Wall clock time and date at job start Tue Mar 31 2020 12:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47561 * 2 1 4 4 O 1.42906 * 109.47225 * 120.00262 * 2 1 3 5 5 C 1.50702 * 109.47387 * 239.99838 * 2 1 3 6 6 C 1.38343 * 119.86846 * 279.72868 * 5 2 1 7 7 C 1.37993 * 120.13013 * 179.76168 * 6 5 2 8 8 C 1.39449 * 119.86674 * 0.50978 * 7 6 5 9 9 C 1.48176 * 120.13003 * 179.76474 * 8 7 6 10 10 C 1.36674 * 120.33806 * 129.97765 * 9 8 7 11 11 C 1.41122 * 120.58954 * 180.02562 * 10 9 8 12 12 C 1.41216 * 119.49531 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99406 * 25.63576 * 12 11 10 14 14 C 1.39926 * 120.00474 * 205.64027 * 12 11 10 15 15 N 1.30830 * 119.99799 * 18.20175 * 14 12 11 16 16 Si 1.86796 * 120.00162 * 198.19766 * 14 12 11 17 17 H 1.48507 * 109.46897 * 60.00189 * 16 14 12 18 18 H 1.48503 * 109.47093 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47238 * 300.00022 * 16 14 12 20 20 C 1.39966 * 121.01902 * 359.97438 * 11 10 9 21 21 C 1.39887 * 120.11093 * 0.02562 * 20 11 10 22 22 C 1.40856 * 121.14284 * 180.02562 * 21 20 11 23 23 C 1.36192 * 119.60681 * 179.19051 * 22 21 20 24 24 C 1.39243 * 120.93976 * 0.79155 * 23 22 21 25 25 C 1.36543 * 120.98132 * 359.43755 * 24 23 22 26 26 C 1.39803 * 119.73375 * 0.02562 * 25 24 23 27 27 C 1.39447 * 119.73611 * 359.74226 * 8 7 6 28 28 C 1.37985 * 119.86741 * 0.02562 * 27 8 7 29 29 H 1.08994 * 109.47627 * 299.99715 * 1 2 3 30 30 H 1.09002 * 109.47089 * 60.00371 * 1 2 3 31 31 H 1.09004 * 109.47448 * 179.97438 * 1 2 3 32 32 H 0.96700 * 114.00135 * 59.99588 * 4 2 1 33 33 H 1.07992 * 119.93329 * 359.97438 * 6 5 2 34 34 H 1.08000 * 120.06470 * 180.24820 * 7 6 5 35 35 H 1.08004 * 119.70943 * 0.02665 * 10 9 8 36 36 H 0.97007 * 120.00238 * 180.02562 * 15 14 12 37 37 H 1.08001 * 119.94045 * 180.02562 * 20 11 10 38 38 H 1.08008 * 120.19344 * 359.97419 * 22 21 20 39 39 H 1.08001 * 119.53061 * 180.22386 * 23 22 21 40 40 H 1.08001 * 119.50877 * 179.46524 * 24 23 22 41 41 H 1.08003 * 120.12841 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.06827 * 180.02562 * 27 8 7 43 43 H 1.08000 * 119.93844 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0323 -0.7104 -1.2304 6 6 2.0709 -2.0930 -1.2602 7 6 2.5253 -2.7492 -2.3859 8 6 2.9561 -2.0156 -3.4909 9 6 3.4501 -2.7142 -4.7007 10 6 2.9651 -2.3837 -5.9350 11 6 3.4314 -3.0459 -7.0907 12 6 2.9147 -2.6857 -8.3546 13 1 2.5149 -1.6947 -8.5120 14 6 2.9206 -3.6124 -9.4030 15 7 3.0604 -4.8879 -9.1477 16 14 2.7289 -3.0284 -11.1669 17 1 3.8368 -2.0986 -11.5037 18 1 2.7685 -4.1970 -12.0823 19 1 1.4296 -2.3252 -11.3171 20 6 4.3989 -4.0536 -7.0037 21 6 4.9200 -4.4205 -5.7585 22 6 5.8946 -5.4312 -5.6458 23 6 6.3926 -5.7520 -4.4194 24 6 5.9401 -5.1063 -3.2717 25 6 4.9930 -4.1254 -3.3442 26 6 4.4661 -3.7608 -4.5868 27 6 2.9198 -0.6222 -3.4529 28 6 2.4588 0.0227 -2.3234 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7209 -1.5953 1.2329 33 1 1.7415 -2.6599 -0.4021 34 1 2.5512 -3.8286 -2.4095 35 1 2.2183 -1.6089 -6.0268 36 1 3.0649 -5.5304 -9.8745 37 1 4.7436 -4.5487 -7.8995 38 1 6.2542 -5.9399 -6.5281 39 1 7.1425 -6.5246 -4.3349 40 1 6.3448 -5.3851 -2.3100 41 1 4.6523 -3.6333 -2.4452 42 1 3.2518 -0.0487 -4.3057 43 1 2.4298 1.1019 -2.2929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242651775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:32 Heat of formation + Delta-G solvation = -17.600022 kcal Electronic energy + Delta-G solvation = -25082.985629 eV Core-core repulsion = 21634.892972 eV Total energy + Delta-G solvation = -3448.092657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05602 -40.10200 -38.00597 -37.38016 -35.31634 -33.76494 -32.16576 -31.96534 -31.31779 -30.47216 -28.92070 -27.10180 -25.04282 -23.82491 -23.63966 -22.72199 -22.39610 -21.31714 -19.38853 -18.37596 -17.82947 -17.67925 -16.79092 -16.68404 -16.36067 -16.02453 -15.82237 -15.11571 -15.04550 -14.90090 -14.53655 -14.34849 -14.18744 -14.13401 -13.95711 -13.64213 -13.40974 -13.17451 -13.00493 -12.82547 -12.78889 -12.56075 -12.50849 -12.14023 -12.04657 -11.78394 -11.74230 -11.42162 -11.28589 -11.03220 -10.91855 -10.43305 -9.85216 -9.54116 -9.27108 -8.69650 -8.38213 -6.32890 -0.17828 0.43398 0.48324 0.57750 1.34211 1.38935 1.47858 1.56846 2.15652 2.28651 2.80115 3.01662 3.57363 3.66109 3.73550 3.84958 3.95485 4.05599 4.11468 4.25890 4.30704 4.31522 4.36152 4.52021 4.60576 4.64593 4.73603 4.83455 4.88385 4.92207 4.98757 5.01811 5.13377 5.16083 5.18433 5.27519 5.29937 5.39756 5.55605 5.61537 5.64069 5.71800 5.75601 5.84828 5.97373 6.04191 6.05595 6.23572 6.42667 6.63292 6.80329 6.84350 6.93212 8.27037 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.003694 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.490215 B = 7577.358812 C = 9348.552166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.150 3.850 3 H 0.112 0.888 4 O -0.572 6.572 5 C -0.123 4.123 6 C -0.108 4.108 7 C -0.115 4.115 8 C -0.043 4.043 9 C -0.043 4.043 10 C -0.152 4.152 11 C 0.077 3.923 12 C -0.488 4.488 13 H 0.081 0.919 14 C 0.034 3.966 15 N -0.815 5.815 16 Si 0.982 3.018 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.256 1.256 20 C -0.236 4.236 21 C -0.022 4.022 22 C -0.163 4.163 23 C -0.106 4.106 24 C -0.180 4.180 25 C -0.086 4.086 26 C -0.139 4.139 27 C -0.120 4.120 28 C -0.108 4.108 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.387 0.613 33 H 0.150 0.850 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.289 0.711 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 5.442 13.935 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.091 3.909 3 H 0.130 0.870 4 O -0.380 6.380 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.133 4.133 8 C -0.043 4.043 9 C -0.044 4.044 10 C -0.171 4.171 11 C 0.075 3.925 12 C -0.516 4.516 13 H 0.100 0.900 14 C -0.182 4.182 15 N -0.439 5.439 16 Si 0.802 3.198 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.180 1.180 20 C -0.256 4.256 21 C -0.022 4.022 22 C -0.181 4.181 23 C -0.124 4.124 24 C -0.198 4.198 25 C -0.104 4.104 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.126 4.126 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.237 0.763 33 H 0.167 0.833 34 H 0.138 0.862 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.146 0.854 42 H 0.137 0.863 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.427 5.782 13.938 15.283 hybrid contribution -0.318 -0.719 -1.766 1.933 sum -2.745 5.062 12.172 13.465 Atomic orbital electron populations 1.22448 0.94267 1.03312 1.03314 1.20809 0.93755 0.95793 0.80508 0.87030 1.86586 1.77765 1.30377 1.43264 1.20833 1.00025 0.94310 0.97144 1.21006 0.99596 0.94073 0.97939 1.21298 0.99217 0.99890 0.92895 1.18901 0.98751 0.93622 0.93038 1.19557 0.96385 0.95988 0.92426 1.21211 1.01553 1.02434 0.91885 1.17715 0.90109 0.91754 0.92920 1.19889 1.36377 0.99937 0.95424 0.90042 1.26781 0.91744 0.94035 1.05630 1.69907 1.34549 1.03090 1.36396 0.85256 0.80138 0.78965 0.75438 1.18499 1.19241 1.18013 1.21077 1.03046 1.06401 0.95090 1.18227 0.95614 0.95053 0.93315 1.21077 0.99473 0.99213 0.98366 1.20935 0.99642 0.99787 0.92001 1.20868 1.00572 0.99519 0.98869 1.21034 0.96394 0.97127 0.95831 1.18838 1.01547 0.99961 0.93607 1.21345 1.00311 0.93006 0.99097 1.21122 0.98350 1.00857 0.92286 0.90580 0.91265 0.91811 0.76337 0.83289 0.86223 0.87408 0.90033 0.88313 0.87167 0.84338 0.84167 0.85370 0.86307 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 9.51 71.98 0.68 -1.71 16 2 C 0.15 2.51 3.82 29.85 0.11 2.63 16 3 H 0.11 1.72 8.00 -2.39 -0.02 1.70 16 4 O -0.57 -10.15 13.19 -148.98 -1.96 -12.11 16 5 C -0.12 -2.69 4.98 -19.81 -0.10 -2.78 16 6 C -0.11 -2.50 9.31 22.24 0.21 -2.29 16 7 C -0.12 -3.49 7.68 22.50 0.17 -3.32 16 8 C -0.04 -1.54 5.08 -20.05 -0.10 -1.64 16 9 C -0.04 -1.93 5.59 -18.90 -0.11 -2.03 16 10 C -0.15 -7.43 9.10 22.61 0.21 -7.22 16 11 C 0.08 4.22 5.55 -21.42 -0.12 4.10 16 12 C -0.49 -26.13 8.99 23.41 0.21 -25.92 16 13 H 0.08 4.13 7.91 -2.91 -0.02 4.10 16 14 C 0.03 1.72 5.09 85.25 0.43 2.16 16 15 N -0.81 -43.15 11.00 21.82 0.24 -42.91 16 16 Si 0.98 37.96 29.60 68.60 2.03 39.99 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 19 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 20 C -0.24 -12.97 8.39 23.09 0.19 -12.78 16 21 C -0.02 -1.09 5.74 -21.33 -0.12 -1.21 16 22 C -0.16 -7.06 9.78 22.43 0.22 -6.84 16 23 C -0.11 -3.78 9.95 22.03 0.22 -3.56 16 24 C -0.18 -6.15 9.96 22.11 0.22 -5.93 16 25 C -0.09 -3.28 8.69 22.25 0.19 -3.08 16 26 C -0.14 -6.34 5.88 -19.89 -0.12 -6.46 16 27 C -0.12 -3.74 9.49 22.50 0.21 -3.52 16 28 C -0.11 -2.63 9.65 22.23 0.21 -2.42 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.39 4.37 7.48 -74.06 -0.55 3.81 16 33 H 0.15 2.36 6.76 -2.91 -0.02 2.34 16 34 H 0.12 3.70 7.34 -2.91 -0.02 3.67 16 35 H 0.11 4.91 8.01 -2.91 -0.02 4.89 16 36 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 37 H 0.10 5.71 6.15 -2.91 -0.02 5.70 16 38 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 39 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 40 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.13 4.32 5.72 -2.91 -0.02 4.30 16 42 H 0.12 3.74 8.04 -2.91 -0.02 3.72 16 43 H 0.15 2.70 8.03 -2.91 -0.02 2.68 16 Total: -1.00 -64.87 357.66 3.63 -61.25 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.48 Total: 37.63 kcal Atomic # 6 Polarization: -86.68 SS G_CDS: 2.84 Total: -83.84 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.24 Total: -42.91 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -1.96 Total: -12.11 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -64.87 3.63 -61.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242651775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.646 kcal (2) G-P(sol) polarization free energy of solvation -64.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds