Wall clock time and date at job start Tue Mar 31 2020 13:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47029 * 2 1 4 4 C 1.35607 * 116.99902 * 180.02562 * 3 2 1 5 5 N 1.30279 * 126.35372 * 359.97438 * 4 3 2 6 6 O 1.41330 * 109.66634 * 180.02562 * 5 4 3 7 7 C 1.34882 * 109.43650 * 0.02562 * 6 5 4 8 8 C 1.38834 * 133.30755 * 180.30086 * 7 6 5 9 9 C 1.38365 * 119.76052 * 180.16885 * 8 7 6 10 10 O 1.35831 * 119.77200 * 179.76804 * 9 8 7 11 11 C 1.42893 * 117.00261 * 353.70782 * 10 9 8 12 12 C 1.53514 * 114.17050 * 201.69052 * 11 10 9 13 13 N 1.47480 * 87.93031 * 220.32488 * 12 11 10 14 14 C 1.46901 * 110.99500 * 138.69994 * 13 12 11 15 15 C 1.50701 * 109.47135 * 169.99948 * 14 13 12 16 16 H 1.08004 * 120.00077 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00289 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00093 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00163 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46653 * 269.99707 * 19 17 15 21 21 H 1.48494 * 109.47309 * 29.99588 * 19 17 15 22 22 H 1.48499 * 109.47219 * 149.99982 * 19 17 15 23 23 C 1.47480 * 87.83644 * 27.01383 * 13 12 11 24 24 C 1.39291 * 120.45185 * 359.49929 * 9 8 7 25 25 C 1.36531 * 120.42830 * 0.24643 * 24 9 8 26 26 C 1.39634 * 119.87922 * 0.02562 * 25 24 9 27 27 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47505 * 300.00408 * 1 2 3 29 29 H 1.09003 * 109.46957 * 60.00984 * 1 2 3 30 30 H 1.09001 * 109.47633 * 239.99423 * 2 1 3 31 31 H 1.09004 * 109.47246 * 119.99481 * 2 1 3 32 32 H 1.08002 * 120.11685 * 359.94221 * 8 7 6 33 33 H 1.09010 * 113.25645 * 334.64300 * 11 10 9 34 34 H 1.09003 * 113.47338 * 105.56357 * 12 11 10 35 35 H 1.08989 * 113.47764 * 335.09801 * 12 11 10 36 36 H 1.09007 * 109.47085 * 50.00563 * 14 13 12 37 37 H 1.08995 * 109.47719 * 290.00499 * 14 13 12 38 38 H 0.96993 * 119.99946 * 179.97438 * 18 17 15 39 39 H 1.09002 * 113.48101 * 87.75280 * 23 13 12 40 40 H 1.09006 * 113.47751 * 218.22075 * 23 13 12 41 41 H 1.07998 * 119.78091 * 180.28004 * 24 9 8 42 42 H 1.07997 * 120.05394 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3507 1.5250 -0.0005 5 7 4.2538 0.5860 -0.0006 6 8 5.5427 1.1657 -0.0006 7 6 5.4303 2.5098 0.0000 8 6 6.3577 3.5430 -0.0051 9 6 5.9227 4.8564 0.0008 10 8 6.8298 5.8674 0.0006 11 6 8.2055 5.5047 0.1337 12 6 9.1074 6.6368 0.6451 13 7 10.1258 6.1910 -0.3240 14 6 10.7730 7.3391 -0.9730 15 6 11.9636 6.8631 -1.7648 16 1 12.2143 5.8127 -1.7843 17 6 12.7330 7.7684 -2.4643 18 7 12.4281 9.0476 -2.4402 19 14 14.2085 7.1783 -3.4462 20 1 15.4166 7.1957 -2.5828 21 1 13.9626 5.7946 -3.9258 22 1 14.4192 8.0757 -4.6105 23 6 9.0256 5.6659 -1.1540 24 6 4.5608 5.1490 0.0013 25 6 3.6375 4.1433 0.0010 26 6 4.0589 2.8121 0.0008 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 7.4149 3.3222 -0.0099 33 1 8.3522 4.5523 0.6435 34 1 9.4131 6.5128 1.6840 35 1 8.7155 7.6321 0.4363 36 1 11.1019 8.0481 -0.2132 37 1 10.0632 7.8262 -1.6416 38 1 12.9696 9.6845 -2.9320 39 1 8.6117 6.4023 -1.8430 40 1 9.2618 4.7192 -1.6398 41 1 4.2333 6.1782 0.0013 42 1 2.5831 4.3771 0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234909897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:33 Heat of formation + Delta-G solvation = 38.188130 kcal Electronic energy + Delta-G solvation = -25259.021727 eV Core-core repulsion = 21402.498963 eV Total energy + Delta-G solvation = -3856.522764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03309 -40.43423 -39.34488 -38.47536 -36.33455 -33.43923 -32.92469 -31.72221 -30.67732 -29.97891 -29.05220 -25.75792 -25.43734 -24.34064 -23.54026 -22.74621 -21.92755 -21.45921 -19.68562 -19.03533 -17.74063 -17.50158 -17.09357 -16.57902 -16.29580 -15.86258 -15.53722 -15.29275 -14.98553 -14.67709 -14.29086 -14.21311 -14.10952 -13.60515 -13.40975 -13.29305 -13.00801 -12.46373 -12.33913 -12.28929 -12.13617 -11.90074 -11.67380 -11.66957 -11.50026 -11.15801 -10.99919 -10.63636 -10.39680 -10.32082 -10.09226 -9.87212 -9.31354 -8.87970 -8.51364 -8.48922 -8.08477 -6.08688 -4.10479 0.45451 1.02372 1.85957 1.86404 2.51882 3.03063 3.30082 3.31926 3.35937 3.40325 3.91854 4.17720 4.34297 4.38601 4.39395 4.46085 4.57454 4.69874 4.73595 4.74575 4.89481 5.00961 5.11653 5.20794 5.24059 5.26840 5.31841 5.50324 5.59177 5.74720 5.83659 5.87979 5.90144 6.01224 6.13724 6.18777 6.20304 6.42209 6.53501 6.97495 7.06694 7.25305 7.54075 7.74774 8.00161 8.34842 8.96609 9.54021 11.02335 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.002128 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.767996 B =13156.658180 C =13658.347427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.277 6.277 4 C 0.323 3.677 5 N -0.356 5.356 6 O -0.076 6.076 7 C 0.144 3.856 8 C -0.232 4.232 9 C 0.210 3.790 10 O -0.288 6.288 11 C 0.035 3.965 12 C 0.005 3.995 13 N -0.459 5.459 14 C 0.161 3.839 15 C -0.508 4.508 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.273 1.273 22 H -0.287 1.287 23 C -0.003 4.003 24 C -0.179 4.179 25 C 0.009 3.991 26 C -0.235 4.235 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.007 0.993 38 H 0.262 0.738 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.146 0.854 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.178 -13.185 6.469 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.181 6.181 4 C 0.107 3.893 5 N -0.125 5.125 6 O -0.086 6.086 7 C 0.090 3.910 8 C -0.252 4.252 9 C 0.161 3.839 10 O -0.199 6.199 11 C -0.021 4.021 12 C -0.124 4.124 13 N -0.184 5.184 14 C 0.035 3.965 15 C -0.546 4.546 16 H 0.083 0.917 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.198 1.198 22 H -0.213 1.213 23 C -0.133 4.133 24 C -0.198 4.198 25 C -0.010 4.010 26 C -0.239 4.239 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.164 0.836 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.519 -14.276 6.570 28.286 hybrid contribution 0.260 0.756 -0.898 1.203 sum -23.259 -13.520 5.672 27.494 Atomic orbital electron populations 1.21811 0.91802 1.03447 1.03835 1.23001 0.96203 0.80058 1.03043 1.86243 1.13218 1.31101 1.87532 1.22485 0.84958 0.91725 0.90151 1.80238 0.87032 1.14432 1.30795 1.89172 1.22468 1.14721 1.82208 1.19642 0.93016 0.85339 0.93036 1.20022 1.00131 0.88924 1.16145 1.18892 0.89915 0.86272 0.88803 1.86256 1.17105 1.31434 1.85060 1.24765 0.76041 1.00856 1.00471 1.24048 0.91375 0.96857 1.00104 1.69066 1.13432 1.27617 1.08302 1.20300 0.94798 0.87406 0.93987 1.21073 1.10654 0.94438 1.28473 0.91742 1.25006 0.98046 0.94822 0.96795 1.69951 1.39704 1.01410 1.42756 0.86450 0.82635 0.78608 0.79456 1.20557 1.19791 1.21256 1.24304 0.91503 1.02359 0.95088 1.20143 0.89321 1.00826 1.09532 1.20179 1.00201 0.88928 0.91736 1.19732 0.90805 0.92832 1.20535 0.89720 0.91203 0.91189 0.91001 0.91024 0.83009 0.86882 0.89431 0.90677 0.94954 0.97496 0.92819 0.90467 0.89782 0.83628 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.16 0.38 -0.27 16 2 C 0.05 0.36 6.35 37.16 0.24 0.60 16 3 O -0.28 -2.70 10.20 -18.52 -0.19 -2.89 16 4 C 0.32 3.86 8.17 -14.70 -0.12 3.74 16 5 N -0.36 -4.78 12.24 31.84 0.39 -4.39 16 6 O -0.08 -1.10 12.06 7.52 0.09 -1.01 16 7 C 0.14 1.90 7.47 -38.54 -0.29 1.61 16 8 C -0.23 -2.91 9.03 -39.31 -0.35 -3.27 16 9 C 0.21 2.61 6.68 -39.14 -0.26 2.35 16 10 O -0.29 -4.01 10.18 -19.21 -0.20 -4.21 16 11 C 0.03 0.51 3.99 -26.20 -0.10 0.40 16 12 C 0.01 0.09 7.52 -7.54 -0.06 0.03 16 13 N -0.46 -9.57 6.32 -246.11 -1.55 -11.12 16 14 C 0.16 4.10 4.57 -4.97 -0.02 4.07 16 15 C -0.51 -14.26 9.39 -34.44 -0.32 -14.58 16 16 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.00 -0.06 7.55 -7.54 -0.06 -0.12 16 24 C -0.18 -1.86 9.91 -39.81 -0.39 -2.25 16 25 C 0.01 0.09 10.04 -39.68 -0.40 -0.31 16 26 C -0.23 -2.82 6.35 -105.04 -0.67 -3.48 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.15 1.80 5.90 -52.49 -0.31 1.49 16 33 H 0.11 1.46 6.00 -51.92 -0.31 1.15 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.28 7.91 -51.94 -0.41 0.87 16 36 H 0.03 0.87 8.08 -51.93 -0.42 0.46 16 37 H 0.01 0.19 7.30 -51.93 -0.38 -0.19 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.08 1.45 7.42 -51.93 -0.39 1.06 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -31.47 359.75 -8.42 -39.89 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.57 Total: -2.53 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.53 Total: -10.03 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: -0.43 Total: -41.22 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.29 Total: -8.11 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.47 -8.42 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234909897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.074 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds