Wall clock time and date at job start Tue Mar 31 2020 13:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45207 * 109.46931 * 2 1 4 4 C 1.34233 * 116.99766 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99937 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99976 * 179.97438 * 4 3 2 7 7 N 1.46896 * 109.47290 * 174.26575 * 6 4 3 8 8 C 1.46893 * 111.00080 * 287.83673 * 7 6 4 9 9 C 1.50705 * 109.47293 * 295.44157 * 8 7 6 10 10 H 1.07997 * 120.00101 * 5.34088 * 9 8 7 11 11 C 1.37875 * 120.00079 * 185.34949 * 9 8 7 12 12 N 1.31515 * 119.99979 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00108 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47145 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47205 * 119.99630 * 13 11 9 16 16 H 1.48499 * 109.46965 * 239.99876 * 13 11 9 17 17 C 1.46902 * 110.99741 * 163.88324 * 7 6 4 18 18 C 1.50704 * 109.46813 * 189.99969 * 17 7 6 19 19 C 1.37750 * 119.95530 * 259.72598 * 18 17 7 20 20 C 1.39728 * 119.90473 * 179.75274 * 19 18 17 21 21 C 1.43200 * 120.09533 * 180.22911 * 20 19 18 22 22 N 8.93103 * 163.04684 * 274.81523 * 4 1 2 23 23 C 1.39777 * 119.81449 * 0.52335 * 20 19 18 24 24 C 1.37719 * 119.90045 * 359.72650 * 23 20 19 25 25 C 1.38947 * 119.94754 * 80.00117 * 18 17 7 26 26 O 1.35748 * 119.91048 * 0.02562 * 25 18 17 27 27 H 1.08998 * 109.47120 * 60.00048 * 1 2 3 28 28 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47228 * 300.00174 * 1 2 3 30 30 H 1.09001 * 109.47310 * 239.99632 * 2 1 3 31 31 H 1.08998 * 109.47120 * 119.99952 * 2 1 3 32 32 H 1.08997 * 109.46814 * 54.26201 * 6 4 3 33 33 H 1.09005 * 109.46843 * 294.27312 * 6 4 3 34 34 H 1.09000 * 109.47275 * 55.44049 * 8 7 6 35 35 H 1.08998 * 109.47237 * 175.43769 * 8 7 6 36 36 H 0.97000 * 120.00123 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.46925 * 309.99660 * 17 7 6 38 38 H 1.08997 * 109.47388 * 70.00415 * 17 7 6 39 39 H 1.08006 * 120.04439 * 359.97438 * 19 18 17 40 40 H 1.07997 * 120.05232 * 179.70838 * 23 20 19 41 41 H 1.07999 * 119.94917 * 179.97438 * 24 23 20 42 42 H 0.96701 * 114.00133 * 89.99579 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3812 2.8634 0.1391 8 6 5.7608 2.4682 1.5020 9 6 5.3305 3.5372 2.4733 10 1 4.7502 4.3796 2.1269 11 6 5.6777 3.4398 3.8040 12 7 6.3840 2.4137 4.2259 13 14 5.1449 4.7651 5.0077 14 1 4.3666 5.8044 4.2871 15 1 4.3000 4.1598 6.0684 16 1 6.3451 5.3850 5.6245 17 6 6.0109 4.1369 -0.2345 18 6 7.5044 3.9536 -0.3172 19 6 8.3061 4.3594 0.7269 20 6 9.6903 4.1842 0.6513 21 6 10.5270 4.6001 1.7364 22 7 11.1919 4.9278 2.5967 23 6 10.2565 3.6075 -0.4891 24 6 9.4481 3.2093 -1.5305 25 6 8.0713 3.3807 -1.4490 26 8 7.2783 2.9877 -2.4783 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5045 3.5031 0.8336 33 1 3.6696 3.4341 -0.9373 34 1 5.2724 1.5277 1.7570 35 1 6.8422 2.3423 1.5559 36 1 6.6280 2.3450 5.1622 37 1 5.6302 4.4600 -1.2034 38 1 5.7785 4.8914 0.5171 39 1 7.8649 4.8091 1.6043 40 1 11.3263 3.4746 -0.5535 41 1 9.8848 2.7640 -2.4122 42 1 7.1267 3.6741 -3.1423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232677854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:42 Heat of formation + Delta-G solvation = -88.222557 kcal Electronic energy + Delta-G solvation = -26702.308939 eV Core-core repulsion = 22840.304596 eV Total energy + Delta-G solvation = -3862.004343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40868 -40.90977 -38.48710 -38.19280 -37.20127 -36.78425 -34.58903 -32.92065 -32.43545 -31.22836 -29.66298 -28.37376 -26.14647 -24.55012 -24.30852 -23.39206 -22.34148 -21.35047 -19.50394 -19.18290 -18.58590 -18.33634 -17.63101 -17.16680 -16.92429 -16.56737 -16.43748 -15.92235 -15.60638 -15.26564 -14.99686 -14.81938 -14.66700 -14.44828 -14.13545 -14.07604 -13.88653 -13.54309 -13.38744 -13.10545 -12.96527 -12.89742 -12.78102 -12.67422 -12.52829 -12.43906 -12.37760 -12.24040 -11.97374 -11.64770 -11.42805 -11.29853 -11.13699 -10.59382 -9.81667 -9.46812 -8.96902 -8.12326 -6.31946 -0.17857 0.41880 1.33322 1.36804 1.41370 1.45623 1.60830 1.75665 1.92863 2.35680 2.81547 2.96870 3.13562 3.40157 3.53650 3.92219 3.97511 4.03122 4.04391 4.17475 4.26113 4.38785 4.41696 4.49977 4.65069 4.71719 4.78138 4.90185 4.96855 5.03249 5.11217 5.18604 5.20450 5.30772 5.42191 5.42494 5.57780 5.58260 5.81112 5.85463 6.01055 6.22479 6.44179 6.45390 6.90443 7.01591 7.08748 7.39666 8.89120 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.005076 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.221705 B = 5514.711511 C = 7669.825770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.528 6.528 6 C 0.068 3.932 7 N -0.522 5.522 8 C 0.208 3.792 9 C -0.546 4.546 10 H 0.073 0.927 11 C 0.017 3.983 12 N -0.924 5.924 13 Si 0.941 3.059 14 H -0.251 1.251 15 H -0.286 1.286 16 H -0.290 1.290 17 C 0.107 3.893 18 C -0.111 4.111 19 C -0.038 4.038 20 C -0.068 4.068 21 C 0.281 3.719 22 N -0.474 5.474 23 C -0.043 4.043 24 C -0.150 4.150 25 C 0.168 3.832 26 O -0.491 6.491 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.143 0.857 34 H -0.011 1.011 35 H 0.011 0.989 36 H 0.259 0.741 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 3.291 -17.442 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.306 3.694 5 O -0.415 6.415 6 C -0.060 4.060 7 N -0.246 5.246 8 C 0.081 3.919 9 C -0.585 4.585 10 H 0.091 0.909 11 C -0.183 4.183 12 N -0.564 5.564 13 Si 0.767 3.233 14 H -0.174 1.174 15 H -0.212 1.212 16 H -0.216 1.216 17 C -0.019 4.019 18 C -0.112 4.112 19 C -0.060 4.060 20 C -0.072 4.072 21 C -0.032 4.032 22 N -0.150 5.150 23 C -0.064 4.064 24 C -0.168 4.168 25 C 0.122 3.878 26 O -0.305 6.305 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.007 0.993 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.131 0.869 40 H 0.178 0.822 41 H 0.186 0.814 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.266 2.521 -16.010 16.533 hybrid contribution -0.527 0.862 1.721 1.995 sum -3.793 3.382 -14.289 15.166 Atomic orbital electron populations 1.21792 0.89864 1.04319 1.03784 1.23208 0.97367 0.79739 1.01806 1.86476 1.24209 1.33283 1.84347 1.24186 0.80283 0.93508 0.71374 1.90627 1.61084 1.44239 1.45595 1.21566 0.89867 0.89212 1.05386 1.62064 1.05364 1.30157 1.27034 1.19332 0.95312 0.93873 0.83366 1.22014 1.34126 1.08549 0.93810 0.90932 1.25707 0.95064 0.97210 1.00321 1.70109 1.39063 1.31264 1.15938 0.85755 0.77947 0.80070 0.79512 1.17447 1.21177 1.21637 1.20834 0.89399 0.90209 1.01463 1.20014 0.96202 1.00353 0.94643 1.21026 0.91423 0.96182 0.97348 1.16117 0.90768 1.08281 0.92023 1.26014 0.92379 0.92143 0.92708 1.81158 1.11430 1.11482 1.10950 1.21231 1.01494 0.93723 0.89937 1.21554 0.91795 1.02474 1.01011 1.18584 0.89255 0.91687 0.88310 1.84821 1.69108 1.42052 1.34507 0.90462 0.88199 0.91750 0.91195 0.93187 0.90276 0.83927 0.99313 0.97075 0.93190 0.87381 0.93489 0.86872 0.82165 0.81351 0.72796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 10.29 71.98 0.74 -1.80 16 2 C 0.05 1.42 6.19 71.98 0.45 1.87 16 3 O -0.37 -11.92 10.22 -51.45 -0.53 -12.45 16 4 C 0.46 17.75 7.54 71.24 0.54 18.29 16 5 O -0.53 -24.42 14.91 21.97 0.33 -24.09 16 6 C 0.07 2.33 5.42 85.56 0.46 2.79 16 7 N -0.52 -20.52 4.29 -909.96 -3.91 -24.42 16 8 C 0.21 10.61 4.53 85.56 0.39 10.99 16 9 C -0.55 -28.02 7.32 25.60 0.19 -27.84 16 10 H 0.07 3.46 5.97 -2.91 -0.02 3.44 16 11 C 0.02 0.91 5.46 84.65 0.46 1.38 16 12 N -0.92 -55.62 13.29 21.45 0.28 -55.33 16 13 Si 0.94 43.16 29.54 68.60 2.03 45.18 16 14 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 17 C 0.11 3.37 4.53 85.56 0.39 3.75 16 18 C -0.11 -3.43 4.58 -19.81 -0.09 -3.52 16 19 C -0.04 -1.32 8.46 22.51 0.19 -1.13 16 20 C -0.07 -2.09 5.74 -21.30 -0.12 -2.21 16 21 C 0.28 9.84 15.33 88.34 1.35 11.20 16 22 N -0.47 -18.50 18.53 19.00 0.35 -18.15 16 23 C -0.04 -0.98 9.75 22.52 0.22 -0.76 16 24 C -0.15 -3.11 9.97 22.33 0.22 -2.89 16 25 C 0.17 4.23 6.68 22.62 0.15 4.38 16 26 O -0.49 -10.59 12.71 -90.73 -1.15 -11.74 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.05 1.51 8.13 -2.39 -0.02 1.50 16 32 H 0.08 2.84 6.40 -2.39 -0.02 2.82 16 33 H 0.14 3.45 7.81 -2.38 -0.02 3.43 16 34 H -0.01 -0.68 6.59 -2.39 -0.02 -0.69 16 35 H 0.01 0.63 6.70 -2.39 -0.02 0.62 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.11 2.43 7.56 -2.39 -0.02 2.42 16 38 H 0.05 1.60 6.21 -2.39 -0.01 1.58 16 39 H 0.11 4.50 8.03 -2.91 -0.02 4.48 16 40 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.41 3.84 9.06 -74.06 -0.67 3.17 16 Total: -1.00 -77.58 366.03 3.34 -74.24 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.40 Total: 12.26 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.54 Total: 14.50 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -3.27 Total: -97.90 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -1.35 Total: -48.28 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -77.58 3.34 -74.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232677854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.978 kcal (2) G-P(sol) polarization free energy of solvation -77.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds