783 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5045 3.5031 0.8336 33 1 3.6696 3.4341 -0.9373 34 1 5.2724 1.5277 1.7570 35 1 6.8422 2.3423 1.5559 36 1 6.6280 2.3450 5.1622 37 1 5.6302 4.4600 -1.2034 38 1 5.7785 4.8914 0.5171 39 1 7.8649 4.8091 1.6043 40 1 11.3263 3.4746 -0.5535 41 1 9.8848 2.7640 -2.4122 42 1 7.1267 3.6741 -3.1423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232677854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:43 Heat of formation + Delta-G solvation = -64.859963 kcal Electronic energy + Delta-G solvation = -26701.295861 eV Core-core repulsion = 22840.304596 eV Total energy + Delta-G solvation = -3860.991265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.01810 -39.70082 -37.07516 -36.95482 -35.77043 -35.44777 -32.60103 -31.75610 -31.32052 -30.08783 -27.93296 -26.89387 -24.50710 -23.30750 -23.07787 -22.14118 -21.01154 -19.80610 -18.33172 -17.94376 -17.11870 -16.57800 -16.23205 -15.92333 -15.44923 -15.33829 -14.82563 -14.52648 -14.12035 -14.04842 -13.67390 -13.44119 -13.21984 -13.17807 -12.83848 -12.74604 -12.50153 -12.40178 -12.06674 -11.76921 -11.69868 -11.53283 -11.37441 -11.21963 -11.08464 -10.95834 -10.82603 -10.49090 -10.28952 -10.15497 -9.98461 -9.74574 -9.63103 -8.68119 -8.48240 -8.33661 -7.30761 -6.08580 -4.19981 0.96699 1.53185 2.90741 2.96454 3.03989 3.19430 3.21576 3.30728 3.31646 4.03143 4.18525 4.33380 4.38519 4.94230 5.05093 5.06154 5.09179 5.15208 5.21699 5.29753 5.39118 5.43326 5.66292 5.68821 5.81602 5.85923 5.86890 5.88210 6.03516 6.14350 6.21226 6.31477 6.33842 6.53582 6.74187 6.91766 6.94477 7.12411 7.49937 7.77197 7.84265 7.86429 7.87965 8.09922 8.18330 8.48774 8.90996 9.47213 10.95780 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.005076 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.221705 B = 5514.711511 C = 7669.825770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.485 6.485 6 C 0.070 3.930 7 N -0.516 5.516 8 C 0.183 3.817 9 C -0.560 4.560 10 H 0.059 0.941 11 C 0.071 3.929 12 N -0.880 5.880 13 Si 0.880 3.120 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.107 3.893 18 C -0.089 4.089 19 C -0.023 4.023 20 C -0.050 4.050 21 C 0.266 3.734 22 N -0.432 5.432 23 C -0.061 4.061 24 C -0.159 4.159 25 C 0.156 3.844 26 O -0.482 6.482 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 2.393 -14.555 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.306 3.694 5 O -0.369 6.369 6 C -0.059 4.059 7 N -0.241 5.241 8 C 0.058 3.942 9 C -0.599 4.599 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.517 5.517 13 Si 0.708 3.292 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.020 4.020 18 C -0.090 4.090 19 C -0.044 4.044 20 C -0.053 4.053 21 C -0.049 4.049 22 N -0.107 5.107 23 C -0.082 4.082 24 C -0.178 4.178 25 C 0.110 3.890 26 O -0.291 6.291 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.162 0.838 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.149 1.575 -13.079 13.347 hybrid contribution -0.786 1.206 0.992 1.748 sum -2.935 2.781 -12.087 12.745 Atomic orbital electron populations 1.21778 0.93219 1.02464 1.03256 1.22871 0.94784 0.81173 1.02335 1.86478 1.25660 1.31551 1.85042 1.23795 0.79735 0.93313 0.72542 1.90643 1.59977 1.42880 1.43446 1.21392 0.91452 0.89807 1.03285 1.62224 1.03669 1.27716 1.30456 1.19891 0.97884 0.95932 0.80477 1.21727 1.35629 1.08639 0.93930 0.92336 1.24916 0.94752 0.95382 0.98254 1.69958 1.36911 1.28939 1.15891 0.86725 0.78617 0.82161 0.81699 1.19646 1.20897 1.20893 1.20718 0.88917 0.92488 0.99928 1.19997 0.96536 0.98652 0.93784 1.21236 0.90498 0.94898 0.97734 1.16017 0.91529 1.06510 0.91245 1.25664 0.93060 0.93220 0.92983 1.81165 1.09941 1.09784 1.09842 1.20885 0.99811 0.95985 0.91468 1.21206 0.92681 1.03654 1.00236 1.18517 0.88396 0.93372 0.88719 1.84888 1.69313 1.40611 1.34302 0.91768 0.90711 0.91572 0.91701 0.91455 0.89609 0.88717 0.94680 0.93998 0.92739 0.91577 0.92116 0.83754 0.85255 0.84917 0.76014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.29 37.16 0.38 -1.13 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.17 10.22 -39.27 -0.40 -6.57 16 4 C 0.46 8.96 7.54 36.01 0.27 9.23 16 5 O -0.49 -10.97 14.91 -18.75 -0.28 -11.25 16 6 C 0.07 1.24 5.42 -4.98 -0.03 1.21 16 7 N -0.52 -10.26 4.29 -238.97 -1.03 -11.28 16 8 C 0.18 4.52 4.53 -4.98 -0.02 4.49 16 9 C -0.56 -14.09 7.32 -34.44 -0.25 -14.34 16 10 H 0.06 1.41 5.97 -52.49 -0.31 1.09 16 11 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 12 N -0.88 -25.32 13.29 55.43 0.74 -24.58 16 13 Si 0.88 20.61 29.54 -169.99 -5.02 15.59 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.11 1.75 4.53 -4.97 -0.02 1.73 16 18 C -0.09 -1.41 4.58 -104.54 -0.48 -1.89 16 19 C -0.02 -0.38 8.46 -39.20 -0.33 -0.71 16 20 C -0.05 -0.76 5.74 -106.84 -0.61 -1.37 16 21 C 0.27 4.54 15.33 -22.49 -0.34 4.20 16 22 N -0.43 -8.19 18.53 41.82 0.78 -7.41 16 23 C -0.06 -0.76 9.75 -39.20 -0.38 -1.14 16 24 C -0.16 -1.93 9.97 -39.49 -0.39 -2.33 16 25 C 0.16 2.17 6.68 -39.04 -0.26 1.91 16 26 O -0.48 -6.10 12.71 -18.95 -0.24 -6.34 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 32 H 0.09 1.59 6.40 -51.93 -0.33 1.26 16 33 H 0.09 1.32 7.81 -51.93 -0.41 0.92 16 34 H 0.04 1.00 6.59 -51.93 -0.34 0.66 16 35 H 0.04 1.13 6.70 -51.93 -0.35 0.78 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.07 0.87 7.56 -51.93 -0.39 0.47 16 38 H 0.06 1.05 6.21 -51.93 -0.32 0.73 16 39 H 0.14 2.68 8.03 -52.48 -0.42 2.26 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.38 2.68 9.06 45.56 0.41 3.09 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -33.56 366.03 -6.84 -40.40 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.56 Total: 3.16 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -2.34 Total: 2.76 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.49 Total: -43.28 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.92 Total: -24.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.56 -6.84 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232677854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.461 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds