Wall clock time and date at job start Tue Mar 31 2020 13:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47338 * 2 1 4 4 C 1.35848 * 116.99992 * 179.97438 * 3 2 1 5 5 C 1.39874 * 119.63447 * 0.21649 * 4 3 2 6 6 C 1.35943 * 120.89125 * 180.27963 * 5 4 3 7 7 C 1.40729 * 119.88599 * 359.77056 * 6 5 4 8 8 C 1.40232 * 120.98763 * 179.97438 * 7 6 5 9 9 C 1.38677 * 119.47277 * 180.02562 * 8 7 6 10 10 C 1.47732 * 119.74985 * 179.97438 * 9 8 7 11 11 C 1.39263 * 120.34253 * 309.99731 * 10 9 8 12 12 C 1.38012 * 119.97494 * 179.97438 * 11 10 9 13 13 C 1.38972 * 120.68931 * 0.02562 * 12 11 10 14 14 C 1.36404 * 120.70228 * 359.97438 * 13 12 11 15 15 C 1.40770 * 119.98807 * 359.74919 * 14 13 12 16 16 C 1.40828 * 120.33179 * 180.27895 * 15 14 13 17 17 H 1.08007 * 119.99784 * 153.32316 * 16 15 14 18 18 C 1.40044 * 120.00412 * 333.31422 * 16 15 14 19 19 N 1.30790 * 119.99755 * 343.94920 * 18 16 15 20 20 Si 1.86796 * 120.00282 * 163.94365 * 18 16 15 21 21 H 1.48503 * 109.46937 * 90.00655 * 20 18 16 22 22 H 1.48504 * 109.47173 * 210.00220 * 20 18 16 23 23 H 1.48496 * 109.47329 * 330.00517 * 20 18 16 24 24 C 1.40707 * 120.49653 * 359.97412 * 9 8 7 25 25 C 1.35654 * 120.82277 * 0.07279 * 24 9 8 26 26 C 1.40824 * 120.04305 * 359.90275 * 25 24 9 27 27 C 1.37709 * 119.63275 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47224 * 59.99907 * 1 2 3 29 29 H 1.08995 * 109.47601 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47068 * 299.99974 * 1 2 3 31 31 H 1.08997 * 109.47099 * 239.99850 * 2 1 3 32 32 H 1.09003 * 109.46805 * 120.00429 * 2 1 3 33 33 H 1.08000 * 119.54927 * 0.02809 * 5 4 3 34 34 H 1.08003 * 120.05564 * 179.78537 * 6 5 4 35 35 H 1.07992 * 120.26019 * 0.04142 * 8 7 6 36 36 H 1.08003 * 120.01050 * 0.02562 * 11 10 9 37 37 H 1.07999 * 119.65412 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.64690 * 179.97438 * 13 12 11 39 39 H 1.07991 * 120.00274 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00006 * 179.97438 * 19 18 16 41 41 H 1.08003 * 119.59195 * 180.02562 * 24 9 8 42 42 H 1.08000 * 119.97763 * 179.97438 * 25 24 9 43 43 H 1.07996 * 120.20621 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3531 1.5252 0.0005 5 6 4.1980 0.4105 -0.0035 6 6 5.5493 0.5589 0.0026 7 6 6.1131 1.8483 0.0083 8 6 7.5038 2.0282 0.0152 9 6 8.0256 3.3131 0.0213 10 6 9.4897 3.5096 0.0291 11 6 10.2852 2.8352 0.9521 12 6 11.6523 3.0241 0.9523 13 6 12.2497 3.8841 0.0386 14 6 11.4973 4.5587 -0.8776 15 6 10.1009 4.3833 -0.9075 16 6 9.3177 5.0717 -1.8541 17 1 8.3746 4.6573 -2.1786 18 6 9.7617 6.2937 -2.3746 19 7 10.7208 6.9501 -1.7747 20 14 8.9841 6.9862 -3.9254 21 1 7.8296 7.8454 -3.5592 22 1 9.9877 7.7940 -4.6641 23 1 8.5170 5.8697 -4.7859 24 6 7.1709 4.4308 0.0199 25 6 5.8233 4.2754 0.0142 26 6 5.2626 2.9837 0.0075 27 6 3.8713 2.8010 0.0000 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.7710 -0.5815 -0.0075 34 1 6.1891 -0.3113 0.0028 35 1 8.1632 1.1729 0.0156 36 1 9.8324 2.1639 1.6668 37 1 12.2643 2.4981 1.6701 38 1 13.3210 4.0197 0.0541 39 1 11.9733 5.2239 -1.5827 40 1 11.0286 7.7963 -2.1353 41 1 7.5930 5.4249 0.0243 42 1 5.1801 5.1430 0.0137 43 1 3.2111 3.6557 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239957008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:06 Heat of formation + Delta-G solvation = -0.550022 kcal Electronic energy + Delta-G solvation = -24881.749155 eV Core-core repulsion = 21434.395842 eV Total energy + Delta-G solvation = -3447.353313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.45917 -40.10854 -39.09890 -36.42925 -35.58333 -33.78060 -32.83390 -31.78917 -31.24357 -30.48134 -28.78122 -27.06799 -24.94742 -24.39546 -23.23889 -22.80872 -22.38659 -21.57817 -19.25973 -19.17802 -18.05467 -17.44881 -17.05109 -16.99135 -16.40471 -16.18792 -15.74676 -15.39051 -15.14975 -14.91459 -14.49940 -14.43237 -14.24841 -13.98686 -13.85868 -13.60234 -13.44247 -13.30548 -13.15961 -12.88348 -12.80343 -12.66368 -12.30800 -12.22316 -12.09127 -12.05579 -11.58044 -11.49557 -11.28829 -11.19164 -11.06017 -10.59526 -9.44027 -9.30495 -9.13327 -8.68352 -8.30317 -6.29200 -0.34243 0.11037 0.93528 1.08520 1.28466 1.36566 1.46809 1.52627 2.16593 2.18804 2.30088 2.74848 3.24606 3.69563 3.77777 3.92826 4.02127 4.10034 4.12773 4.20825 4.36787 4.39349 4.42168 4.45422 4.51375 4.53330 4.64803 4.74318 4.87329 4.92836 4.97467 5.01994 5.09517 5.17339 5.22541 5.30349 5.35794 5.37122 5.39188 5.47999 5.61732 5.74639 5.83139 5.84426 6.02294 6.13839 6.17941 6.24561 6.39099 6.51040 6.69716 6.93785 7.04340 8.30675 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.003387 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.823295 B = 8264.892560 C = 9670.989482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.332 6.332 4 C 0.118 3.882 5 C -0.190 4.190 6 C -0.068 4.068 7 C -0.089 4.089 8 C -0.117 4.117 9 C -0.011 4.011 10 C -0.194 4.194 11 C -0.079 4.079 12 C -0.241 4.241 13 C -0.108 4.108 14 C -0.185 4.185 15 C 0.099 3.901 16 C -0.471 4.471 17 H 0.073 0.927 18 C 0.040 3.960 19 N -0.819 5.819 20 Si 0.968 3.032 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.263 1.263 24 C -0.085 4.085 25 C -0.131 4.131 26 C -0.035 4.035 27 C -0.166 4.166 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.288 0.712 41 H 0.107 0.893 42 H 0.139 0.861 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.776 -11.412 2.188 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.247 6.247 4 C 0.072 3.928 5 C -0.208 4.208 6 C -0.086 4.086 7 C -0.089 4.089 8 C -0.135 4.135 9 C -0.011 4.011 10 C -0.195 4.195 11 C -0.097 4.097 12 C -0.260 4.260 13 C -0.126 4.126 14 C -0.205 4.205 15 C 0.096 3.904 16 C -0.500 4.500 17 H 0.091 0.909 18 C -0.175 4.175 19 N -0.445 5.445 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.189 1.189 23 H -0.187 1.187 24 C -0.103 4.103 25 C -0.149 4.149 26 C -0.035 4.035 27 C -0.185 4.185 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.156 0.844 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.804 -11.050 2.181 18.602 hybrid contribution 0.386 0.754 -0.652 1.070 sum -14.417 -10.296 1.529 17.782 Atomic orbital electron populations 1.21806 0.91552 1.04176 1.03081 1.23095 0.96877 0.80825 1.02412 1.86046 1.18527 1.31394 1.88746 1.18963 0.82749 0.93897 0.97152 1.21217 0.93845 0.98870 1.06845 1.21141 0.95196 0.95929 0.96323 1.18183 0.93025 0.93947 1.03780 1.21449 0.93705 0.96283 1.02106 1.18796 0.92341 0.92953 0.96995 1.18974 0.91441 1.07892 1.01239 1.20918 0.93682 0.97908 0.97232 1.20659 0.94719 1.06245 1.04422 1.20764 0.98760 0.96966 0.96142 1.21035 0.94168 1.03311 1.01959 1.17884 0.92262 0.89790 0.90424 1.19591 1.05584 1.04029 1.20807 0.90878 1.26641 0.94565 0.96613 0.99717 1.69844 1.24272 1.13308 1.37053 0.85405 0.79031 0.78688 0.77966 1.18611 1.18931 1.18710 1.21021 0.93372 0.98705 0.97221 1.20982 0.94631 0.96528 1.02757 1.17910 0.92671 0.93147 0.99783 1.20428 0.93309 0.95894 1.08886 0.92034 0.88048 0.91937 0.91043 0.90892 0.82465 0.82958 0.85098 0.86762 0.86343 0.87311 0.88106 0.90078 0.87449 0.84364 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.04 0.63 5.45 71.98 0.39 1.02 16 3 O -0.33 -7.85 10.12 -91.85 -0.93 -8.78 16 4 C 0.12 3.13 6.67 22.54 0.15 3.28 16 5 C -0.19 -4.39 8.94 22.13 0.20 -4.19 16 6 C -0.07 -1.78 9.74 22.35 0.22 -1.57 16 7 C -0.09 -3.02 5.74 -21.29 -0.12 -3.14 16 8 C -0.12 -4.41 9.24 22.86 0.21 -4.20 16 9 C -0.01 -0.47 4.92 -20.06 -0.10 -0.57 16 10 C -0.19 -9.39 5.50 -19.61 -0.11 -9.50 16 11 C -0.08 -3.49 9.48 22.46 0.21 -3.28 16 12 C -0.24 -10.39 10.03 22.39 0.22 -10.17 16 13 C -0.11 -5.00 9.96 22.02 0.22 -4.78 16 14 C -0.19 -9.72 8.62 22.46 0.19 -9.52 16 15 C 0.10 5.27 5.55 -21.12 -0.12 5.15 16 16 C -0.47 -24.91 7.09 23.34 0.17 -24.74 16 17 H 0.07 3.88 6.66 -2.91 -0.02 3.86 16 18 C 0.04 2.01 5.16 85.29 0.44 2.45 16 19 N -0.82 -42.24 10.99 21.84 0.24 -42.00 16 20 Si 0.97 38.51 29.59 68.60 2.03 40.54 16 21 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 22 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 C -0.09 -3.63 7.90 22.27 0.18 -3.45 16 25 C -0.13 -4.79 9.73 22.30 0.22 -4.57 16 26 C -0.03 -1.21 5.75 -21.24 -0.12 -1.33 16 27 C -0.17 -5.02 9.72 22.65 0.22 -4.80 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.91 7.63 -2.39 -0.02 0.89 16 32 H 0.07 0.90 7.65 -2.39 -0.02 0.89 16 33 H 0.16 2.48 6.22 -2.91 -0.02 2.46 16 34 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.13 4.47 8.02 -2.91 -0.02 4.45 16 36 H 0.11 4.37 8.03 -2.91 -0.02 4.35 16 37 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.10 5.50 6.25 -2.92 -0.02 5.48 16 40 H 0.29 13.49 8.29 -92.71 -0.77 12.72 16 41 H 0.11 4.99 7.30 -2.91 -0.02 4.97 16 42 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 43 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -61.37 358.25 5.77 -55.60 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 1.02 Total: 33.44 kcal Atomic # 6 Polarization: -82.22 SS G_CDS: 3.41 Total: -78.81 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.24 Total: -42.00 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.93 Total: -8.78 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -61.37 5.77 -55.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239957008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.053 kcal (2) G-P(sol) polarization free energy of solvation -61.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds