Wall clock time and date at job start Tue Mar 31 2020 13:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47338 * 2 1 4 4 C 1.35848 * 116.99992 * 179.97438 * 3 2 1 5 5 C 1.39874 * 119.63447 * 0.21649 * 4 3 2 6 6 C 1.35943 * 120.89125 * 180.27963 * 5 4 3 7 7 C 1.40729 * 119.88599 * 359.77056 * 6 5 4 8 8 C 1.40232 * 120.98763 * 179.97438 * 7 6 5 9 9 C 1.38677 * 119.47277 * 180.02562 * 8 7 6 10 10 C 1.47732 * 119.74985 * 179.97438 * 9 8 7 11 11 C 1.39263 * 120.34253 * 309.99731 * 10 9 8 12 12 C 1.38012 * 119.97494 * 179.97438 * 11 10 9 13 13 C 1.38972 * 120.68931 * 0.02562 * 12 11 10 14 14 C 1.36404 * 120.70228 * 359.97438 * 13 12 11 15 15 C 1.40770 * 119.98807 * 359.74919 * 14 13 12 16 16 C 1.40828 * 120.33179 * 180.27895 * 15 14 13 17 17 H 1.08007 * 119.99784 * 153.32316 * 16 15 14 18 18 C 1.40044 * 120.00412 * 333.31422 * 16 15 14 19 19 N 1.30790 * 119.99755 * 343.94920 * 18 16 15 20 20 Si 1.86796 * 120.00282 * 163.94365 * 18 16 15 21 21 H 1.48503 * 109.46937 * 90.00655 * 20 18 16 22 22 H 1.48504 * 109.47173 * 210.00220 * 20 18 16 23 23 H 1.48496 * 109.47329 * 330.00517 * 20 18 16 24 24 C 1.40707 * 120.49653 * 359.97412 * 9 8 7 25 25 C 1.35654 * 120.82277 * 0.07279 * 24 9 8 26 26 C 1.40824 * 120.04305 * 359.90275 * 25 24 9 27 27 C 1.37709 * 119.63275 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47224 * 59.99907 * 1 2 3 29 29 H 1.08995 * 109.47601 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47068 * 299.99974 * 1 2 3 31 31 H 1.08997 * 109.47099 * 239.99850 * 2 1 3 32 32 H 1.09003 * 109.46805 * 120.00429 * 2 1 3 33 33 H 1.08000 * 119.54927 * 0.02809 * 5 4 3 34 34 H 1.08003 * 120.05564 * 179.78537 * 6 5 4 35 35 H 1.07992 * 120.26019 * 0.04142 * 8 7 6 36 36 H 1.08003 * 120.01050 * 0.02562 * 11 10 9 37 37 H 1.07999 * 119.65412 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.64690 * 179.97438 * 13 12 11 39 39 H 1.07991 * 120.00274 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00006 * 179.97438 * 19 18 16 41 41 H 1.08003 * 119.59195 * 180.02562 * 24 9 8 42 42 H 1.08000 * 119.97763 * 179.97438 * 25 24 9 43 43 H 1.07996 * 120.20621 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3531 1.5252 0.0005 5 6 4.1980 0.4105 -0.0035 6 6 5.5493 0.5589 0.0026 7 6 6.1131 1.8483 0.0083 8 6 7.5038 2.0282 0.0152 9 6 8.0256 3.3131 0.0213 10 6 9.4897 3.5096 0.0291 11 6 10.2852 2.8352 0.9521 12 6 11.6523 3.0241 0.9523 13 6 12.2497 3.8841 0.0386 14 6 11.4973 4.5587 -0.8776 15 6 10.1009 4.3833 -0.9075 16 6 9.3177 5.0717 -1.8541 17 1 8.3746 4.6573 -2.1786 18 6 9.7617 6.2937 -2.3746 19 7 10.7208 6.9501 -1.7747 20 14 8.9841 6.9862 -3.9254 21 1 7.8296 7.8454 -3.5592 22 1 9.9877 7.7940 -4.6641 23 1 8.5170 5.8697 -4.7859 24 6 7.1709 4.4308 0.0199 25 6 5.8233 4.2754 0.0142 26 6 5.2626 2.9837 0.0075 27 6 3.8713 2.8010 0.0000 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.7710 -0.5815 -0.0075 34 1 6.1891 -0.3113 0.0028 35 1 8.1632 1.1729 0.0156 36 1 9.8324 2.1639 1.6668 37 1 12.2643 2.4981 1.6701 38 1 13.3210 4.0197 0.0541 39 1 11.9733 5.2239 -1.5827 40 1 11.0286 7.7963 -2.1353 41 1 7.5930 5.4249 0.0243 42 1 5.1801 5.1430 0.0137 43 1 3.2111 3.6557 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239957008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:08 Heat of formation + Delta-G solvation = 9.055528 kcal Electronic energy + Delta-G solvation = -24881.332628 eV Core-core repulsion = 21434.395842 eV Total energy + Delta-G solvation = -3446.936785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.24253 -38.80065 -37.53524 -35.11062 -33.79788 -32.52303 -31.80783 -30.34789 -29.59418 -29.12224 -27.32412 -25.31108 -23.97477 -23.02912 -21.92028 -21.54552 -20.72195 -20.01228 -18.12757 -17.39607 -16.68557 -16.15263 -16.12960 -15.38560 -15.10195 -14.66879 -14.26238 -13.96051 -13.68634 -13.59393 -13.33155 -13.01065 -12.89191 -12.66721 -12.62924 -12.44006 -12.29420 -12.05843 -11.70378 -11.37334 -11.18816 -11.13721 -11.05521 -11.00444 -10.67610 -10.51386 -10.28363 -10.23531 -9.70328 -9.47544 -9.28117 -9.22873 -7.98964 -7.61295 -7.47251 -7.00410 -6.78664 -4.44035 0.95427 1.46380 2.46790 2.73350 2.90004 3.02475 3.07431 3.18145 3.23592 3.53191 3.85853 4.53676 4.63496 4.73065 4.74399 4.94719 4.98438 5.08479 5.24129 5.39419 5.51866 5.55088 5.56161 5.63382 5.76365 5.77890 5.89279 5.98034 6.10619 6.16975 6.24910 6.34652 6.47717 6.51371 6.56058 6.74061 6.77986 6.94837 7.03235 7.11709 7.15324 7.23319 7.39994 7.50383 7.51779 7.61746 7.84575 7.96922 8.02759 8.17895 8.51962 8.76135 8.85917 10.05206 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.003387 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.823295 B = 8264.892560 C = 9670.989482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.107 3.893 5 C -0.200 4.200 6 C -0.069 4.069 7 C -0.070 4.070 8 C -0.128 4.128 9 C 0.024 3.976 10 C -0.192 4.192 11 C -0.070 4.070 12 C -0.243 4.243 13 C -0.101 4.101 14 C -0.158 4.158 15 C 0.131 3.869 16 C -0.449 4.449 17 H 0.083 0.917 18 C 0.077 3.923 19 N -0.787 5.787 20 Si 0.904 3.096 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.065 4.065 25 C -0.136 4.136 26 C -0.026 4.026 27 C -0.146 4.146 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.283 0.717 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.395 -8.728 1.891 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.235 6.235 4 C 0.062 3.938 5 C -0.218 4.218 6 C -0.087 4.087 7 C -0.070 4.070 8 C -0.146 4.146 9 C 0.024 3.976 10 C -0.193 4.193 11 C -0.088 4.088 12 C -0.263 4.263 13 C -0.120 4.120 14 C -0.177 4.177 15 C 0.128 3.872 16 C -0.478 4.478 17 H 0.101 0.899 18 C -0.142 4.142 19 N -0.411 5.411 20 Si 0.728 3.272 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.083 4.083 25 C -0.154 4.154 26 C -0.026 4.026 27 C -0.165 4.165 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.416 -8.355 1.872 15.082 hybrid contribution -0.106 0.161 -0.678 0.705 sum -12.522 -8.194 1.195 15.013 Atomic orbital electron populations 1.21767 0.93083 1.02585 1.03430 1.22695 0.95553 0.82601 1.01156 1.86029 1.19553 1.28606 1.89355 1.18789 0.81695 0.93954 0.99323 1.20834 0.94451 0.97521 1.08992 1.20849 0.94225 0.96400 0.97258 1.17954 0.93640 0.92427 1.03002 1.21327 0.92644 0.97031 1.03639 1.18809 0.93327 0.91643 0.93799 1.18612 0.89812 1.08947 1.01950 1.20585 0.93416 0.97640 0.97160 1.20280 0.94329 1.07017 1.04635 1.20490 0.97653 0.97267 0.96541 1.21045 0.93792 1.02048 1.00796 1.17531 0.91802 0.88504 0.89368 1.19575 1.05570 1.03079 1.19551 0.89861 1.25950 0.94167 0.96747 0.97358 1.69796 1.22902 1.12695 1.35704 0.86358 0.79660 0.79555 0.81634 1.19227 1.20019 1.18279 1.21237 0.92345 0.99947 0.94765 1.20794 0.95412 0.95190 1.04018 1.17737 0.91645 0.93391 0.99867 1.20336 0.93968 0.94552 1.07613 0.91598 0.90618 0.91619 0.92299 0.92316 0.86108 0.85746 0.86231 0.89172 0.89407 0.89465 0.86429 0.90629 0.84940 0.86240 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.15 0.38 -0.71 16 2 C 0.06 0.52 5.45 37.15 0.20 0.73 16 3 O -0.32 -4.30 10.12 -19.26 -0.19 -4.49 16 4 C 0.11 1.58 6.67 -39.16 -0.26 1.32 16 5 C -0.20 -2.72 8.94 -39.79 -0.36 -3.08 16 6 C -0.07 -1.02 9.74 -39.46 -0.38 -1.41 16 7 C -0.07 -1.23 5.74 -106.82 -0.61 -1.85 16 8 C -0.13 -2.43 9.24 -38.67 -0.36 -2.79 16 9 C 0.02 0.52 4.92 -104.92 -0.52 0.00 16 10 C -0.19 -4.48 5.50 -104.23 -0.57 -5.06 16 11 C -0.07 -1.54 9.48 -39.28 -0.37 -1.91 16 12 C -0.24 -5.32 10.03 -39.39 -0.40 -5.72 16 13 C -0.10 -2.30 9.96 -39.97 -0.40 -2.70 16 14 C -0.16 -3.94 8.62 -39.29 -0.34 -4.28 16 15 C 0.13 3.30 5.55 -106.55 -0.59 2.71 16 16 C -0.45 -11.19 7.09 -37.93 -0.27 -11.46 16 17 H 0.08 2.07 6.66 -52.48 -0.35 1.72 16 18 C 0.08 1.83 5.16 -17.32 -0.09 1.74 16 19 N -0.79 -19.27 10.99 55.55 0.61 -18.66 16 20 Si 0.90 18.10 29.59 -169.99 -5.03 13.07 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 24 C -0.07 -1.32 7.90 -39.57 -0.31 -1.63 16 25 C -0.14 -2.43 9.73 -39.53 -0.38 -2.82 16 26 C -0.03 -0.46 5.75 -106.75 -0.61 -1.08 16 27 C -0.15 -2.32 9.72 -38.99 -0.38 -2.70 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.51 7.63 -51.93 -0.40 0.11 16 32 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 33 H 0.12 1.30 6.22 -52.49 -0.33 0.97 16 34 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.12 2.11 8.02 -52.49 -0.42 1.69 16 36 H 0.09 1.78 8.03 -52.48 -0.42 1.36 16 37 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.12 3.01 6.25 -52.49 -0.33 2.68 16 40 H 0.28 6.32 8.29 -40.82 -0.34 5.99 16 41 H 0.13 2.82 7.30 -52.48 -0.38 2.44 16 42 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 43 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -27.01 358.25 -11.38 -38.38 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.54 Total: 8.98 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: -6.62 Total: -42.68 kcal Atomic # 7 Polarization: -19.27 SS G_CDS: 0.61 Total: -18.66 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.19 Total: -4.49 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.01 -11.38 -38.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239957008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.439 kcal (2) G-P(sol) polarization free energy of solvation -27.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds