Wall clock time and date at job start Tue Mar 31 2020 13:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47029 * 2 1 4 4 C 1.35607 * 116.99902 * 180.02562 * 3 2 1 5 5 N 1.30279 * 126.35372 * 359.97438 * 4 3 2 6 6 O 1.41330 * 109.66634 * 180.02562 * 5 4 3 7 7 C 1.34882 * 109.43650 * 0.02562 * 6 5 4 8 8 C 1.38834 * 133.30755 * 180.30086 * 7 6 5 9 9 C 1.38365 * 119.76052 * 180.16885 * 8 7 6 10 10 O 1.35831 * 119.77200 * 179.76804 * 9 8 7 11 11 C 1.42893 * 117.00261 * 353.70782 * 10 9 8 12 12 C 1.53514 * 114.17050 * 201.69052 * 11 10 9 13 13 N 1.47480 * 87.93031 * 220.32488 * 12 11 10 14 14 C 1.46901 * 110.99500 * 138.69994 * 13 12 11 15 15 C 1.50701 * 109.47135 * 169.99948 * 14 13 12 16 16 H 1.08004 * 120.00077 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00289 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00093 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00163 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46653 * 269.99707 * 19 17 15 21 21 H 1.48494 * 109.47309 * 29.99588 * 19 17 15 22 22 H 1.48499 * 109.47219 * 149.99982 * 19 17 15 23 23 C 1.47480 * 87.83644 * 27.01383 * 13 12 11 24 24 C 1.39291 * 120.45185 * 359.49929 * 9 8 7 25 25 C 1.36531 * 120.42830 * 0.24643 * 24 9 8 26 26 C 1.39634 * 119.87922 * 0.02562 * 25 24 9 27 27 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47505 * 300.00408 * 1 2 3 29 29 H 1.09003 * 109.46957 * 60.00984 * 1 2 3 30 30 H 1.09001 * 109.47633 * 239.99423 * 2 1 3 31 31 H 1.09004 * 109.47246 * 119.99481 * 2 1 3 32 32 H 1.08002 * 120.11685 * 359.94221 * 8 7 6 33 33 H 1.09010 * 113.25645 * 334.64300 * 11 10 9 34 34 H 1.09003 * 113.47338 * 105.56357 * 12 11 10 35 35 H 1.08989 * 113.47764 * 335.09801 * 12 11 10 36 36 H 1.09007 * 109.47085 * 50.00563 * 14 13 12 37 37 H 1.08995 * 109.47719 * 290.00499 * 14 13 12 38 38 H 0.96993 * 119.99946 * 179.97438 * 18 17 15 39 39 H 1.09002 * 113.48101 * 87.75280 * 23 13 12 40 40 H 1.09006 * 113.47751 * 218.22075 * 23 13 12 41 41 H 1.07998 * 119.78091 * 180.28004 * 24 9 8 42 42 H 1.07997 * 120.05394 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3507 1.5250 -0.0005 5 7 4.2538 0.5860 -0.0006 6 8 5.5427 1.1657 -0.0006 7 6 5.4303 2.5098 0.0000 8 6 6.3577 3.5430 -0.0051 9 6 5.9227 4.8564 0.0008 10 8 6.8298 5.8674 0.0006 11 6 8.2055 5.5047 0.1337 12 6 9.1074 6.6368 0.6451 13 7 10.1258 6.1910 -0.3240 14 6 10.7730 7.3391 -0.9730 15 6 11.9636 6.8631 -1.7648 16 1 12.2143 5.8127 -1.7843 17 6 12.7330 7.7684 -2.4643 18 7 12.4281 9.0476 -2.4402 19 14 14.2085 7.1783 -3.4462 20 1 15.4166 7.1957 -2.5828 21 1 13.9626 5.7946 -3.9258 22 1 14.4192 8.0757 -4.6105 23 6 9.0256 5.6659 -1.1540 24 6 4.5608 5.1490 0.0013 25 6 3.6375 4.1433 0.0010 26 6 4.0589 2.8121 0.0008 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 7.4149 3.3222 -0.0099 33 1 8.3522 4.5523 0.6435 34 1 9.4131 6.5128 1.6840 35 1 8.7155 7.6321 0.4363 36 1 11.1019 8.0481 -0.2132 37 1 10.0632 7.8262 -1.6416 38 1 12.9696 9.6845 -2.9320 39 1 8.6117 6.4023 -1.8430 40 1 9.2618 4.7192 -1.6398 41 1 4.2333 6.1782 0.0013 42 1 2.5831 4.3771 0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234909897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:32 Heat of formation + Delta-G solvation = 14.993620 kcal Electronic energy + Delta-G solvation = -25260.027517 eV Core-core repulsion = 21402.498963 eV Total energy + Delta-G solvation = -3857.528553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.96586 -41.66246 -40.17441 -39.65110 -37.38261 -35.03278 -34.25972 -32.32200 -31.65808 -31.34180 -30.37158 -27.43157 -26.90650 -25.14916 -24.62056 -23.74826 -23.00953 -22.69458 -21.03328 -20.00090 -18.80699 -18.58458 -18.28726 -17.88824 -17.46531 -16.93971 -16.68526 -16.45441 -16.32077 -15.95811 -15.64680 -15.17677 -15.04716 -14.95679 -14.35692 -14.16939 -14.00906 -13.82546 -13.70116 -13.49234 -13.12426 -13.07574 -12.86597 -12.77364 -12.45081 -12.33850 -12.30636 -12.26942 -12.07295 -11.75118 -11.45242 -11.23110 -11.11244 -10.62985 -9.81246 -9.77261 -9.49603 -8.24570 -6.34796 -0.46427 0.12932 0.94058 1.00648 1.40364 1.41489 1.52873 1.62904 1.95386 2.38992 2.42243 3.01330 3.07926 3.20295 3.30163 3.34643 3.57084 3.73072 3.85798 3.91332 3.96091 4.04643 4.20692 4.25066 4.32931 4.43629 4.49697 4.59926 4.64252 4.73705 4.78938 4.84882 4.86882 4.87226 5.00573 5.05901 5.11477 5.17208 5.33680 5.53336 5.70257 5.71724 6.01175 6.04931 6.21375 6.34999 6.78915 7.34780 8.86585 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.002128 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.767996 B =13156.658180 C =13658.347427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.276 6.276 4 C 0.328 3.672 5 N -0.374 5.374 6 O -0.099 6.099 7 C 0.125 3.875 8 C -0.236 4.236 9 C 0.197 3.803 10 O -0.293 6.293 11 C 0.065 3.935 12 C 0.003 3.997 13 N -0.477 5.477 14 C 0.176 3.824 15 C -0.529 4.529 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.266 1.266 22 H -0.280 1.280 23 C -0.010 4.010 24 C -0.173 4.173 25 C 0.022 3.978 26 C -0.242 4.242 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.008 0.992 37 H -0.016 1.016 38 H 0.266 0.734 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.169 0.831 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.840 -14.014 6.667 30.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.179 6.179 4 C 0.113 3.887 5 N -0.146 5.146 6 O -0.108 6.108 7 C 0.071 3.929 8 C -0.256 4.256 9 C 0.149 3.851 10 O -0.204 6.204 11 C 0.009 3.991 12 C -0.126 4.126 13 N -0.201 5.201 14 C 0.049 3.951 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.191 1.191 22 H -0.206 1.206 23 C -0.139 4.139 24 C -0.192 4.192 25 C 0.003 3.997 26 C -0.246 4.246 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.026 0.974 37 H 0.002 0.998 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.187 0.813 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -25.204 -15.114 6.780 30.160 hybrid contribution 0.605 0.969 -0.933 1.475 sum -24.599 -14.145 5.847 28.972 Atomic orbital electron populations 1.21842 0.89479 1.04858 1.04067 1.23300 0.97938 0.78829 1.03059 1.86279 1.11796 1.32818 1.87038 1.22613 0.85687 0.91506 0.88943 1.80199 0.86961 1.15047 1.32400 1.89125 1.23321 1.15483 1.82850 1.19825 0.93961 0.85081 0.94030 1.20059 1.00270 0.89020 1.16292 1.19113 0.90451 0.85786 0.89748 1.86232 1.16618 1.32010 1.85558 1.24373 0.76410 1.00697 0.97644 1.24096 0.90797 0.97427 1.00267 1.68930 1.15655 1.25883 1.09643 1.19948 0.94057 0.88345 0.92761 1.21419 1.11767 0.94364 1.29139 0.92152 1.25915 1.01015 0.94890 0.97773 1.70066 1.41008 1.02570 1.43590 0.85368 0.78867 0.78328 0.77976 1.19728 1.19062 1.20575 1.24327 0.91377 1.01906 0.96298 1.20444 0.88290 1.02194 1.08260 1.20537 1.01815 0.87554 0.89830 1.19991 0.90355 0.93851 1.20400 0.87710 0.90882 0.90992 0.91109 0.90974 0.82868 0.84651 0.87331 0.91264 0.97421 0.99843 0.92546 0.91899 0.89199 0.81323 0.80563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 71.98 0.74 -0.19 16 2 C 0.04 0.54 6.35 71.98 0.46 0.99 16 3 O -0.28 -4.92 10.20 -89.17 -0.91 -5.83 16 4 C 0.33 7.49 8.17 87.20 0.71 8.20 16 5 N -0.37 -9.98 12.24 -167.06 -2.05 -12.03 16 6 O -0.10 -2.89 12.06 29.29 0.35 -2.53 16 7 C 0.12 3.22 7.47 22.95 0.17 3.39 16 8 C -0.24 -5.70 9.03 22.44 0.20 -5.50 16 9 C 0.20 4.55 6.68 22.55 0.15 4.70 16 10 O -0.29 -7.74 10.18 -91.66 -0.93 -8.67 16 11 C 0.07 1.83 3.99 30.94 0.12 1.96 16 12 C 0.00 0.10 7.52 83.58 0.63 0.73 16 13 N -0.48 -20.12 6.32 -932.93 -5.89 -26.01 16 14 C 0.18 9.27 4.57 85.56 0.39 9.66 16 15 C -0.53 -30.28 9.39 25.60 0.24 -30.04 16 16 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 19 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 C -0.01 -0.35 7.55 83.58 0.63 0.28 16 24 C -0.17 -3.11 9.91 22.12 0.22 -2.89 16 25 C 0.02 0.36 10.04 22.21 0.22 0.59 16 26 C -0.24 -5.43 6.35 -20.14 -0.13 -5.55 16 27 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.15 3.52 5.90 -2.91 -0.02 3.51 16 33 H 0.14 3.26 6.00 -2.38 -0.01 3.25 16 34 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.07 2.38 7.91 -2.39 -0.02 2.36 16 36 H 0.01 0.43 8.08 -2.38 -0.02 0.42 16 37 H -0.02 -0.91 7.30 -2.39 -0.02 -0.93 16 38 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.06 2.43 7.42 -2.39 -0.02 2.42 16 40 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 41 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -69.10 359.75 -0.85 -69.95 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.04 Total: 7.26 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 5.23 Total: -13.08 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -7.65 Total: -93.58 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -1.49 Total: -17.04 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -69.10 -0.85 -69.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234909897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.942 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds