Wall clock time and date at job start Tue Mar 31 2020 12:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47561 * 2 1 4 4 O 1.42906 * 109.47225 * 120.00262 * 2 1 3 5 5 C 1.50702 * 109.47387 * 239.99838 * 2 1 3 6 6 C 1.38343 * 119.86846 * 279.72868 * 5 2 1 7 7 C 1.37993 * 120.13013 * 179.76168 * 6 5 2 8 8 C 1.39449 * 119.86674 * 0.50978 * 7 6 5 9 9 C 1.48176 * 120.13003 * 179.76474 * 8 7 6 10 10 C 1.36674 * 120.33806 * 129.97765 * 9 8 7 11 11 C 1.41122 * 120.58954 * 180.02562 * 10 9 8 12 12 C 1.41216 * 119.49531 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99406 * 25.63576 * 12 11 10 14 14 C 1.39926 * 120.00474 * 205.64027 * 12 11 10 15 15 N 1.30830 * 119.99799 * 18.20175 * 14 12 11 16 16 Si 1.86796 * 120.00162 * 198.19766 * 14 12 11 17 17 H 1.48507 * 109.46897 * 60.00189 * 16 14 12 18 18 H 1.48503 * 109.47093 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47238 * 300.00022 * 16 14 12 20 20 C 1.39966 * 121.01902 * 359.97438 * 11 10 9 21 21 C 1.39887 * 120.11093 * 0.02562 * 20 11 10 22 22 C 1.40856 * 121.14284 * 180.02562 * 21 20 11 23 23 C 1.36192 * 119.60681 * 179.19051 * 22 21 20 24 24 C 1.39243 * 120.93976 * 0.79155 * 23 22 21 25 25 C 1.36543 * 120.98132 * 359.43755 * 24 23 22 26 26 C 1.39803 * 119.73375 * 0.02562 * 25 24 23 27 27 C 1.39447 * 119.73611 * 359.74226 * 8 7 6 28 28 C 1.37985 * 119.86741 * 0.02562 * 27 8 7 29 29 H 1.08994 * 109.47627 * 299.99715 * 1 2 3 30 30 H 1.09002 * 109.47089 * 60.00371 * 1 2 3 31 31 H 1.09004 * 109.47448 * 179.97438 * 1 2 3 32 32 H 0.96700 * 114.00135 * 59.99588 * 4 2 1 33 33 H 1.07992 * 119.93329 * 359.97438 * 6 5 2 34 34 H 1.08000 * 120.06470 * 180.24820 * 7 6 5 35 35 H 1.08004 * 119.70943 * 0.02665 * 10 9 8 36 36 H 0.97007 * 120.00238 * 180.02562 * 15 14 12 37 37 H 1.08001 * 119.94045 * 180.02562 * 20 11 10 38 38 H 1.08008 * 120.19344 * 359.97419 * 22 21 20 39 39 H 1.08001 * 119.53061 * 180.22386 * 23 22 21 40 40 H 1.08001 * 119.50877 * 179.46524 * 24 23 22 41 41 H 1.08003 * 120.12841 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.06827 * 180.02562 * 27 8 7 43 43 H 1.08000 * 119.93844 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0323 -0.7104 -1.2304 6 6 2.0709 -2.0930 -1.2602 7 6 2.5253 -2.7492 -2.3859 8 6 2.9561 -2.0156 -3.4909 9 6 3.4501 -2.7142 -4.7007 10 6 2.9651 -2.3837 -5.9350 11 6 3.4314 -3.0459 -7.0907 12 6 2.9147 -2.6857 -8.3546 13 1 2.5149 -1.6947 -8.5120 14 6 2.9206 -3.6124 -9.4030 15 7 3.0604 -4.8879 -9.1477 16 14 2.7289 -3.0284 -11.1669 17 1 3.8368 -2.0986 -11.5037 18 1 2.7685 -4.1970 -12.0823 19 1 1.4296 -2.3252 -11.3171 20 6 4.3989 -4.0536 -7.0037 21 6 4.9200 -4.4205 -5.7585 22 6 5.8946 -5.4312 -5.6458 23 6 6.3926 -5.7520 -4.4194 24 6 5.9401 -5.1063 -3.2717 25 6 4.9930 -4.1254 -3.3442 26 6 4.4661 -3.7608 -4.5868 27 6 2.9198 -0.6222 -3.4529 28 6 2.4588 0.0227 -2.3234 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7209 -1.5953 1.2329 33 1 1.7415 -2.6599 -0.4021 34 1 2.5512 -3.8286 -2.4095 35 1 2.2183 -1.6089 -6.0268 36 1 3.0649 -5.5304 -9.8745 37 1 4.7436 -4.5487 -7.8995 38 1 6.2542 -5.9399 -6.5281 39 1 7.1425 -6.5246 -4.3349 40 1 6.3448 -5.3851 -2.3100 41 1 4.6523 -3.6333 -2.4452 42 1 3.2518 -0.0487 -4.3057 43 1 2.4298 1.1019 -2.2929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242651775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:33 Heat of formation + Delta-G solvation = -5.001613 kcal Electronic energy + Delta-G solvation = -25082.439321 eV Core-core repulsion = 21634.892972 eV Total energy + Delta-G solvation = -3447.546349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.76494 -38.70915 -36.98910 -35.71361 -33.72800 -32.33808 -30.97000 -30.80123 -29.64169 -29.17627 -27.51349 -25.35932 -23.91824 -22.55136 -22.14528 -21.22971 -21.06442 -19.87750 -17.78791 -17.35915 -16.15260 -16.11717 -15.74124 -15.19239 -15.08193 -14.81761 -14.34088 -14.04561 -13.79222 -13.48808 -13.22822 -13.17833 -12.98180 -12.52437 -12.39245 -12.21751 -12.09463 -11.93804 -11.86836 -11.53337 -11.23514 -11.11486 -10.96312 -10.90184 -10.69784 -10.51652 -10.26251 -10.09416 -9.69448 -9.58817 -9.20986 -8.79303 -8.71295 -8.25341 -7.54024 -6.92154 -6.70870 -4.44439 1.25285 1.61677 1.85091 2.26243 2.93841 2.99018 3.02049 3.21006 3.80673 3.91494 4.02588 4.33198 4.59813 4.75418 4.88150 4.99261 5.11227 5.17686 5.27321 5.49373 5.53604 5.60689 5.68746 5.71752 5.73979 5.85793 5.88625 5.94405 6.13361 6.16642 6.25733 6.35594 6.52689 6.59122 6.64646 6.67288 6.79604 6.88779 6.96063 7.02064 7.17204 7.25925 7.36311 7.41826 7.44227 7.49691 7.64808 7.84847 8.02351 8.10782 8.45918 8.67763 8.74590 10.02068 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.003694 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.490215 B = 7577.358812 C = 9348.552166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.146 3.854 3 H 0.103 0.897 4 O -0.560 6.560 5 C -0.134 4.134 6 C -0.114 4.114 7 C -0.108 4.108 8 C -0.010 4.010 9 C -0.058 4.058 10 C -0.123 4.123 11 C 0.100 3.900 12 C -0.450 4.450 13 H 0.080 0.920 14 C 0.074 3.926 15 N -0.778 5.778 16 Si 0.909 3.091 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.203 4.203 21 C 0.001 3.999 22 C -0.137 4.137 23 C -0.119 4.119 24 C -0.190 4.190 25 C -0.084 4.084 26 C -0.117 4.117 27 C -0.110 4.110 28 C -0.110 4.110 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.373 0.627 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.284 0.716 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 4.812 10.728 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 H 0.121 0.879 4 O -0.366 6.366 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.126 4.126 8 C -0.010 4.010 9 C -0.058 4.058 10 C -0.142 4.142 11 C 0.097 3.903 12 C -0.478 4.478 13 H 0.098 0.902 14 C -0.146 4.146 15 N -0.401 5.401 16 Si 0.733 3.267 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.223 4.223 21 C 0.001 3.999 22 C -0.156 4.156 23 C -0.137 4.137 24 C -0.208 4.208 25 C -0.102 4.102 26 C -0.118 4.118 27 C -0.128 4.128 28 C -0.128 4.128 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.221 0.779 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.143 0.857 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.311 5.160 10.709 12.110 hybrid contribution -0.417 -0.502 -1.102 1.281 sum -2.728 4.658 9.607 11.019 Atomic orbital electron populations 1.22485 0.95710 1.02852 1.02673 1.20757 0.92785 0.95799 0.81902 0.87890 1.86595 1.77445 1.29154 1.43426 1.20429 1.02063 0.94312 0.96612 1.20674 1.00989 0.93517 0.98003 1.21300 0.98577 1.00110 0.92589 1.18978 0.95833 0.92719 0.93486 1.19192 0.98007 0.97179 0.91455 1.21152 1.00184 1.01312 0.91556 1.17381 0.89893 0.91273 0.91741 1.19619 1.34527 0.99353 0.94322 0.90185 1.25920 0.92682 0.94272 1.01679 1.69826 1.33353 1.01939 1.35018 0.86346 0.80068 0.79385 0.80910 1.18646 1.20174 1.18895 1.21187 1.01263 1.04987 0.94899 1.17922 0.94738 0.93958 0.93320 1.20915 0.98968 0.98904 0.96779 1.20499 1.00151 0.99955 0.93093 1.20353 1.02064 1.01131 0.97268 1.20787 0.96330 0.96724 0.96315 1.18457 1.00999 0.99469 0.92878 1.21297 0.99673 0.93726 0.98065 1.20815 0.99539 0.99302 0.93175 0.91763 0.91305 0.92130 0.77862 0.86714 0.85668 0.87931 0.90485 0.86059 0.87305 0.88125 0.88216 0.87405 0.85729 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.51 37.15 0.35 -1.21 16 2 C 0.15 1.52 3.82 -27.89 -0.11 1.41 16 3 H 0.10 1.01 8.00 -51.93 -0.42 0.59 16 4 O -0.56 -6.12 13.19 -35.23 -0.46 -6.59 16 5 C -0.13 -1.69 4.98 -104.54 -0.52 -2.21 16 6 C -0.11 -1.49 9.31 -39.63 -0.37 -1.86 16 7 C -0.11 -1.71 7.68 -39.22 -0.30 -2.01 16 8 C -0.01 -0.18 5.08 -104.91 -0.53 -0.71 16 9 C -0.06 -1.24 5.59 -103.14 -0.58 -1.81 16 10 C -0.12 -2.80 9.10 -39.05 -0.36 -3.16 16 11 C 0.10 2.51 5.55 -107.03 -0.59 1.91 16 12 C -0.45 -11.20 8.99 -37.82 -0.34 -11.54 16 13 H 0.08 1.88 7.91 -52.48 -0.42 1.47 16 14 C 0.07 1.77 5.09 -17.35 -0.09 1.68 16 15 N -0.78 -19.28 11.00 55.55 0.61 -18.67 16 16 Si 0.91 17.74 29.60 -169.99 -5.03 12.71 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 18 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 C -0.20 -5.15 8.39 -38.32 -0.32 -5.47 16 21 C 0.00 0.02 5.74 -106.88 -0.61 -0.59 16 22 C -0.14 -2.91 9.78 -39.33 -0.38 -3.30 16 23 C -0.12 -2.25 9.95 -39.94 -0.40 -2.65 16 24 C -0.19 -3.53 9.96 -39.82 -0.40 -3.92 16 25 C -0.08 -1.65 8.69 -39.61 -0.34 -1.99 16 26 C -0.12 -2.61 5.88 -104.66 -0.62 -3.22 16 27 C -0.11 -1.73 9.49 -39.22 -0.37 -2.11 16 28 C -0.11 -1.47 9.65 -39.63 -0.38 -1.85 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.37 2.93 7.48 45.56 0.34 3.27 16 33 H 0.11 1.16 6.76 -52.49 -0.35 0.81 16 34 H 0.13 2.00 7.34 -52.49 -0.39 1.61 16 35 H 0.10 2.15 8.01 -52.48 -0.42 1.73 16 36 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 37 H 0.12 3.19 6.15 -52.49 -0.32 2.87 16 38 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 39 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.11 1.93 5.72 -52.48 -0.30 1.63 16 42 H 0.12 1.90 8.04 -52.49 -0.42 1.48 16 43 H 0.12 1.28 8.03 -52.49 -0.42 0.86 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -27.68 357.66 -11.54 -39.22 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -4.79 Total: 12.55 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: -7.26 Total: -44.61 kcal Atomic # 7 Polarization: -19.28 SS G_CDS: 0.61 Total: -18.67 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.46 Total: -6.59 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.68 -11.54 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242651775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.218 kcal (2) G-P(sol) polarization free energy of solvation -27.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds