Wall clock time and date at job start Tue Mar 31 2020 13:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46804 * 2 1 4 4 C 1.35700 * 117.00009 * 179.97438 * 3 2 1 5 5 C 1.39378 * 119.79790 * 359.72516 * 4 3 2 6 6 C 1.35974 * 121.78243 * 179.76997 * 5 4 3 7 7 C 1.40663 * 120.79481 * 0.48408 * 6 5 4 8 8 C 1.40498 * 121.24191 * 179.74322 * 7 6 5 9 9 C 1.36235 * 119.65656 * 180.02562 * 8 7 6 10 10 C 1.39220 * 120.99086 * 359.96051 * 9 8 7 11 11 C 1.36405 * 120.87914 * 0.03812 * 10 9 8 12 12 C 1.39956 * 119.62690 * 359.97438 * 11 10 9 13 13 C 1.39674 * 119.79899 * 180.02562 * 4 3 2 14 14 C 1.47233 * 120.72653 * 359.95210 * 13 4 3 15 15 C 1.39665 * 120.64386 * 89.72495 * 14 13 4 16 16 C 1.37753 * 119.91417 * 179.70104 * 15 14 13 17 17 C 1.38904 * 121.31241 * 0.60730 * 16 15 14 18 18 C 1.36242 * 121.35775 * 359.67781 * 17 16 15 19 19 C 1.40909 * 119.95854 * 0.02562 * 18 17 16 20 20 C 1.40687 * 120.62732 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00003 * 204.46955 * 20 19 18 22 22 C 1.40007 * 120.00439 * 24.47309 * 20 19 18 23 23 N 1.30815 * 119.99759 * 17.50655 * 22 20 19 24 24 Si 1.86804 * 120.00238 * 197.51321 * 22 20 19 25 25 H 1.48497 * 109.46969 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46848 * 119.99616 * 24 22 20 27 27 H 1.48495 * 109.47071 * 239.99488 * 24 22 20 28 28 H 1.08998 * 109.47135 * 60.00135 * 1 2 3 29 29 H 1.09005 * 109.46391 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47201 * 299.99619 * 1 2 3 31 31 H 1.08998 * 109.47135 * 119.99865 * 2 1 3 32 32 H 1.08994 * 109.47201 * 240.00380 * 2 1 3 33 33 H 1.07996 * 119.10751 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.59833 * 180.27443 * 6 5 4 35 35 H 1.08001 * 120.16949 * 0.02913 * 8 7 6 36 36 H 1.07994 * 119.50650 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.55964 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.18438 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.03822 * 0.02562 * 15 14 13 40 40 H 1.07990 * 119.33919 * 180.28046 * 16 15 14 41 41 H 1.07995 * 119.32193 * 179.68863 * 17 16 15 42 42 H 1.07996 * 120.02100 * 180.02562 * 18 17 16 43 43 H 0.97002 * 120.00354 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5252 0.0005 5 6 4.1968 0.4169 0.0069 6 6 5.5502 0.5484 0.0030 7 6 6.1502 1.8206 0.0026 8 6 7.5475 1.9673 0.0040 9 6 8.0943 3.2151 0.0041 10 6 7.2889 4.3507 0.0020 11 6 5.9289 4.2445 0.0005 12 6 5.3339 2.9777 0.0006 13 6 3.8809 2.8178 0.0011 14 6 2.9947 3.9935 0.0001 15 6 2.5602 4.5586 1.2012 16 6 1.7362 5.6623 1.1827 17 6 1.3118 6.2264 -0.0136 18 6 1.6987 5.7145 -1.2154 19 6 2.5462 4.5897 -1.2612 20 6 2.9549 4.0499 -2.4944 21 1 3.2510 3.0132 -2.5586 22 6 2.9779 4.8565 -3.6386 23 7 2.9586 6.1592 -3.5209 24 14 3.0359 4.0726 -5.3332 25 1 3.0505 2.5942 -5.1943 26 1 1.8400 4.4854 -6.1107 27 1 4.2638 4.5149 -6.0414 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.7651 -0.5730 0.0108 34 1 6.1719 -0.3347 0.0037 35 1 8.1848 1.0954 0.0050 36 1 9.1686 3.3251 0.0056 37 1 7.7469 5.3288 0.0016 38 1 5.3149 5.1329 -0.0007 39 1 2.8742 4.1338 2.1432 40 1 1.4095 6.0944 2.1169 41 1 0.6618 7.0886 0.0095 42 1 1.3561 6.1705 -2.1325 43 1 2.9741 6.7182 -4.3135 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241924829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:12 Heat of formation + Delta-G solvation = 18.343412 kcal Electronic energy + Delta-G solvation = -26333.205622 eV Core-core repulsion = 22886.671590 eV Total energy + Delta-G solvation = -3446.534032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.93426 -38.35037 -37.11595 -35.00415 -33.68556 -32.56244 -31.22268 -29.79774 -29.46350 -29.05830 -27.37216 -25.17159 -23.68571 -22.77351 -21.78872 -21.57385 -20.72209 -19.38244 -17.93005 -17.22696 -16.61842 -16.15168 -15.68117 -15.34482 -15.03689 -14.56564 -13.99522 -13.77274 -13.55283 -13.31168 -13.23544 -12.85112 -12.60684 -12.54379 -12.36901 -12.29528 -12.27324 -11.77177 -11.56320 -11.15595 -11.07121 -10.90053 -10.87557 -10.78279 -10.64354 -10.38049 -10.21271 -10.09365 -9.68036 -9.35192 -9.17712 -8.90540 -7.89046 -7.38114 -7.22294 -6.89429 -6.75812 -4.32408 1.06106 1.60389 2.58409 2.73476 3.02208 3.06025 3.12034 3.28785 3.50400 3.72452 3.91452 4.63904 4.64941 5.02196 5.14591 5.22408 5.24624 5.33604 5.41758 5.43375 5.58096 5.62571 5.70410 5.80423 5.87087 5.93447 6.00588 6.23771 6.28583 6.31845 6.43234 6.47566 6.48061 6.61452 6.69323 6.85428 6.92434 6.98837 7.05150 7.07361 7.28263 7.35716 7.41501 7.48550 7.63388 7.94174 8.04627 8.13161 8.21271 8.28719 8.65007 8.86527 9.01632 10.12183 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008113 B = 0.006687 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.409053 B = 4185.988976 C = 4991.829221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.294 6.294 4 C 0.103 3.897 5 C -0.176 4.176 6 C -0.100 4.100 7 C -0.076 4.076 8 C -0.113 4.113 9 C -0.127 4.127 10 C -0.132 4.132 11 C -0.073 4.073 12 C -0.012 4.012 13 C 0.011 3.989 14 C -0.180 4.180 15 C -0.063 4.063 16 C -0.254 4.254 17 C -0.094 4.094 18 C -0.173 4.173 19 C 0.140 3.860 20 C -0.437 4.437 21 H 0.077 0.923 22 C 0.078 3.922 23 N -0.784 5.784 24 Si 0.902 3.098 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.133 0.867 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 -8.973 4.008 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.207 6.207 4 C 0.058 3.942 5 C -0.194 4.194 6 C -0.118 4.118 7 C -0.076 4.076 8 C -0.131 4.131 9 C -0.145 4.145 10 C -0.150 4.150 11 C -0.091 4.091 12 C -0.012 4.012 13 C 0.010 3.990 14 C -0.182 4.182 15 C -0.081 4.081 16 C -0.273 4.273 17 C -0.113 4.113 18 C -0.192 4.192 19 C 0.137 3.863 20 C -0.466 4.466 21 H 0.095 0.905 22 C -0.141 4.141 23 N -0.408 5.408 24 Si 0.726 3.274 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.199 1.199 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.218 -8.619 3.856 9.975 hybrid contribution 0.150 -0.545 -0.892 1.056 sum 3.368 -9.164 2.963 10.203 Atomic orbital electron populations 1.21728 0.93211 1.01958 1.03805 1.22661 0.95773 0.83388 1.00342 1.86203 1.18797 1.27067 1.88669 1.19090 0.82263 0.93093 0.99739 1.20780 0.94450 0.97636 1.06544 1.20562 0.94057 0.95997 1.01179 1.17935 0.93331 0.92869 1.03431 1.20830 0.93340 0.97281 1.01630 1.20683 0.99241 0.92735 1.01872 1.20810 0.93839 0.98259 1.02061 1.21045 0.94576 0.97226 0.96232 1.18903 0.91389 0.92710 0.98235 1.19066 0.90371 0.90387 0.99197 1.19164 1.06061 0.99929 0.93031 1.20437 0.97178 0.95508 0.94991 1.20038 1.09216 1.02005 0.96042 1.20331 0.99260 0.98267 0.93393 1.20943 1.01555 1.00274 0.96462 1.18505 0.87591 0.89828 0.90339 1.19448 1.37524 0.97726 0.91914 0.90464 1.25938 0.92247 0.94463 1.01492 1.69833 1.34262 1.04723 1.31985 0.86340 0.78633 0.80977 0.81408 1.18303 1.19583 1.19856 0.91335 0.91107 0.91622 0.92949 0.92745 0.86287 0.86302 0.86480 0.86863 0.86542 0.84887 0.89748 0.89898 0.89962 0.86509 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 37.16 0.38 -1.49 16 2 C 0.05 0.78 5.45 37.16 0.20 0.99 16 3 O -0.29 -5.88 9.58 -18.80 -0.18 -6.06 16 4 C 0.10 2.10 6.70 -38.62 -0.26 1.84 16 5 C -0.18 -2.96 8.90 -39.97 -0.36 -3.31 16 6 C -0.10 -1.61 9.70 -39.48 -0.38 -1.99 16 7 C -0.08 -1.36 5.74 -106.85 -0.61 -1.98 16 8 C -0.11 -1.74 9.77 -39.45 -0.39 -2.12 16 9 C -0.13 -1.92 9.95 -39.94 -0.40 -2.31 16 10 C -0.13 -2.22 9.96 -39.88 -0.40 -2.62 16 11 C -0.07 -1.47 9.46 -39.60 -0.37 -1.84 16 12 C -0.01 -0.25 5.90 -104.78 -0.62 -0.87 16 13 C 0.01 0.24 4.46 -102.52 -0.46 -0.22 16 14 C -0.18 -4.40 3.94 -102.37 -0.40 -4.80 16 15 C -0.06 -1.47 9.80 -39.23 -0.38 -1.85 16 16 C -0.25 -5.85 9.98 -39.51 -0.39 -6.24 16 17 C -0.09 -2.25 9.91 -40.05 -0.40 -2.64 16 18 C -0.17 -4.51 8.65 -39.29 -0.34 -4.85 16 19 C 0.14 3.71 5.74 -104.62 -0.60 3.11 16 20 C -0.44 -11.59 8.59 -37.99 -0.33 -11.91 16 21 H 0.08 2.08 7.38 -52.48 -0.39 1.70 16 22 C 0.08 1.94 5.15 -17.32 -0.09 1.85 16 23 N -0.78 -19.91 10.95 55.55 0.61 -19.30 16 24 Si 0.90 18.95 29.60 -169.99 -5.03 13.92 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.66 7.62 -51.93 -0.40 0.26 16 32 H 0.05 0.73 7.65 -51.93 -0.40 0.33 16 33 H 0.12 1.63 6.18 -52.49 -0.32 1.30 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.13 2.91 7.30 -52.48 -0.38 2.53 16 39 H 0.08 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.12 3.12 6.17 -52.49 -0.32 2.80 16 43 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -28.87 360.90 -11.33 -40.20 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.57 Total: 9.08 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: -6.59 Total: -43.29 kcal Atomic # 7 Polarization: -19.91 SS G_CDS: 0.61 Total: -19.30 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.18 Total: -6.06 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.87 -11.33 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241924829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.546 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds