Wall clock time and date at job start Tue Mar 31 2020 13:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45195 * 109.47616 * 2 1 4 4 C 1.34228 * 117.00184 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00268 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99858 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.47270 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46815 * 54.14313 * 7 6 4 9 9 C 1.50702 * 109.46999 * 174.14116 * 7 6 4 10 10 H 1.08002 * 119.99900 * 92.50665 * 9 7 6 11 11 C 1.37868 * 120.00192 * 272.49778 * 9 7 6 12 12 N 1.31515 * 120.00343 * 188.37469 * 11 9 7 13 13 Si 1.86803 * 120.00156 * 8.38118 * 11 9 7 14 14 H 1.48504 * 109.46825 * 89.84691 * 13 11 9 15 15 H 1.48491 * 109.47479 * 209.84938 * 13 11 9 16 16 H 1.48502 * 109.47234 * 329.85259 * 13 11 9 17 17 O 1.42894 * 109.46746 * 294.14346 * 7 6 4 18 18 C 1.35905 * 116.99743 * 155.65978 * 17 7 6 19 19 C 1.39453 * 119.72856 * 5.79061 * 18 17 7 20 20 C 1.36349 * 120.58335 * 179.62344 * 19 18 17 21 21 C 1.39970 * 119.85124 * 0.61507 * 20 19 18 22 22 C 1.45971 * 133.88103 * 179.25101 * 21 20 19 23 23 N 1.30226 * 107.79633 * 180.02562 * 22 21 20 24 24 N 1.39862 * 110.09803 * 0.02562 * 23 22 21 25 25 C 1.46504 * 125.47001 * 179.97438 * 24 23 22 26 26 C 1.37062 * 109.06707 * 0.26432 * 24 23 22 27 27 C 1.38078 * 119.72784 * 185.81003 * 18 17 7 28 28 H 1.09001 * 109.47093 * 59.99365 * 1 2 3 29 29 H 1.09003 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47063 * 299.99926 * 1 2 3 31 31 H 1.09002 * 109.47063 * 240.00074 * 2 1 3 32 32 H 1.09001 * 109.47093 * 120.00635 * 2 1 3 33 33 H 1.09000 * 109.47390 * 59.99993 * 6 4 3 34 34 H 1.09004 * 109.47575 * 300.00285 * 6 4 3 35 35 H 0.96999 * 120.00297 * 180.02562 * 12 11 9 36 36 H 1.08004 * 119.71159 * 0.02562 * 19 18 17 37 37 H 1.07996 * 120.07180 * 179.88847 * 20 19 18 38 38 H 1.07995 * 126.10182 * 0.05775 * 22 21 20 39 39 H 1.08999 * 109.46634 * 90.02598 * 25 24 23 40 40 H 1.09000 * 109.46880 * 210.02696 * 25 24 23 41 41 H 1.08999 * 109.46541 * 330.02875 * 25 24 23 42 42 H 1.08000 * 120.15378 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9372 0.0012 7 6 5.4488 2.8571 0.0010 8 1 5.7800 2.2374 -0.8322 9 6 6.0243 4.2424 -0.1434 10 1 6.2734 4.8180 0.7359 11 6 6.2331 4.7748 -1.3978 12 7 6.8843 5.9098 -1.5305 13 14 5.5910 3.8844 -2.9092 14 1 4.2130 4.3495 -3.2096 15 1 6.4745 4.1738 -4.0670 16 1 5.5747 2.4218 -2.6524 17 8 5.8955 2.2813 1.2301 18 6 7.1113 1.6739 1.2209 19 6 7.9093 1.7412 0.0792 20 6 9.1351 1.1446 0.0535 21 6 9.5941 0.4470 1.1768 22 6 10.8127 -0.2986 1.4766 23 7 10.7134 -0.7507 2.6938 24 7 9.4927 -0.3598 3.2536 25 6 9.0347 -0.6858 4.6065 26 6 8.7909 0.3717 2.3311 27 6 7.5460 0.9950 2.3419 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5846 3.4692 0.8912 34 1 3.5852 3.4697 -0.8888 35 1 7.0308 6.2845 -2.4131 36 1 7.5560 2.2760 -0.7901 37 1 9.7455 1.2004 -0.8356 38 1 11.6478 -0.4481 0.8084 39 1 9.3588 0.0927 5.2971 40 1 7.9467 -0.7501 4.6160 41 1 9.4581 -1.6425 4.9126 42 1 6.9229 0.9469 3.2227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234522270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:48 Heat of formation + Delta-G solvation = -53.039447 kcal Electronic energy + Delta-G solvation = -26685.244329 eV Core-core repulsion = 22824.765641 eV Total energy + Delta-G solvation = -3860.478689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18025 -41.57412 -40.23482 -37.76564 -36.93644 -35.19114 -34.31044 -33.28319 -32.39803 -31.25796 -29.80725 -28.45540 -27.35749 -24.72800 -23.96451 -23.69989 -22.51568 -21.83194 -21.20993 -19.56877 -19.02707 -18.52350 -17.89997 -17.63137 -17.43274 -16.96157 -16.49231 -16.43630 -16.13771 -15.32489 -15.28532 -15.11184 -14.78886 -14.57471 -14.40352 -14.08134 -13.77208 -13.73710 -13.67526 -13.46169 -13.32988 -13.11138 -12.89761 -12.72794 -12.49655 -12.43121 -12.15183 -11.88310 -11.75552 -11.59067 -11.52779 -11.42150 -11.15318 -10.93831 -10.82280 -8.97957 -8.79826 -8.41433 -6.51918 0.08476 0.59341 1.17904 1.26863 1.33329 1.38824 1.45916 1.59858 1.69175 2.21216 2.50509 2.86279 2.93783 3.56358 3.73737 3.80865 3.88798 3.99524 4.09423 4.15567 4.20512 4.24945 4.33983 4.40139 4.41478 4.46262 4.48533 4.63419 4.65487 4.72310 4.83005 4.92342 4.96233 5.06056 5.13838 5.25812 5.34273 5.44690 5.48603 5.59393 5.80172 6.05191 6.12869 6.48508 6.67517 6.71984 6.75726 7.17186 8.74147 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.004906 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.187679 B = 5705.723046 C = 7732.759210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.462 3.538 5 O -0.531 6.531 6 C -0.109 4.109 7 C 0.198 3.802 8 H 0.045 0.955 9 C -0.544 4.544 10 H 0.044 0.956 11 C 0.047 3.953 12 N -0.918 5.918 13 Si 0.902 3.098 14 H -0.244 1.244 15 H -0.274 1.274 16 H -0.251 1.251 17 O -0.320 6.320 18 C 0.196 3.804 19 C -0.237 4.237 20 C -0.003 4.003 21 C -0.241 4.241 22 C 0.094 3.906 23 N -0.285 5.285 24 N -0.422 5.422 25 C 0.104 3.896 26 C 0.152 3.848 27 C -0.217 4.217 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.274 0.726 36 H 0.123 0.877 37 H 0.156 0.844 38 H 0.235 0.765 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -13.181 3.508 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.279 6.279 4 C 0.306 3.694 5 O -0.420 6.420 6 C -0.147 4.147 7 C 0.142 3.858 8 H 0.063 0.937 9 C -0.581 4.581 10 H 0.062 0.938 11 C -0.155 4.155 12 N -0.556 5.556 13 Si 0.724 3.276 14 H -0.168 1.168 15 H -0.199 1.199 16 H -0.175 1.175 17 O -0.232 6.232 18 C 0.146 3.854 19 C -0.257 4.257 20 C -0.023 4.023 21 C -0.248 4.248 22 C -0.103 4.103 23 N -0.097 5.097 24 N -0.211 5.211 25 C -0.036 4.036 26 C 0.037 3.963 27 C -0.240 4.240 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.174 0.826 38 H 0.251 0.749 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.765 -14.042 4.667 15.269 hybrid contribution -0.526 0.694 -1.370 1.624 sum -4.292 -13.348 3.296 14.403 Atomic orbital electron populations 1.21817 0.89907 1.04451 1.03814 1.23324 0.97441 0.79457 1.02341 1.86535 1.23766 1.33751 1.83881 1.24259 0.80687 0.93112 0.71312 1.90627 1.61072 1.43930 1.46349 1.22016 0.95209 0.90179 1.07268 1.20289 0.89882 0.92712 0.82869 0.93738 1.21205 1.43565 0.99585 0.93759 0.93798 1.25542 0.93445 0.95397 1.01139 1.70001 1.39264 1.20983 1.25304 0.86456 0.80779 0.80441 0.79878 1.16776 1.19869 1.17492 1.85844 1.31478 1.68008 1.37912 1.18804 0.84716 0.88536 0.93301 1.21069 0.97596 1.07480 0.99588 1.20361 0.93598 0.91314 0.97009 1.20080 0.97970 1.10629 0.96162 1.25586 0.97258 0.94253 0.93209 1.76452 1.00850 1.21247 1.11115 1.48345 1.13027 1.46448 1.13303 1.21976 1.01036 1.03210 0.77357 1.18382 0.93119 0.94129 0.90712 1.18881 0.96660 1.08889 0.99604 0.91189 0.87944 0.91143 0.91622 0.91612 0.85694 0.86019 0.91596 0.85948 0.82634 0.74906 0.90476 0.89069 0.88059 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.29 71.98 0.74 -1.58 16 2 C 0.05 1.17 6.19 71.98 0.45 1.62 16 3 O -0.36 -11.40 10.22 -51.39 -0.53 -11.92 16 4 C 0.46 17.44 7.84 71.24 0.56 18.00 16 5 O -0.53 -22.81 15.19 26.85 0.41 -22.41 16 6 C -0.11 -4.28 5.27 29.85 0.16 -4.12 16 7 C 0.20 9.22 0.74 29.85 0.02 9.24 16 8 H 0.05 2.16 3.63 -2.39 -0.01 2.15 16 9 C -0.54 -29.04 8.19 25.60 0.21 -28.83 16 10 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 11 C 0.05 2.49 5.47 84.65 0.46 2.95 16 12 N -0.92 -52.55 13.96 21.44 0.30 -52.25 16 13 Si 0.90 38.94 26.09 68.60 1.79 40.73 16 14 H -0.24 -9.64 7.11 99.48 0.71 -8.93 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.25 -10.59 5.99 99.48 0.60 -10.00 16 17 O -0.32 -15.12 9.07 -79.53 -0.72 -15.84 16 18 C 0.20 8.79 6.58 22.52 0.15 8.94 16 19 C -0.24 -10.30 8.60 22.12 0.19 -10.11 16 20 C 0.00 -0.09 10.05 22.25 0.22 0.13 16 21 C -0.24 -8.29 6.36 -20.22 -0.13 -8.42 16 22 C 0.09 2.58 12.28 86.94 1.07 3.65 16 23 N -0.28 -8.61 12.40 -53.07 -0.66 -9.27 16 24 N -0.42 -13.14 4.05 -361.06 -1.46 -14.60 16 25 C 0.10 2.25 11.40 127.77 1.46 3.71 16 26 C 0.15 5.52 6.86 39.20 0.27 5.79 16 27 C -0.22 -8.58 9.93 22.47 0.22 -8.36 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 33 H 0.13 4.52 8.14 -2.39 -0.02 4.50 16 34 H 0.12 4.46 6.49 -2.38 -0.02 4.45 16 35 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.12 5.73 5.61 -2.91 -0.02 5.71 16 37 H 0.16 4.42 8.06 -2.91 -0.02 4.39 16 38 H 0.23 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.77 8.13 -2.39 -0.02 1.75 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -71.12 356.76 6.11 -65.01 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.93 Total: 27.95 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 6.05 Total: -7.39 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -1.82 Total: -76.12 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.84 Total: -50.17 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.79 Total: 40.73 kcal Total: -71.12 6.11 -65.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234522270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.969 kcal (2) G-P(sol) polarization free energy of solvation -71.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds