Wall clock time and date at job start Tue Mar 31 2020 13:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47496 * 2 1 4 4 C 1.34228 * 117.00074 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99958 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99920 * 180.02562 * 4 3 2 7 7 N 1.46896 * 109.46951 * 183.90986 * 6 4 3 8 8 C 1.46906 * 111.00038 * 195.79049 * 7 6 4 9 9 C 1.50702 * 109.46586 * 76.16997 * 8 7 6 10 10 H 1.07995 * 120.00161 * 5.63904 * 9 8 7 11 11 C 1.37887 * 119.99618 * 185.64314 * 9 8 7 12 12 N 1.31514 * 119.99701 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99917 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46751 * 90.00253 * 13 11 9 15 15 H 1.48498 * 109.46810 * 210.00272 * 13 11 9 16 16 H 1.48496 * 109.47029 * 330.00418 * 13 11 9 17 17 C 1.46897 * 111.00297 * 71.84020 * 7 6 4 18 18 C 1.50702 * 109.47209 * 189.99880 * 17 7 6 19 19 C 1.38294 * 119.87525 * 259.72321 * 18 17 7 20 20 C 1.37952 * 120.21131 * 179.72401 * 19 18 17 21 21 C 1.39670 * 119.95994 * 0.52739 * 20 19 18 22 22 C 1.43196 * 120.12291 * 179.72612 * 21 20 19 23 23 N 9.28921 * 151.02042 * 18.25367 * 4 1 2 24 24 C 1.39535 * 119.74756 * 359.75108 * 21 20 19 25 25 C 1.38483 * 119.79225 * 359.97438 * 24 21 20 26 26 O 1.35913 * 119.97684 * 180.02562 * 25 24 21 27 27 H 1.08999 * 109.47411 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47305 * 300.00825 * 1 2 3 29 29 H 1.09002 * 109.46362 * 60.00101 * 1 2 3 30 30 H 1.08999 * 109.47305 * 239.99175 * 2 1 3 31 31 H 1.09006 * 109.46799 * 120.00110 * 2 1 3 32 32 H 1.08993 * 109.47307 * 63.90553 * 6 4 3 33 33 H 1.09003 * 109.46925 * 303.90792 * 6 4 3 34 34 H 1.08994 * 109.47169 * 196.16930 * 8 7 6 35 35 H 1.09000 * 109.47123 * 316.17126 * 8 7 6 36 36 H 0.97004 * 119.99313 * 179.97438 * 12 11 9 37 37 H 1.09007 * 109.47091 * 309.99724 * 17 7 6 38 38 H 1.09001 * 109.47694 * 69.99858 * 17 7 6 39 39 H 1.07998 * 119.89178 * 0.02562 * 19 18 17 40 40 H 1.07998 * 120.01814 * 180.27572 * 20 19 18 41 41 H 1.08005 * 120.10188 * 180.02562 * 24 21 20 42 42 H 0.96704 * 113.99516 * 269.97273 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0012 7 7 5.3849 2.8616 -0.0928 8 6 6.0030 4.1421 0.2763 9 6 5.9699 4.3025 1.7744 10 1 5.6172 3.4931 2.3964 11 6 6.3897 5.4826 2.3508 12 7 6.3613 5.6224 3.6582 13 14 7.0003 6.8822 1.2748 14 1 5.8587 7.7575 0.9064 15 1 8.0113 7.6746 2.0199 16 1 7.6161 6.3271 0.0429 17 6 5.8053 2.4421 -1.4363 18 6 7.2814 2.1387 -1.4290 19 6 8.1792 3.0735 -1.9115 20 6 9.5323 2.8053 -1.9028 21 6 9.9979 1.5819 -1.4156 22 6 11.4013 1.2976 -1.4104 23 7 12.5142 1.0720 -1.4093 24 6 9.0902 0.6377 -0.9345 25 6 7.7344 0.9200 -0.9428 26 8 6.8470 0.0032 -0.4746 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.6418 3.4455 0.9240 33 1 3.5303 3.4924 -0.8518 34 1 7.0370 4.1591 -0.0681 35 1 5.4516 4.9592 -0.1889 36 1 6.6570 6.4525 4.0637 37 1 5.2523 1.5491 -1.7278 38 1 5.6025 3.2431 -2.1472 39 1 7.8201 4.0183 -2.2919 40 1 10.2310 3.5393 -2.2763 41 1 9.4439 -0.3100 -0.5561 42 1 6.5224 -0.6098 -1.1485 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233387451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:47 Heat of formation + Delta-G solvation = -57.458286 kcal Electronic energy + Delta-G solvation = -26582.730309 eV Core-core repulsion = 22722.060005 eV Total energy + Delta-G solvation = -3860.670304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23294 -39.80182 -37.27890 -36.90286 -36.00927 -35.59641 -32.63863 -31.95167 -31.53803 -29.89272 -28.64472 -27.57853 -24.83392 -23.06995 -22.63088 -22.28727 -21.05305 -19.85322 -19.33234 -17.33527 -16.97323 -16.84640 -16.42618 -16.17117 -15.87944 -15.65014 -14.80624 -14.54064 -14.22980 -14.09252 -13.88006 -13.64390 -13.57950 -13.29883 -12.95456 -12.90945 -12.76367 -12.50733 -12.29415 -12.07317 -11.88185 -11.74942 -11.59673 -11.51689 -11.29267 -11.19596 -10.70806 -10.59375 -10.33187 -10.27294 -9.95580 -9.81542 -9.38259 -8.82939 -8.59663 -8.46737 -7.56556 -6.07993 -4.05858 0.79193 1.35165 2.65636 2.68972 2.85893 2.97092 3.23147 3.30735 3.32992 3.81227 3.86133 4.37245 4.48350 4.65795 4.89552 4.91139 4.92996 4.99184 5.05279 5.11834 5.22905 5.26100 5.40692 5.51650 5.64947 5.70195 5.71218 5.74771 5.91004 5.92080 5.95120 6.02918 6.19526 6.29283 6.55379 6.66229 6.68915 6.75162 6.77912 7.47141 7.50215 7.66044 7.78960 7.97548 8.26861 8.59566 9.04534 9.52698 11.05166 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008440 B = 0.005262 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.781866 B = 5319.965731 C = 7906.802121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.368 6.368 4 C 0.455 3.545 5 O -0.477 6.477 6 C 0.072 3.928 7 N -0.499 5.499 8 C 0.161 3.839 9 C -0.510 4.510 10 H 0.082 0.918 11 C 0.071 3.929 12 N -0.896 5.896 13 Si 0.871 3.129 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.092 3.908 18 C -0.059 4.059 19 C -0.098 4.098 20 C -0.082 4.082 21 C -0.024 4.024 22 C 0.265 3.735 23 N -0.429 5.429 24 C -0.103 4.103 25 C 0.139 3.861 26 O -0.461 6.461 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.063 0.937 34 H 0.039 0.961 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 -8.732 -14.334 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.286 6.286 4 C 0.296 3.704 5 O -0.362 6.362 6 C -0.057 4.057 7 N -0.223 5.223 8 C 0.036 3.964 9 C -0.548 4.548 10 H 0.100 0.900 11 C -0.131 4.131 12 N -0.535 5.535 13 Si 0.698 3.302 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.191 1.191 17 C -0.036 4.036 18 C -0.061 4.061 19 C -0.117 4.117 20 C -0.103 4.103 21 C -0.028 4.028 22 C -0.050 4.050 23 N -0.105 5.105 24 C -0.124 4.124 25 C 0.093 3.907 26 O -0.269 6.269 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.008 0.992 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.464 -9.352 -13.296 16.858 hybrid contribution -0.365 1.195 -1.206 1.736 sum -4.830 -8.157 -14.502 17.325 Atomic orbital electron populations 1.21792 0.93175 1.02530 1.03400 1.22875 0.94889 0.81038 1.02234 1.86515 1.25625 1.31644 1.84856 1.24040 0.79905 0.93514 0.72943 1.90660 1.59706 1.42485 1.43306 1.21529 0.89640 0.89391 1.05122 1.61536 1.03944 1.34062 1.22806 1.20332 0.94535 0.83394 0.98129 1.21002 1.43448 1.01059 0.89297 0.89980 1.24892 0.95342 0.98131 0.94775 1.69891 1.47715 1.26515 1.09380 0.86937 0.79160 0.82962 0.81143 1.20285 1.21155 1.19115 1.21017 0.91300 1.00051 0.91212 1.20375 0.96400 0.93864 0.95490 1.20928 0.92157 0.98922 0.99645 1.21043 0.95923 0.94820 0.98506 1.15730 0.84455 0.96466 1.06117 1.25699 0.92683 0.93371 0.93290 1.81197 1.11939 1.08130 1.09201 1.21400 0.92350 0.99515 0.99176 1.18003 0.87727 0.90123 0.94877 1.85100 1.60068 1.45278 1.36480 0.90660 0.91472 0.91744 0.91765 0.91400 0.85230 0.91964 0.94331 0.99242 0.92619 0.89988 0.94727 0.84895 0.85082 0.84718 0.76399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.37 -5.24 10.22 -39.25 -0.40 -5.64 16 4 C 0.45 7.37 7.51 36.01 0.27 7.64 16 5 O -0.48 -8.46 14.02 -22.02 -0.31 -8.77 16 6 C 0.07 1.22 5.39 -4.98 -0.03 1.19 16 7 N -0.50 -9.48 4.02 -238.96 -0.96 -10.44 16 8 C 0.16 3.54 3.67 -4.97 -0.02 3.52 16 9 C -0.51 -13.77 9.10 -34.44 -0.31 -14.08 16 10 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 11 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 12 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 13 Si 0.87 20.36 27.36 -169.99 -4.65 15.71 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -5.82 6.71 56.52 0.38 -5.44 16 17 C 0.09 1.39 4.38 -4.98 -0.02 1.37 16 18 C -0.06 -0.88 4.67 -104.39 -0.49 -1.37 16 19 C -0.10 -1.31 8.22 -39.67 -0.33 -1.64 16 20 C -0.08 -1.03 9.75 -39.15 -0.38 -1.41 16 21 C -0.02 -0.31 5.73 -106.95 -0.61 -0.93 16 22 C 0.26 3.69 15.33 -22.49 -0.34 3.35 16 23 N -0.43 -6.73 18.53 41.82 0.78 -5.95 16 24 C -0.10 -1.36 9.69 -39.01 -0.38 -1.74 16 25 C 0.14 2.01 6.67 -39.28 -0.26 1.75 16 26 O -0.46 -6.79 11.89 -25.06 -0.30 -7.09 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 31 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 32 H 0.13 2.41 7.37 -51.93 -0.38 2.03 16 33 H 0.06 0.88 8.05 -51.93 -0.42 0.47 16 34 H 0.04 0.85 5.19 -51.93 -0.27 0.58 16 35 H -0.01 -0.21 7.11 -51.93 -0.37 -0.58 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.08 1.17 6.17 -51.93 -0.32 0.85 16 38 H 0.03 0.47 7.97 -51.93 -0.41 0.05 16 39 H 0.13 1.60 8.03 -52.49 -0.42 1.18 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.38 3.78 9.06 45.56 0.41 4.20 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -33.27 365.12 -6.68 -39.95 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.72 Total: 3.15 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.39 Total: -0.40 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.59 Total: -42.41 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.01 Total: -21.50 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.65 Total: 15.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.27 -6.68 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233387451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.508 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds