Wall clock time and date at job start Tue Mar 31 2020 13:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42905 * 109.47212 * 2 1 4 4 C 1.35598 * 117.00192 * 179.97438 * 3 2 1 5 5 N 1.30281 * 126.35369 * 359.69462 * 4 3 2 6 6 O 1.41342 * 109.66277 * 179.84796 * 5 4 3 7 7 C 1.34876 * 109.43493 * 0.42934 * 6 5 4 8 8 C 1.38834 * 133.30005 * 179.70839 * 7 6 5 9 9 C 1.38362 * 119.75843 * 180.02562 * 8 7 6 10 10 O 1.35827 * 119.77394 * 180.02562 * 9 8 7 11 11 C 1.42900 * 117.00078 * 5.49162 * 10 9 8 12 12 H 1.09000 * 110.88885 * 32.32895 * 11 10 9 13 13 C 1.55159 * 111.00476 * 156.20879 * 11 10 9 14 14 C 1.54321 * 102.94508 * 153.57804 * 13 11 10 15 15 N 1.47028 * 107.26840 * 337.80482 * 14 13 11 16 16 C 1.36944 * 125.64577 * 178.99740 * 15 14 13 17 17 H 1.07999 * 119.99286 * 179.97438 * 16 15 14 18 18 C 1.38807 * 120.00218 * 359.97246 * 16 15 14 19 19 N 1.31622 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00209 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46989 * 59.99941 * 20 18 16 22 22 H 1.48496 * 109.47207 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47006 * 300.00260 * 20 18 16 24 24 C 1.47465 * 108.72494 * 358.97492 * 15 14 13 25 25 C 1.39290 * 120.45613 * 0.04176 * 9 8 7 26 26 C 1.36534 * 120.42565 * 359.97438 * 25 9 8 27 27 C 1.39640 * 119.87957 * 0.02562 * 26 25 9 28 28 H 1.08994 * 109.47536 * 299.99322 * 1 2 3 29 29 H 1.08998 * 109.47339 * 59.99892 * 1 2 3 30 30 H 1.09003 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47650 * 240.00292 * 2 1 3 32 32 H 1.08998 * 109.47339 * 120.00108 * 2 1 3 33 33 H 1.08000 * 120.12087 * 0.02562 * 8 7 6 34 34 H 1.08999 * 110.71982 * 271.94082 * 13 11 10 35 35 H 1.09005 * 110.72297 * 35.21420 * 13 11 10 36 36 H 1.09001 * 109.88648 * 97.22080 * 14 13 11 37 37 H 1.09006 * 109.88501 * 218.23710 * 14 13 11 38 38 H 0.97003 * 120.00302 * 179.97438 * 19 18 16 39 39 H 1.08997 * 110.35282 * 265.25791 * 24 15 14 40 40 H 1.08993 * 110.40790 * 142.91317 * 24 15 14 41 41 H 1.07998 * 119.78828 * 179.97438 * 25 9 8 42 42 H 1.07996 * 120.06074 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3506 1.5250 0.0005 5 7 4.2537 0.5860 0.0067 6 8 5.5427 1.1658 0.0014 7 6 5.4302 2.5099 0.0013 8 6 6.3576 3.5430 0.0024 9 6 5.9226 4.8565 0.0024 10 8 6.8297 5.8674 0.0029 11 6 8.2063 5.5039 -0.1184 12 1 8.3196 4.6096 -0.7311 13 6 9.0436 6.6789 -0.6893 14 6 10.4542 6.4033 -0.1273 15 7 10.2921 5.5520 1.0604 16 6 11.3087 5.0662 1.8388 17 1 11.0847 4.4465 2.6945 18 6 12.6270 5.3703 1.5281 19 7 12.8999 6.1260 0.4856 20 14 14.0136 4.7072 2.5895 21 1 13.9765 3.2227 2.5816 22 1 15.3163 5.1731 2.0499 23 1 13.8504 5.1990 3.9812 24 6 8.8538 5.3080 1.2753 25 6 4.5608 5.1492 0.0021 26 6 3.6374 4.1434 0.0014 27 6 4.0588 2.8121 0.0014 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 7.4148 3.3223 0.0032 34 1 9.0509 6.6534 -1.7790 35 1 8.6641 7.6345 -0.3274 36 1 11.0565 5.8866 -0.8744 37 1 10.9329 7.3427 0.1496 38 1 13.8210 6.3389 0.2686 39 1 8.4491 6.0283 1.9862 40 1 8.6897 4.2905 1.6300 41 1 4.2332 6.1782 0.0025 42 1 2.5830 4.3771 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234908903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:39 Heat of formation + Delta-G solvation = 5.353688 kcal Electronic energy + Delta-G solvation = -25862.498294 eV Core-core repulsion = 22004.551722 eV Total energy + Delta-G solvation = -3857.946572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.95904 -41.16444 -40.05461 -38.76953 -37.28972 -34.36803 -34.20326 -32.31582 -31.56154 -31.37910 -30.44067 -29.10473 -26.61297 -25.02585 -24.39111 -23.58932 -22.71527 -22.13805 -21.76009 -19.95433 -19.10603 -18.56839 -18.33978 -17.88630 -17.37120 -16.79065 -16.69610 -16.44178 -16.04767 -15.68524 -15.63955 -15.17078 -15.12724 -14.52328 -14.19825 -14.16915 -13.94827 -13.83553 -13.57396 -13.39678 -13.00147 -12.87670 -12.85061 -12.67100 -12.33630 -12.30271 -12.28943 -12.13270 -12.09659 -11.88310 -11.61720 -11.49101 -11.12031 -10.73239 -9.77063 -9.49263 -8.97148 -7.88868 -5.25927 -0.45328 0.13663 0.94623 0.99520 1.45844 1.48851 1.55011 1.62988 1.96536 2.43612 2.49003 3.02626 3.29986 3.34189 3.54273 3.60899 3.63808 3.84992 3.88604 3.91398 3.96657 4.01024 4.13799 4.25427 4.30627 4.43136 4.58219 4.67742 4.72418 4.80021 4.86238 4.87371 4.92324 4.96568 5.07122 5.14195 5.17820 5.36684 5.40912 5.58876 5.69313 5.71591 6.04803 6.13433 6.24073 7.05504 7.70041 8.32770 9.21089 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022962 B = 0.002598 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.107935 B =10776.422018 C =11693.087245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 O -0.274 6.274 4 C 0.330 3.670 5 N -0.375 5.375 6 O -0.104 6.104 7 C 0.123 3.877 8 C -0.242 4.242 9 C 0.199 3.801 10 O -0.288 6.288 11 C 0.077 3.923 12 H 0.093 0.907 13 C -0.120 4.120 14 C 0.184 3.816 15 N -0.623 5.623 16 C -0.248 4.248 17 H 0.081 0.919 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.980 3.020 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.277 1.277 24 C 0.117 3.883 25 C -0.169 4.169 26 C 0.024 3.976 27 C -0.241 4.241 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.250 0.750 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.176 0.824 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.666 -5.742 -3.571 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.177 6.177 4 C 0.114 3.886 5 N -0.147 5.147 6 O -0.113 6.113 7 C 0.070 3.930 8 C -0.263 4.263 9 C 0.150 3.850 10 O -0.199 6.199 11 C 0.020 3.980 12 H 0.110 0.890 13 C -0.158 4.158 14 C 0.059 3.941 15 N -0.351 5.351 16 C -0.377 4.377 17 H 0.099 0.901 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.808 3.192 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.009 4.009 25 C -0.188 4.188 26 C 0.004 3.996 27 C -0.245 4.245 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.193 0.807 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -26.442 -6.591 -3.545 27.480 hybrid contribution 1.531 -0.179 0.544 1.635 sum -24.910 -6.770 -3.001 25.988 Atomic orbital electron populations 1.21838 0.89335 1.04866 1.04122 1.23307 0.98023 0.78851 1.03013 1.86276 1.11627 1.32791 1.87054 1.22593 0.85705 0.91456 0.88828 1.80189 0.86869 1.15153 1.32509 1.89131 1.23529 1.15657 1.82938 1.19816 0.94138 0.84978 0.94112 1.20065 0.99807 0.89645 1.16756 1.19168 0.90723 0.85512 0.89553 1.86145 1.16236 1.31609 1.85878 1.23665 0.77192 0.99722 0.97378 0.88953 1.22877 0.93878 0.97607 1.01470 1.20979 0.91876 0.93464 0.87779 1.44605 1.00627 1.58838 1.31067 1.19381 0.85849 1.25631 1.06804 0.90090 1.25654 0.99503 1.00644 0.99710 1.70135 1.18230 1.41995 1.29281 0.85138 0.78061 0.77987 0.78050 1.20370 1.21771 1.20293 1.22039 0.84773 0.98865 0.95233 1.20457 0.87778 1.02407 1.08115 1.20582 1.01942 0.87344 0.89686 1.19975 0.89983 0.94022 1.20516 0.90906 0.90828 0.87720 0.91060 0.91177 0.84266 0.88472 0.89636 0.95992 0.96353 0.94113 0.94996 0.93597 0.80678 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 10.28 71.98 0.74 -0.31 16 2 C 0.04 0.58 6.35 71.98 0.46 1.04 16 3 O -0.27 -5.25 10.20 -89.08 -0.91 -6.16 16 4 C 0.33 8.18 8.17 87.20 0.71 8.89 16 5 N -0.37 -11.01 12.24 -167.07 -2.05 -13.05 16 6 O -0.10 -3.45 12.06 29.34 0.35 -3.09 16 7 C 0.12 3.65 7.47 22.95 0.17 3.82 16 8 C -0.24 -7.05 8.95 22.44 0.20 -6.85 16 9 C 0.20 5.18 6.68 22.55 0.15 5.33 16 10 O -0.29 -8.34 9.94 -91.60 -0.91 -9.25 16 11 C 0.08 2.60 2.80 31.99 0.09 2.69 16 12 H 0.09 3.05 6.21 -2.39 -0.01 3.03 16 13 C -0.12 -4.21 6.69 31.78 0.21 -4.00 16 14 C 0.18 8.85 5.37 86.73 0.47 9.32 16 15 N -0.62 -32.01 3.40 -691.86 -2.35 -34.36 16 16 C -0.25 -13.96 10.28 84.03 0.86 -13.10 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 19 N -0.95 -56.36 10.31 21.65 0.22 -56.14 16 20 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 C 0.12 4.80 6.85 86.85 0.60 5.40 16 25 C -0.17 -3.23 9.91 22.12 0.22 -3.01 16 26 C 0.02 0.42 10.04 22.21 0.22 0.64 16 27 C -0.24 -5.93 6.35 -20.14 -0.13 -6.06 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.14 4.34 5.60 -2.91 -0.02 4.33 16 34 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 36 H 0.02 1.17 7.38 -2.39 -0.02 1.15 16 37 H 0.02 0.98 7.50 -2.38 -0.02 0.97 16 38 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.86 7.79 -2.39 -0.02 1.84 16 41 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 42 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -69.30 352.59 2.87 -66.43 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.04 Total: 7.02 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.44 Total: 0.76 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -4.17 Total: -103.55 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.47 Total: -18.50 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.30 2.87 -66.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234908903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.785 kcal (2) G-P(sol) polarization free energy of solvation -69.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds