Wall clock time and date at job start Tue Mar 31 2020 13:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42905 * 109.47212 * 2 1 4 4 C 1.35598 * 117.00192 * 179.97438 * 3 2 1 5 5 N 1.30281 * 126.35369 * 359.69462 * 4 3 2 6 6 O 1.41342 * 109.66277 * 179.84796 * 5 4 3 7 7 C 1.34876 * 109.43493 * 0.42934 * 6 5 4 8 8 C 1.38834 * 133.30005 * 179.70839 * 7 6 5 9 9 C 1.38362 * 119.75843 * 180.02562 * 8 7 6 10 10 O 1.35827 * 119.77394 * 180.02562 * 9 8 7 11 11 C 1.42900 * 117.00078 * 5.49162 * 10 9 8 12 12 H 1.09000 * 110.88885 * 32.32895 * 11 10 9 13 13 C 1.55159 * 111.00476 * 156.20879 * 11 10 9 14 14 C 1.54321 * 102.94508 * 153.57804 * 13 11 10 15 15 N 1.47028 * 107.26840 * 337.80482 * 14 13 11 16 16 C 1.36944 * 125.64577 * 178.99740 * 15 14 13 17 17 H 1.07999 * 119.99286 * 179.97438 * 16 15 14 18 18 C 1.38807 * 120.00218 * 359.97246 * 16 15 14 19 19 N 1.31622 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00209 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46989 * 59.99941 * 20 18 16 22 22 H 1.48496 * 109.47207 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47006 * 300.00260 * 20 18 16 24 24 C 1.47465 * 108.72494 * 358.97492 * 15 14 13 25 25 C 1.39290 * 120.45613 * 0.04176 * 9 8 7 26 26 C 1.36534 * 120.42565 * 359.97438 * 25 9 8 27 27 C 1.39640 * 119.87957 * 0.02562 * 26 25 9 28 28 H 1.08994 * 109.47536 * 299.99322 * 1 2 3 29 29 H 1.08998 * 109.47339 * 59.99892 * 1 2 3 30 30 H 1.09003 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47650 * 240.00292 * 2 1 3 32 32 H 1.08998 * 109.47339 * 120.00108 * 2 1 3 33 33 H 1.08000 * 120.12087 * 0.02562 * 8 7 6 34 34 H 1.08999 * 110.71982 * 271.94082 * 13 11 10 35 35 H 1.09005 * 110.72297 * 35.21420 * 13 11 10 36 36 H 1.09001 * 109.88648 * 97.22080 * 14 13 11 37 37 H 1.09006 * 109.88501 * 218.23710 * 14 13 11 38 38 H 0.97003 * 120.00302 * 179.97438 * 19 18 16 39 39 H 1.08997 * 110.35282 * 265.25791 * 24 15 14 40 40 H 1.08993 * 110.40790 * 142.91317 * 24 15 14 41 41 H 1.07998 * 119.78828 * 179.97438 * 25 9 8 42 42 H 1.07996 * 120.06074 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3506 1.5250 0.0005 5 7 4.2537 0.5860 0.0067 6 8 5.5427 1.1658 0.0014 7 6 5.4302 2.5099 0.0013 8 6 6.3576 3.5430 0.0024 9 6 5.9226 4.8565 0.0024 10 8 6.8297 5.8674 0.0029 11 6 8.2063 5.5039 -0.1184 12 1 8.3196 4.6096 -0.7311 13 6 9.0436 6.6789 -0.6893 14 6 10.4542 6.4033 -0.1273 15 7 10.2921 5.5520 1.0604 16 6 11.3087 5.0662 1.8388 17 1 11.0847 4.4465 2.6945 18 6 12.6270 5.3703 1.5281 19 7 12.8999 6.1260 0.4856 20 14 14.0136 4.7072 2.5895 21 1 13.9765 3.2227 2.5816 22 1 15.3163 5.1731 2.0499 23 1 13.8504 5.1990 3.9812 24 6 8.8538 5.3080 1.2753 25 6 4.5608 5.1492 0.0021 26 6 3.6374 4.1434 0.0014 27 6 4.0588 2.8121 0.0014 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 7.4148 3.3223 0.0032 34 1 9.0509 6.6534 -1.7790 35 1 8.6641 7.6345 -0.3274 36 1 11.0565 5.8866 -0.8744 37 1 10.9329 7.3427 0.1496 38 1 13.8210 6.3389 0.2686 39 1 8.4491 6.0283 1.9862 40 1 8.6897 4.2905 1.6300 41 1 4.2332 6.1782 0.0025 42 1 2.5830 4.3771 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234908903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:40 Heat of formation + Delta-G solvation = 25.413025 kcal Electronic energy + Delta-G solvation = -25861.628456 eV Core-core repulsion = 22004.551722 eV Total energy + Delta-G solvation = -3857.076734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91610 -39.96298 -39.16819 -37.34260 -35.93894 -33.34549 -32.36389 -31.64399 -30.53570 -29.81582 -29.07663 -27.47443 -24.78939 -24.19970 -23.29435 -22.54982 -21.81928 -20.46212 -20.20641 -18.88725 -17.68238 -17.34175 -17.00656 -16.92843 -16.29621 -15.72063 -15.28781 -14.98534 -14.75828 -14.33300 -14.24770 -14.09914 -13.83965 -13.51060 -13.23888 -13.06878 -12.66639 -12.43485 -12.27903 -12.22580 -11.94276 -11.70826 -11.56035 -11.40486 -11.19134 -11.00542 -10.81092 -10.41269 -10.38624 -10.19178 -10.10353 -9.95620 -9.74826 -8.75945 -8.66791 -8.37673 -6.94064 -5.78063 -3.13076 0.57524 1.14418 1.95473 1.97143 2.62759 3.19217 3.39030 3.43140 3.44098 3.45015 4.03173 4.27968 4.44074 4.45329 4.45752 4.57963 4.80570 4.84681 5.00492 5.08039 5.19194 5.21757 5.29439 5.30007 5.41589 5.47203 5.52545 5.56648 5.64314 5.85993 5.93910 6.01687 6.12166 6.21579 6.34430 6.36600 6.48522 6.55794 6.65327 7.09142 7.42363 7.46615 7.48733 7.74087 8.16421 9.13706 9.73157 10.36555 11.33635 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022962 B = 0.002598 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.107935 B =10776.422018 C =11693.087245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.277 6.277 4 C 0.322 3.678 5 N -0.357 5.357 6 O -0.075 6.075 7 C 0.145 3.855 8 C -0.232 4.232 9 C 0.212 3.788 10 O -0.291 6.291 11 C 0.057 3.943 12 H 0.087 0.913 13 C -0.135 4.135 14 C 0.178 3.822 15 N -0.601 5.601 16 C -0.232 4.232 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.120 3.880 25 C -0.180 4.180 26 C 0.008 3.992 27 C -0.236 4.236 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.254 0.746 39 H 0.032 0.968 40 H 0.045 0.955 41 H 0.145 0.855 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.635 -5.925 -3.606 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.182 6.182 4 C 0.106 3.894 5 N -0.126 5.126 6 O -0.085 6.085 7 C 0.091 3.909 8 C -0.252 4.252 9 C 0.162 3.838 10 O -0.201 6.201 11 C 0.001 3.999 12 H 0.105 0.895 13 C -0.174 4.174 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.360 4.360 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.007 4.007 25 C -0.199 4.199 26 C -0.012 4.012 27 C -0.241 4.241 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.171 0.829 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.163 0.837 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.365 -6.773 -3.587 24.590 hybrid contribution 0.765 -0.059 0.529 0.932 sum -22.600 -6.832 -3.058 23.807 Atomic orbital electron populations 1.21807 0.91861 1.03401 1.03795 1.22989 0.96144 0.80144 1.03036 1.86234 1.13292 1.31016 1.87613 1.22478 0.84892 0.91774 0.90256 1.80225 0.87087 1.14533 1.30721 1.89180 1.22326 1.14802 1.82206 1.19649 0.92993 0.85301 0.92990 1.20117 1.00334 0.88982 1.15756 1.18898 0.89925 0.86279 0.88664 1.86168 1.17315 1.31350 1.85304 1.24104 0.76091 0.99918 0.99807 0.89479 1.23065 0.97395 0.96827 1.00072 1.21221 0.88922 0.95741 0.88798 1.44333 0.99080 1.58640 1.30886 1.19013 0.84743 1.25836 1.06408 0.90280 1.24821 0.97213 0.99953 0.98266 1.69924 1.18322 1.40824 1.27868 0.86151 0.81307 0.78493 0.79528 1.21037 1.21521 1.21066 1.21934 0.86767 0.98977 0.93028 1.20108 0.89303 1.00705 1.09795 1.20151 1.00084 0.88944 0.92029 1.19717 0.90766 0.92803 1.20788 0.91212 0.91234 0.89760 0.91051 0.91026 0.82894 0.91168 0.90935 0.92971 0.93075 0.93524 0.95005 0.93652 0.83725 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.15 0.38 -0.37 16 2 C 0.05 0.40 6.35 37.15 0.24 0.64 16 3 O -0.28 -2.95 10.20 -18.49 -0.19 -3.14 16 4 C 0.32 4.20 8.17 -14.70 -0.12 4.08 16 5 N -0.36 -5.24 12.24 31.84 0.39 -4.85 16 6 O -0.08 -1.22 12.06 7.53 0.09 -1.12 16 7 C 0.14 2.16 7.47 -38.54 -0.29 1.87 16 8 C -0.23 -3.40 8.95 -39.32 -0.35 -3.75 16 9 C 0.21 2.96 6.68 -39.14 -0.26 2.70 16 10 O -0.29 -4.52 9.94 -19.20 -0.19 -4.71 16 11 C 0.06 0.99 2.80 -24.58 -0.07 0.92 16 12 H 0.09 1.45 6.21 -51.93 -0.32 1.13 16 13 C -0.14 -2.43 6.69 -24.90 -0.17 -2.60 16 14 C 0.18 4.16 5.37 -3.06 -0.02 4.15 16 15 N -0.60 -15.08 3.40 -170.03 -0.58 -15.66 16 16 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.55 10.31 55.49 0.57 -25.98 16 20 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.12 2.45 6.85 -2.50 -0.02 2.44 16 25 C -0.18 -2.06 9.91 -39.81 -0.39 -2.45 16 26 C 0.01 0.08 10.04 -39.67 -0.40 -0.32 16 27 C -0.24 -3.13 6.35 -105.04 -0.67 -3.79 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.15 2.32 5.60 -52.49 -0.29 2.02 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 37 H 0.05 1.32 7.50 -51.93 -0.39 0.93 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.91 7.79 -51.93 -0.40 0.50 16 41 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -30.93 352.59 -7.56 -38.50 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.57 Total: -1.93 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.38 Total: -3.30 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.38 Total: -46.49 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.29 Total: -8.97 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.93 -7.56 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234908903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.910 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds