Wall clock time and date at job start Tue Mar 31 2020 13:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46804 * 2 1 4 4 C 1.35700 * 117.00009 * 179.97438 * 3 2 1 5 5 C 1.39378 * 119.79790 * 359.72516 * 4 3 2 6 6 C 1.35974 * 121.78243 * 179.76997 * 5 4 3 7 7 C 1.40663 * 120.79481 * 0.48408 * 6 5 4 8 8 C 1.40498 * 121.24191 * 179.74322 * 7 6 5 9 9 C 1.36235 * 119.65656 * 180.02562 * 8 7 6 10 10 C 1.39220 * 120.99086 * 359.96051 * 9 8 7 11 11 C 1.36405 * 120.87914 * 0.03812 * 10 9 8 12 12 C 1.39956 * 119.62690 * 359.97438 * 11 10 9 13 13 C 1.39674 * 119.79899 * 180.02562 * 4 3 2 14 14 C 1.47233 * 120.72653 * 359.95210 * 13 4 3 15 15 C 1.39665 * 120.64386 * 89.72495 * 14 13 4 16 16 C 1.37753 * 119.91417 * 179.70104 * 15 14 13 17 17 C 1.38904 * 121.31241 * 0.60730 * 16 15 14 18 18 C 1.36242 * 121.35775 * 359.67781 * 17 16 15 19 19 C 1.40909 * 119.95854 * 0.02562 * 18 17 16 20 20 C 1.40687 * 120.62732 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00003 * 204.46955 * 20 19 18 22 22 C 1.40007 * 120.00439 * 24.47309 * 20 19 18 23 23 N 1.30815 * 119.99759 * 17.50655 * 22 20 19 24 24 Si 1.86804 * 120.00238 * 197.51321 * 22 20 19 25 25 H 1.48497 * 109.46969 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46848 * 119.99616 * 24 22 20 27 27 H 1.48495 * 109.47071 * 239.99488 * 24 22 20 28 28 H 1.08998 * 109.47135 * 60.00135 * 1 2 3 29 29 H 1.09005 * 109.46391 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47201 * 299.99619 * 1 2 3 31 31 H 1.08998 * 109.47135 * 119.99865 * 2 1 3 32 32 H 1.08994 * 109.47201 * 240.00380 * 2 1 3 33 33 H 1.07996 * 119.10751 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.59833 * 180.27443 * 6 5 4 35 35 H 1.08001 * 120.16949 * 0.02913 * 8 7 6 36 36 H 1.07994 * 119.50650 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.55964 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.18438 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.03822 * 0.02562 * 15 14 13 40 40 H 1.07990 * 119.33919 * 180.28046 * 16 15 14 41 41 H 1.07995 * 119.32193 * 179.68863 * 17 16 15 42 42 H 1.07996 * 120.02100 * 180.02562 * 18 17 16 43 43 H 0.97002 * 120.00354 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5252 0.0005 5 6 4.1968 0.4169 0.0069 6 6 5.5502 0.5484 0.0030 7 6 6.1502 1.8206 0.0026 8 6 7.5475 1.9673 0.0040 9 6 8.0943 3.2151 0.0041 10 6 7.2889 4.3507 0.0020 11 6 5.9289 4.2445 0.0005 12 6 5.3339 2.9777 0.0006 13 6 3.8809 2.8178 0.0011 14 6 2.9947 3.9935 0.0001 15 6 2.5602 4.5586 1.2012 16 6 1.7362 5.6623 1.1827 17 6 1.3118 6.2264 -0.0136 18 6 1.6987 5.7145 -1.2154 19 6 2.5462 4.5897 -1.2612 20 6 2.9549 4.0499 -2.4944 21 1 3.2510 3.0132 -2.5586 22 6 2.9779 4.8565 -3.6386 23 7 2.9586 6.1592 -3.5209 24 14 3.0359 4.0726 -5.3332 25 1 3.0505 2.5942 -5.1943 26 1 1.8400 4.4854 -6.1107 27 1 4.2638 4.5149 -6.0414 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.7651 -0.5730 0.0108 34 1 6.1719 -0.3347 0.0037 35 1 8.1848 1.0954 0.0050 36 1 9.1686 3.3251 0.0056 37 1 7.7469 5.3288 0.0016 38 1 5.3149 5.1329 -0.0007 39 1 2.8742 4.1338 2.1432 40 1 1.4095 6.0944 2.1169 41 1 0.6618 7.0886 0.0095 42 1 1.3561 6.1705 -2.1325 43 1 2.9741 6.7182 -4.3135 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241924829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:11 Heat of formation + Delta-G solvation = 6.240122 kcal Electronic energy + Delta-G solvation = -26333.730460 eV Core-core repulsion = 22886.671590 eV Total energy + Delta-G solvation = -3447.058870 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.31377 -39.69763 -38.95853 -36.32012 -35.58227 -34.02671 -32.38260 -31.47821 -31.21082 -30.46138 -28.91867 -27.05314 -24.92960 -24.14512 -23.29373 -22.86833 -22.64032 -21.01214 -19.23709 -19.14162 -18.05158 -17.52284 -17.15061 -16.88649 -16.47064 -16.15300 -15.65446 -15.29846 -15.14125 -14.72161 -14.49944 -14.42998 -14.28386 -13.92463 -13.74616 -13.62153 -13.44498 -13.28153 -13.14045 -12.92306 -12.79753 -12.53275 -12.23477 -12.15457 -12.07179 -11.92211 -11.71374 -11.51684 -11.34027 -11.12373 -11.05098 -10.31993 -9.32123 -9.22282 -9.11772 -8.66955 -8.28504 -6.28634 -0.28555 0.25306 0.90894 1.15108 1.21319 1.31026 1.45036 1.49470 2.15595 2.16449 2.45861 2.72755 3.27435 3.68892 3.79745 3.96369 4.08522 4.10239 4.13671 4.23561 4.34601 4.38174 4.43047 4.43366 4.53408 4.55541 4.62240 4.74800 4.83972 4.95155 5.03741 5.09944 5.12641 5.17323 5.22716 5.32122 5.35936 5.39501 5.43701 5.50845 5.67879 5.72059 5.73229 5.98404 6.10022 6.14220 6.20034 6.25330 6.37297 6.66901 6.76054 6.92420 7.09082 8.28028 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008113 B = 0.006687 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.409053 B = 4185.988976 C = 4991.829221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.330 6.330 4 C 0.102 3.898 5 C -0.188 4.188 6 C -0.078 4.078 7 C -0.099 4.099 8 C -0.097 4.097 9 C -0.131 4.131 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.029 4.029 13 C -0.052 4.052 14 C -0.163 4.163 15 C -0.082 4.082 16 C -0.251 4.251 17 C -0.103 4.103 18 C -0.200 4.200 19 C 0.108 3.892 20 C -0.462 4.462 21 H 0.061 0.939 22 C 0.038 3.962 23 N -0.814 5.814 24 Si 0.970 3.030 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.263 1.263 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 -12.129 4.184 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.057 3.943 5 C -0.206 4.206 6 C -0.095 4.095 7 C -0.099 4.099 8 C -0.114 4.114 9 C -0.149 4.149 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.029 4.029 13 C -0.053 4.053 14 C -0.165 4.165 15 C -0.100 4.100 16 C -0.271 4.271 17 C -0.122 4.122 18 C -0.219 4.219 19 C 0.106 3.894 20 C -0.491 4.491 21 H 0.079 0.921 22 C -0.178 4.178 23 N -0.439 5.439 24 Si 0.790 3.210 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.187 1.187 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.172 0.828 34 H 0.185 0.815 35 H 0.180 0.820 36 H 0.173 0.827 37 H 0.152 0.848 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.495 -11.768 4.049 13.604 hybrid contribution -0.479 0.370 -0.796 1.000 sum 5.016 -11.398 3.253 12.871 Atomic orbital electron populations 1.21778 0.92114 1.04011 1.02481 1.23044 0.96734 0.81365 1.01975 1.86159 1.19135 1.30600 1.88563 1.19345 0.82898 0.93485 0.98569 1.21092 0.94700 0.97942 1.06843 1.21118 0.94206 0.96721 0.97472 1.18341 0.94660 0.92722 1.04197 1.21347 0.92379 0.99041 0.98640 1.21110 1.01069 0.91778 1.00928 1.21130 0.92628 1.00375 0.99558 1.20863 0.95924 0.96132 1.00807 1.19066 0.91130 0.93989 0.98741 1.19153 0.91231 0.90614 1.04304 1.19485 1.04628 0.99977 0.92401 1.20747 0.97689 0.96053 0.95540 1.20375 1.08293 1.01542 0.96841 1.20570 0.99594 0.98966 0.93038 1.20937 1.02929 1.01319 0.96739 1.18870 0.88340 0.90620 0.91603 1.19415 1.39405 0.97179 0.93103 0.92129 1.26695 0.91514 0.94808 1.04737 1.69876 1.34908 1.05794 1.33327 0.85344 0.79291 0.79581 0.76743 1.18690 1.18330 1.18749 0.93206 0.87280 0.92396 0.90538 0.91562 0.82802 0.81484 0.81960 0.82692 0.84811 0.88871 0.88461 0.87169 0.87754 0.88061 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 10.28 71.98 0.74 -2.82 16 2 C 0.04 1.21 5.45 71.98 0.39 1.60 16 3 O -0.33 -13.56 9.58 -90.20 -0.86 -14.42 16 4 C 0.10 4.22 6.70 22.89 0.15 4.38 16 5 C -0.19 -5.92 8.90 22.02 0.20 -5.72 16 6 C -0.08 -2.21 9.70 22.34 0.22 -2.00 16 7 C -0.10 -3.37 5.74 -21.31 -0.12 -3.49 16 8 C -0.10 -2.56 9.77 22.35 0.22 -2.34 16 9 C -0.13 -3.49 9.95 22.04 0.22 -3.27 16 10 C -0.12 -3.97 9.96 22.08 0.22 -3.75 16 11 C -0.12 -5.07 9.46 22.26 0.21 -4.86 16 12 C -0.03 -1.25 5.90 -19.97 -0.12 -1.36 16 13 C -0.05 -2.45 4.46 -18.50 -0.08 -2.53 16 14 C -0.16 -8.54 3.94 -18.40 -0.07 -8.61 16 15 C -0.08 -4.05 9.80 22.50 0.22 -3.83 16 16 C -0.25 -12.00 9.98 22.31 0.22 -11.78 16 17 C -0.10 -5.19 9.91 21.96 0.22 -4.97 16 18 C -0.20 -11.17 8.65 22.46 0.19 -10.98 16 19 C 0.11 6.16 5.74 -19.86 -0.11 6.05 16 20 C -0.46 -26.20 8.59 23.30 0.20 -26.00 16 21 H 0.06 3.51 7.38 -2.91 -0.02 3.49 16 22 C 0.04 2.01 5.15 85.27 0.44 2.45 16 23 N -0.81 -43.66 10.95 21.84 0.24 -43.42 16 24 Si 0.97 40.12 29.60 68.60 2.03 42.15 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 27 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.74 7.62 -2.39 -0.02 1.72 16 32 H 0.07 1.67 7.65 -2.39 -0.02 1.65 16 33 H 0.15 3.63 6.18 -2.91 -0.02 3.62 16 34 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.09 4.57 7.30 -2.91 -0.02 4.54 16 39 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.11 4.56 8.06 -2.92 -0.02 4.53 16 41 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.10 5.84 6.17 -2.91 -0.02 5.82 16 43 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 Total: -1.00 -70.10 360.90 5.97 -64.13 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 1.01 Total: 35.40 kcal Atomic # 6 Polarization: -87.39 SS G_CDS: 3.55 Total: -83.84 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.24 Total: -43.42 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.86 Total: -14.42 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -70.10 5.97 -64.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241924829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.371 kcal (2) G-P(sol) polarization free energy of solvation -70.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds