Wall clock time and date at job start Tue Mar 31 2020 13:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47496 * 2 1 4 4 C 1.34228 * 117.00074 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99958 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99920 * 180.02562 * 4 3 2 7 7 N 1.46896 * 109.46951 * 183.90986 * 6 4 3 8 8 C 1.46906 * 111.00038 * 195.79049 * 7 6 4 9 9 C 1.50702 * 109.46586 * 76.16997 * 8 7 6 10 10 H 1.07995 * 120.00161 * 5.63904 * 9 8 7 11 11 C 1.37887 * 119.99618 * 185.64314 * 9 8 7 12 12 N 1.31514 * 119.99701 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99917 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46751 * 90.00253 * 13 11 9 15 15 H 1.48498 * 109.46810 * 210.00272 * 13 11 9 16 16 H 1.48496 * 109.47029 * 330.00418 * 13 11 9 17 17 C 1.46897 * 111.00297 * 71.84020 * 7 6 4 18 18 C 1.50702 * 109.47209 * 189.99880 * 17 7 6 19 19 C 1.38294 * 119.87525 * 259.72321 * 18 17 7 20 20 C 1.37952 * 120.21131 * 179.72401 * 19 18 17 21 21 C 1.39670 * 119.95994 * 0.52739 * 20 19 18 22 22 C 1.43196 * 120.12291 * 179.72612 * 21 20 19 23 23 N 9.28921 * 151.02042 * 18.25367 * 4 1 2 24 24 C 1.39535 * 119.74756 * 359.75108 * 21 20 19 25 25 C 1.38483 * 119.79225 * 359.97438 * 24 21 20 26 26 O 1.35913 * 119.97684 * 180.02562 * 25 24 21 27 27 H 1.08999 * 109.47411 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47305 * 300.00825 * 1 2 3 29 29 H 1.09002 * 109.46362 * 60.00101 * 1 2 3 30 30 H 1.08999 * 109.47305 * 239.99175 * 2 1 3 31 31 H 1.09006 * 109.46799 * 120.00110 * 2 1 3 32 32 H 1.08993 * 109.47307 * 63.90553 * 6 4 3 33 33 H 1.09003 * 109.46925 * 303.90792 * 6 4 3 34 34 H 1.08994 * 109.47169 * 196.16930 * 8 7 6 35 35 H 1.09000 * 109.47123 * 316.17126 * 8 7 6 36 36 H 0.97004 * 119.99313 * 179.97438 * 12 11 9 37 37 H 1.09007 * 109.47091 * 309.99724 * 17 7 6 38 38 H 1.09001 * 109.47694 * 69.99858 * 17 7 6 39 39 H 1.07998 * 119.89178 * 0.02562 * 19 18 17 40 40 H 1.07998 * 120.01814 * 180.27572 * 20 19 18 41 41 H 1.08005 * 120.10188 * 180.02562 * 24 21 20 42 42 H 0.96704 * 113.99516 * 269.97273 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0012 7 7 5.3849 2.8616 -0.0928 8 6 6.0030 4.1421 0.2763 9 6 5.9699 4.3025 1.7744 10 1 5.6172 3.4931 2.3964 11 6 6.3897 5.4826 2.3508 12 7 6.3613 5.6224 3.6582 13 14 7.0003 6.8822 1.2748 14 1 5.8587 7.7575 0.9064 15 1 8.0113 7.6746 2.0199 16 1 7.6161 6.3271 0.0429 17 6 5.8053 2.4421 -1.4363 18 6 7.2814 2.1387 -1.4290 19 6 8.1792 3.0735 -1.9115 20 6 9.5323 2.8053 -1.9028 21 6 9.9979 1.5819 -1.4156 22 6 11.4013 1.2976 -1.4104 23 7 12.5142 1.0720 -1.4093 24 6 9.0902 0.6377 -0.9345 25 6 7.7344 0.9200 -0.9428 26 8 6.8470 0.0032 -0.4746 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.6418 3.4455 0.9240 33 1 3.5303 3.4924 -0.8518 34 1 7.0370 4.1591 -0.0681 35 1 5.4516 4.9592 -0.1889 36 1 6.6570 6.4525 4.0637 37 1 5.2523 1.5491 -1.7278 38 1 5.6025 3.2431 -2.1472 39 1 7.8201 4.0183 -2.2919 40 1 10.2310 3.5393 -2.2763 41 1 9.4439 -0.3100 -0.5561 42 1 6.5224 -0.6098 -1.1485 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233387451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:46 Heat of formation + Delta-G solvation = -80.026983 kcal Electronic energy + Delta-G solvation = -26583.708961 eV Core-core repulsion = 22722.060005 eV Total energy + Delta-G solvation = -3861.648956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42996 -40.89762 -38.52696 -38.06314 -37.18943 -36.81901 -34.61818 -33.05439 -32.49599 -30.95003 -30.33939 -28.82230 -26.25449 -24.14085 -23.64702 -23.61394 -22.32598 -21.23516 -20.39887 -18.93336 -18.57883 -17.92902 -17.60750 -17.34137 -17.04286 -16.79116 -16.31006 -15.90196 -15.43873 -15.34313 -15.00113 -14.93646 -14.66666 -14.54876 -14.33753 -14.08066 -13.90383 -13.69710 -13.49875 -13.40835 -13.13331 -12.87641 -12.68424 -12.63074 -12.50703 -12.40119 -12.36445 -12.03776 -11.75957 -11.50239 -11.36662 -11.30519 -11.12302 -10.70312 -9.85954 -9.51966 -8.96586 -8.19578 -6.22801 -0.26691 0.35205 1.40613 1.41556 1.44368 1.54247 1.55036 1.72786 1.87600 2.42109 2.73633 2.80743 3.15207 3.37657 3.49554 3.84506 3.89642 3.96855 4.09299 4.10058 4.19858 4.32124 4.38782 4.43841 4.53975 4.60736 4.65650 4.83977 4.90359 4.92624 4.99177 4.99607 5.07371 5.19559 5.21860 5.28499 5.53481 5.59985 5.63980 5.76913 6.01701 6.25693 6.37841 6.67555 6.85170 7.00678 7.07922 7.40513 8.97630 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008440 B = 0.005262 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.781866 B = 5319.965731 C = 7906.802121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 O -0.371 6.371 4 C 0.460 3.540 5 O -0.496 6.496 6 C 0.071 3.929 7 N -0.524 5.524 8 C 0.173 3.827 9 C -0.510 4.510 10 H 0.027 0.973 11 C 0.006 3.994 12 N -0.953 5.953 13 Si 0.942 3.058 14 H -0.264 1.264 15 H -0.293 1.293 16 H -0.232 1.232 17 C 0.095 3.905 18 C -0.077 4.077 19 C -0.101 4.101 20 C -0.076 4.076 21 C -0.027 4.027 22 C 0.284 3.716 23 N -0.461 5.461 24 C -0.105 4.105 25 C 0.127 3.873 26 O -0.482 6.482 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.006 0.994 36 H 0.264 0.736 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 -8.016 -17.312 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.288 6.288 4 C 0.302 3.698 5 O -0.382 6.382 6 C -0.058 4.058 7 N -0.249 5.249 8 C 0.047 3.953 9 C -0.549 4.549 10 H 0.045 0.955 11 C -0.191 4.191 12 N -0.594 5.594 13 Si 0.765 3.235 14 H -0.189 1.189 15 H -0.219 1.219 16 H -0.155 1.155 17 C -0.032 4.032 18 C -0.079 4.079 19 C -0.119 4.119 20 C -0.096 4.096 21 C -0.030 4.030 22 C -0.030 4.030 23 N -0.137 5.137 24 C -0.126 4.126 25 C 0.081 3.919 26 O -0.293 6.293 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.171 0.829 40 H 0.174 0.826 41 H 0.162 0.838 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -4.783 -8.673 -16.316 19.087 hybrid contribution -0.387 0.802 -0.222 0.918 sum -5.170 -7.871 -16.538 19.031 Atomic orbital electron populations 1.21813 0.90657 1.04218 1.03530 1.23200 0.96835 0.79452 1.02283 1.86500 1.24328 1.33632 1.84350 1.23851 0.80491 0.92976 0.72525 1.90649 1.60319 1.42960 1.44318 1.21480 0.88989 0.90195 1.05120 1.61294 1.05019 1.32608 1.25963 1.20042 0.95418 0.85464 0.94341 1.21245 1.42251 0.99376 0.91994 0.95492 1.25883 0.95643 1.01459 0.96104 1.70086 1.49853 1.27521 1.11982 0.85793 0.78807 0.78862 0.80042 1.18897 1.21941 1.15512 1.21055 0.91703 1.00976 0.89425 1.20520 0.96540 0.94391 0.96476 1.21168 0.92193 0.99310 0.99249 1.21327 0.96177 0.94763 0.97380 1.15785 0.83792 0.96973 1.06492 1.25738 0.92581 0.92424 0.92294 1.81221 1.12887 1.09177 1.10411 1.21495 0.92004 1.00102 0.98969 1.18152 0.88099 0.90362 0.95291 1.85050 1.60357 1.45902 1.37978 0.88176 0.91945 0.90974 0.90742 0.92398 0.87928 0.88676 0.93687 0.97628 0.92755 0.89409 0.92215 0.82945 0.82573 0.83753 0.74441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.06 1.19 6.19 71.98 0.45 1.64 16 3 O -0.37 -10.28 10.22 -51.40 -0.53 -10.81 16 4 C 0.46 14.74 7.51 71.24 0.54 15.28 16 5 O -0.50 -17.54 14.02 25.08 0.35 -17.19 16 6 C 0.07 2.36 5.39 85.56 0.46 2.82 16 7 N -0.52 -19.40 4.02 -909.94 -3.66 -23.06 16 8 C 0.17 7.34 3.67 85.56 0.31 7.65 16 9 C -0.51 -28.16 9.10 25.60 0.23 -27.92 16 10 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 11 C 0.01 0.32 5.47 84.66 0.46 0.78 16 12 N -0.95 -58.99 13.96 21.45 0.30 -58.70 16 13 Si 0.94 41.00 27.36 68.60 1.88 42.88 16 14 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.23 -8.77 6.71 99.48 0.67 -8.10 16 17 C 0.10 2.67 4.38 85.56 0.38 3.04 16 18 C -0.08 -2.12 4.67 -19.71 -0.09 -2.21 16 19 C -0.10 -2.36 8.22 22.22 0.18 -2.17 16 20 C -0.08 -1.66 9.75 22.55 0.22 -1.44 16 21 C -0.03 -0.64 5.73 -21.38 -0.12 -0.77 16 22 C 0.28 7.48 15.33 88.34 1.35 8.83 16 23 N -0.46 -13.93 18.53 19.00 0.35 -13.58 16 24 C -0.10 -2.63 9.69 22.64 0.22 -2.41 16 25 C 0.13 3.53 6.67 22.47 0.15 3.68 16 26 O -0.48 -14.02 11.89 -87.23 -1.04 -15.05 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 31 H 0.06 1.35 8.13 -2.38 -0.02 1.33 16 32 H 0.10 3.95 7.37 -2.39 -0.02 3.93 16 33 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 34 H 0.05 1.86 5.19 -2.39 -0.01 1.85 16 35 H 0.01 0.24 7.11 -2.39 -0.02 0.22 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.09 2.34 6.17 -2.38 -0.01 2.33 16 38 H 0.06 1.38 7.97 -2.39 -0.02 1.36 16 39 H 0.15 2.94 8.03 -2.91 -0.02 2.92 16 40 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 42 H 0.40 7.73 9.06 -74.05 -0.67 7.06 16 Total: -1.00 -74.46 365.12 3.49 -70.97 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.35 Total: 19.11 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 5.48 Total: 5.42 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -3.01 Total: -95.34 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.21 Total: -43.05 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.88 Total: 42.88 kcal Total: -74.46 3.49 -70.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233387451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.054 kcal (2) G-P(sol) polarization free energy of solvation -74.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds