Wall clock time and date at job start Tue Mar 31 2020 13:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45195 * 109.47616 * 2 1 4 4 C 1.34228 * 117.00184 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00268 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99858 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.47270 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46815 * 54.14313 * 7 6 4 9 9 C 1.50702 * 109.46999 * 174.14116 * 7 6 4 10 10 H 1.08002 * 119.99900 * 92.50665 * 9 7 6 11 11 C 1.37868 * 120.00192 * 272.49778 * 9 7 6 12 12 N 1.31515 * 120.00343 * 188.37469 * 11 9 7 13 13 Si 1.86803 * 120.00156 * 8.38118 * 11 9 7 14 14 H 1.48504 * 109.46825 * 89.84691 * 13 11 9 15 15 H 1.48491 * 109.47479 * 209.84938 * 13 11 9 16 16 H 1.48502 * 109.47234 * 329.85259 * 13 11 9 17 17 O 1.42894 * 109.46746 * 294.14346 * 7 6 4 18 18 C 1.35905 * 116.99743 * 155.65978 * 17 7 6 19 19 C 1.39453 * 119.72856 * 5.79061 * 18 17 7 20 20 C 1.36349 * 120.58335 * 179.62344 * 19 18 17 21 21 C 1.39970 * 119.85124 * 0.61507 * 20 19 18 22 22 C 1.45971 * 133.88103 * 179.25101 * 21 20 19 23 23 N 1.30226 * 107.79633 * 180.02562 * 22 21 20 24 24 N 1.39862 * 110.09803 * 0.02562 * 23 22 21 25 25 C 1.46504 * 125.47001 * 179.97438 * 24 23 22 26 26 C 1.37062 * 109.06707 * 0.26432 * 24 23 22 27 27 C 1.38078 * 119.72784 * 185.81003 * 18 17 7 28 28 H 1.09001 * 109.47093 * 59.99365 * 1 2 3 29 29 H 1.09003 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47063 * 299.99926 * 1 2 3 31 31 H 1.09002 * 109.47063 * 240.00074 * 2 1 3 32 32 H 1.09001 * 109.47093 * 120.00635 * 2 1 3 33 33 H 1.09000 * 109.47390 * 59.99993 * 6 4 3 34 34 H 1.09004 * 109.47575 * 300.00285 * 6 4 3 35 35 H 0.96999 * 120.00297 * 180.02562 * 12 11 9 36 36 H 1.08004 * 119.71159 * 0.02562 * 19 18 17 37 37 H 1.07996 * 120.07180 * 179.88847 * 20 19 18 38 38 H 1.07995 * 126.10182 * 0.05775 * 22 21 20 39 39 H 1.08999 * 109.46634 * 90.02598 * 25 24 23 40 40 H 1.09000 * 109.46880 * 210.02696 * 25 24 23 41 41 H 1.08999 * 109.46541 * 330.02875 * 25 24 23 42 42 H 1.08000 * 120.15378 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9372 0.0012 7 6 5.4488 2.8571 0.0010 8 1 5.7800 2.2374 -0.8322 9 6 6.0243 4.2424 -0.1434 10 1 6.2734 4.8180 0.7359 11 6 6.2331 4.7748 -1.3978 12 7 6.8843 5.9098 -1.5305 13 14 5.5910 3.8844 -2.9092 14 1 4.2130 4.3495 -3.2096 15 1 6.4745 4.1738 -4.0670 16 1 5.5747 2.4218 -2.6524 17 8 5.8955 2.2813 1.2301 18 6 7.1113 1.6739 1.2209 19 6 7.9093 1.7412 0.0792 20 6 9.1351 1.1446 0.0535 21 6 9.5941 0.4470 1.1768 22 6 10.8127 -0.2986 1.4766 23 7 10.7134 -0.7507 2.6938 24 7 9.4927 -0.3598 3.2536 25 6 9.0347 -0.6858 4.6065 26 6 8.7909 0.3717 2.3311 27 6 7.5460 0.9950 2.3419 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5846 3.4692 0.8912 34 1 3.5852 3.4697 -0.8888 35 1 7.0308 6.2845 -2.4131 36 1 7.5560 2.2760 -0.7901 37 1 9.7455 1.2004 -0.8356 38 1 11.6478 -0.4481 0.8084 39 1 9.3588 0.0927 5.2971 40 1 7.9467 -0.7501 4.6160 41 1 9.4581 -1.6425 4.9126 42 1 6.9229 0.9469 3.2227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234522270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:49 Heat of formation + Delta-G solvation = -34.458502 kcal Electronic energy + Delta-G solvation = -26684.438599 eV Core-core repulsion = 22824.765641 eV Total energy + Delta-G solvation = -3859.672958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81129 -40.11464 -38.66952 -36.36514 -35.42891 -33.40465 -32.98691 -31.87924 -31.08311 -29.87346 -28.33611 -26.74417 -26.13867 -23.37799 -22.50847 -22.34073 -21.08853 -20.51046 -19.72452 -17.77876 -17.46400 -16.95928 -16.51811 -16.30638 -15.90646 -15.51243 -15.20705 -14.90711 -14.46205 -14.10546 -14.06819 -13.46068 -13.35858 -13.12905 -12.85550 -12.76121 -12.62029 -12.53567 -12.42170 -12.16417 -11.96983 -11.74557 -11.49934 -11.42005 -11.08435 -10.81266 -10.60544 -10.42068 -10.35760 -10.06749 -9.98452 -9.79670 -9.66476 -9.27632 -8.88410 -7.51592 -7.33534 -6.41291 -4.46942 1.50832 2.09270 2.66683 2.68416 2.90546 2.98492 3.05510 3.12707 3.16775 4.06576 4.10652 4.37102 4.71867 4.86093 4.92849 4.97127 5.08249 5.14361 5.16123 5.28182 5.30206 5.47162 5.51778 5.64399 5.69629 5.74095 5.81949 5.86134 5.92382 5.94473 6.02278 6.03491 6.26182 6.49956 6.56955 6.77686 6.80220 6.86357 7.08046 7.18378 7.25178 7.42721 7.95462 8.04751 8.19481 8.31212 8.73229 9.17110 10.70057 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.004906 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.187679 B = 5705.723046 C = 7732.759210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.366 6.366 4 C 0.454 3.546 5 O -0.503 6.503 6 C -0.108 4.108 7 C 0.190 3.810 8 H 0.054 0.946 9 C -0.546 4.546 10 H 0.089 0.911 11 C 0.089 3.911 12 N -0.871 5.871 13 Si 0.845 3.155 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.255 1.255 17 O -0.307 6.307 18 C 0.229 3.771 19 C -0.208 4.208 20 C -0.013 4.013 21 C -0.228 4.228 22 C 0.081 3.919 23 N -0.275 5.275 24 N -0.419 5.419 25 C 0.116 3.884 26 C 0.165 3.835 27 C -0.215 4.215 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.143 0.857 37 H 0.125 0.875 38 H 0.190 0.810 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -10.967 3.793 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.284 6.284 4 C 0.297 3.703 5 O -0.390 6.390 6 C -0.146 4.146 7 C 0.134 3.866 8 H 0.072 0.928 9 C -0.583 4.583 10 H 0.107 0.893 11 C -0.117 4.117 12 N -0.506 5.506 13 Si 0.671 3.329 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.180 1.180 17 O -0.218 6.218 18 C 0.178 3.822 19 C -0.227 4.227 20 C -0.034 4.034 21 C -0.236 4.236 22 C -0.116 4.116 23 N -0.088 5.088 24 N -0.209 5.209 25 C -0.026 4.026 26 C 0.051 3.949 27 C -0.239 4.239 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.161 0.839 37 H 0.143 0.857 38 H 0.207 0.793 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.389 -11.810 4.911 13.232 hybrid contribution -0.729 0.104 -1.620 1.780 sum -4.118 -11.705 3.291 12.837 Atomic orbital electron populations 1.21787 0.93060 1.02535 1.03406 1.22919 0.95022 0.81332 1.02298 1.86561 1.25697 1.31500 1.84596 1.24620 0.79860 0.93963 0.71873 1.90635 1.60194 1.43256 1.44912 1.22194 0.97200 0.89106 1.06071 1.20503 0.88216 0.95000 0.82842 0.92828 1.21238 1.43287 0.98591 0.95134 0.89264 1.24881 0.93598 0.94899 0.98354 1.69876 1.37364 1.18997 1.24352 0.87373 0.80350 0.81430 0.83776 1.19078 1.20143 1.17958 1.85885 1.30560 1.67345 1.38031 1.18476 0.84645 0.87041 0.92038 1.21122 0.95950 1.05561 1.00114 1.20076 0.94597 0.92956 0.95742 1.19701 0.96776 1.10569 0.96537 1.24906 0.97351 0.96133 0.93260 1.76444 1.00831 1.20965 1.10543 1.47935 1.13359 1.47241 1.12350 1.21619 1.00120 1.01713 0.79171 1.18225 0.93226 0.93936 0.89488 1.18781 0.95954 1.09208 0.99912 0.91607 0.90651 0.91549 0.91647 0.91519 0.86948 0.87096 0.91855 0.83912 0.85744 0.79287 0.91753 0.90072 0.90091 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.15 0.38 -1.04 16 2 C 0.06 0.76 6.19 37.15 0.23 0.99 16 3 O -0.37 -5.99 10.22 -39.25 -0.40 -6.39 16 4 C 0.45 8.66 7.84 36.01 0.28 8.94 16 5 O -0.50 -10.79 15.19 -23.83 -0.36 -11.16 16 6 C -0.11 -2.11 5.27 -27.88 -0.15 -2.26 16 7 C 0.19 4.28 0.74 -27.88 -0.02 4.26 16 8 H 0.05 1.27 3.63 -51.93 -0.19 1.08 16 9 C -0.55 -13.89 8.19 -34.44 -0.28 -14.18 16 10 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 11 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 12 N -0.87 -24.05 13.96 55.43 0.77 -23.28 16 13 Si 0.85 18.75 26.09 -169.99 -4.43 14.32 16 14 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.26 -5.55 5.99 56.52 0.34 -5.21 16 17 O -0.31 -6.95 9.07 -32.99 -0.30 -7.25 16 18 C 0.23 4.95 6.58 -39.19 -0.26 4.69 16 19 C -0.21 -4.38 8.60 -39.81 -0.34 -4.72 16 20 C -0.01 -0.24 10.05 -39.61 -0.40 -0.64 16 21 C -0.23 -4.10 6.36 -105.17 -0.67 -4.77 16 22 C 0.08 1.23 12.28 -15.14 -0.19 1.05 16 23 N -0.28 -4.53 12.40 31.87 0.40 -4.13 16 24 N -0.42 -6.91 4.05 -65.47 -0.27 -7.17 16 25 C 0.12 1.36 11.40 59.85 0.68 2.04 16 26 C 0.16 3.06 6.86 -84.18 -0.58 2.49 16 27 C -0.22 -4.19 9.93 -39.27 -0.39 -4.58 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 32 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 33 H 0.11 2.02 8.14 -51.93 -0.42 1.59 16 34 H 0.11 2.07 6.49 -51.93 -0.34 1.74 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 36 H 0.14 3.19 5.61 -52.48 -0.29 2.90 16 37 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -31.55 356.76 -6.52 -38.07 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.51 Total: 7.15 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.79 Total: -5.52 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.90 Total: -34.59 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -1.06 Total: -24.80 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.43 Total: 14.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.55 -6.52 -38.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234522270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.612 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds