Wall clock time and date at job start Tue Mar 31 2020 12:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 112.77936 * 2 1 4 4 C 1.53754 * 113.55215 * 130.85090 * 2 1 3 5 5 C 1.53503 * 83.25653 * 140.98777 * 4 2 1 6 6 N 1.47062 * 87.98315 * 333.76393 * 5 4 2 7 7 C 1.34776 * 136.05655 * 207.07572 * 6 5 4 8 8 O 1.21347 * 120.00169 * 179.97438 * 7 6 5 9 9 C 1.49451 * 119.99692 * 0.02562 * 7 6 5 10 10 O 1.21344 * 120.00312 * 359.97438 * 9 7 6 11 11 N 1.34783 * 120.00068 * 179.97438 * 9 7 6 12 12 C 1.46503 * 120.00340 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.46935 * 180.02562 * 12 11 9 14 14 C 1.38323 * 119.96578 * 90.00238 * 13 12 11 15 15 C 1.38278 * 120.13283 * 180.27073 * 14 13 12 16 16 C 1.38115 * 120.07300 * 359.44684 * 15 14 13 17 17 C 1.38858 * 119.92981 * 0.52730 * 16 15 14 18 18 O 1.35756 * 120.06979 * 179.76669 * 17 16 15 19 19 C 1.34824 * 117.00195 * 354.44124 * 18 17 16 20 20 H 1.08008 * 119.99737 * 5.05937 * 19 18 17 21 21 C 1.38644 * 120.00377 * 185.05149 * 19 18 17 22 22 N 1.31561 * 120.00006 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00251 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46890 * 90.00606 * 23 21 19 25 25 H 1.48498 * 109.46962 * 209.99892 * 23 21 19 26 26 H 1.48497 * 109.47341 * 330.00239 * 23 21 19 27 27 C 1.38082 * 119.96014 * 269.97357 * 13 12 11 28 28 H 1.09003 * 109.46963 * 171.27876 * 1 2 3 29 29 H 1.08998 * 109.47376 * 291.27893 * 1 2 3 30 30 H 1.08999 * 109.47016 * 51.28324 * 1 2 3 31 31 H 1.08995 * 114.39604 * 27.43335 * 4 2 1 32 32 H 1.09001 * 114.09108 * 254.52737 * 4 2 1 33 33 H 1.08994 * 113.46680 * 218.98399 * 5 4 2 34 34 H 1.09003 * 113.46419 * 88.54516 * 5 4 2 35 35 H 0.96999 * 119.99716 * 0.02562 * 11 9 7 36 36 H 1.08994 * 109.46758 * 59.99734 * 12 11 9 37 37 H 1.09006 * 109.46690 * 300.00215 * 12 11 9 38 38 H 1.07992 * 119.93347 * 359.97438 * 14 13 12 39 39 H 1.08005 * 119.96025 * 179.70065 * 15 14 13 40 40 H 1.08003 * 120.03674 * 180.27179 * 16 15 14 41 41 H 0.96993 * 120.00383 * 179.97438 * 22 21 19 42 42 H 1.07991 * 120.03992 * 0.02711 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0050 0.0000 4 6 2.1444 -0.9219 1.0661 5 6 3.1581 -1.2301 -0.0445 6 7 2.1157 -0.8812 -1.0214 7 6 1.8274 -1.2167 -2.2945 8 8 0.8571 -0.7374 -2.8434 9 6 2.7021 -2.1799 -3.0298 10 8 3.6721 -2.6595 -2.4807 11 7 2.4136 -2.5158 -4.3028 12 6 3.2707 -3.4604 -5.0234 13 6 2.7337 -3.6637 -6.4167 14 6 3.1609 -2.8467 -7.4478 15 6 2.6663 -3.0266 -8.7265 16 6 1.7523 -4.0305 -8.9801 17 6 1.3219 -4.8527 -7.9473 18 8 0.4200 -5.8374 -8.1924 19 6 -0.1052 -5.8914 -9.4330 20 1 0.2553 -5.2237 -10.2016 21 6 -1.1079 -6.8042 -9.7222 22 7 -1.5473 -7.6173 -8.7859 23 14 -1.8351 -6.8795 -11.4413 24 1 -1.0619 -7.8443 -12.2639 25 1 -3.2507 -7.3206 -11.3610 26 1 -1.7706 -5.5336 -12.0655 27 6 1.8162 -4.6659 -6.6627 28 1 -0.3633 -1.0158 -0.1558 29 1 -0.3634 0.3729 0.9576 30 1 -0.3633 0.6428 -0.8018 31 1 1.5166 -1.7680 1.3455 32 1 2.5655 -0.3939 1.9217 33 1 3.4552 -2.2781 -0.0824 34 1 4.0094 -0.5494 -0.0563 35 1 1.6384 -2.1321 -4.7418 36 1 3.2841 -4.4141 -4.4959 37 1 4.2838 -3.0619 -5.0793 38 1 3.8786 -2.0636 -7.2529 39 1 2.9981 -2.3839 -9.5286 40 1 1.3696 -4.1733 -9.9800 41 1 -2.2491 -8.2556 -8.9881 42 1 1.4831 -5.3035 -5.8573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262105475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:21 Heat of formation + Delta-G solvation = -28.967717 kcal Electronic energy + Delta-G solvation = -25357.286502 eV Core-core repulsion = 21497.851642 eV Total energy + Delta-G solvation = -3859.434860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05891 -39.61884 -39.00299 -37.83548 -36.84598 -34.66200 -32.34378 -31.12909 -30.88977 -29.72637 -29.18610 -26.60883 -25.33651 -24.14871 -23.57433 -21.77695 -21.49964 -20.84935 -19.55413 -18.26089 -17.56924 -17.16084 -16.96425 -16.22923 -15.74072 -15.43396 -15.12224 -15.00539 -14.64897 -14.41063 -14.04476 -13.82629 -13.74061 -13.66004 -13.39991 -12.93402 -12.73667 -12.45135 -12.29247 -12.21111 -12.04130 -11.97323 -11.69123 -11.64370 -11.37987 -10.95956 -10.84556 -10.79721 -10.72138 -10.48164 -9.60098 -9.41765 -9.21690 -9.08299 -8.89803 -8.27366 -7.34502 -6.49593 -4.09138 1.38572 1.74418 2.19961 2.28715 3.09883 3.11165 3.16071 3.16809 3.36952 3.91975 3.92929 4.29765 4.52310 4.55391 4.60734 4.79555 4.87003 5.00254 5.01920 5.06094 5.20350 5.24689 5.42867 5.48718 5.51435 5.55943 5.67175 5.76043 5.77532 5.84431 5.97424 6.05173 6.21779 6.24496 6.52493 6.79282 6.97338 7.11768 7.14588 7.25620 7.27923 7.34291 7.64516 7.68937 7.94367 7.97357 8.95657 9.63873 10.68149 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.002396 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.469449 B =11683.511823 C =12368.571076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.131 3.869 3 H 0.097 0.903 4 C -0.155 4.155 5 C 0.105 3.895 6 N -0.622 5.622 7 C 0.535 3.465 8 O -0.516 6.516 9 C 0.508 3.492 10 O -0.525 6.525 11 N -0.688 5.688 12 C 0.167 3.833 13 C -0.077 4.077 14 C -0.193 4.193 15 C -0.076 4.076 16 C -0.223 4.223 17 C 0.150 3.850 18 O -0.175 6.175 19 C -0.393 4.393 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.168 4.168 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.416 0.584 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.271 0.729 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 13.900 16.007 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.029 3.971 3 H 0.115 0.885 4 C -0.193 4.193 5 C -0.018 4.018 6 N -0.360 5.360 7 C 0.319 3.681 8 O -0.391 6.391 9 C 0.288 3.712 10 O -0.402 6.402 11 N -0.341 5.341 12 C 0.045 3.955 13 C -0.078 4.078 14 C -0.213 4.213 15 C -0.094 4.094 16 C -0.243 4.243 17 C 0.096 3.904 18 O -0.079 6.079 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.188 4.188 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.252 0.748 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.966 13.353 16.009 22.317 hybrid contribution -0.659 0.172 -1.313 1.479 sum 7.307 13.525 14.697 21.268 Atomic orbital electron populations 1.21946 0.93575 1.03363 1.02552 1.22855 0.95762 0.94974 0.83530 0.88490 1.23611 0.98740 1.00470 0.96455 1.23033 0.91789 1.03324 0.83619 1.49560 1.30590 1.45264 1.10539 1.19804 0.85546 0.82660 0.80110 1.90785 1.28197 1.54235 1.65852 1.19973 0.85552 0.82744 0.82914 1.90720 1.28194 1.53873 1.67364 1.45996 1.30926 1.44991 1.12157 1.20300 0.93263 0.92853 0.89045 1.19197 0.98200 0.96930 0.93448 1.20474 1.05251 1.02429 0.93125 1.20744 0.95909 0.96682 0.96057 1.21255 1.03255 0.99678 1.00117 1.19313 0.90077 0.88139 0.92848 1.83982 1.48540 1.42057 1.33283 1.21328 1.18957 1.21373 0.85280 0.89007 1.25302 0.95882 0.95409 0.99876 1.70035 1.27020 1.19556 1.32916 0.85702 0.78461 0.79036 0.80183 1.19833 1.20204 1.19163 1.20084 1.01988 1.01602 0.95142 0.91861 0.91063 0.91468 0.88418 0.88868 0.88937 0.89380 0.74760 0.90231 0.90337 0.87440 0.87187 0.85383 0.91926 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.26 37.16 0.34 -0.93 16 2 C 0.13 1.00 4.68 -72.26 -0.34 0.66 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.15 -0.83 8.04 -26.08 -0.21 -1.04 16 5 C 0.10 0.82 7.61 -8.51 -0.06 0.75 16 6 N -0.62 -6.76 3.56 -177.81 -0.63 -7.40 16 7 C 0.53 7.48 8.04 -11.58 -0.09 7.38 16 8 O -0.52 -8.35 16.68 5.50 0.09 -8.26 16 9 C 0.51 7.38 7.89 -11.58 -0.09 7.29 16 10 O -0.52 -8.16 15.20 5.50 0.08 -8.07 16 11 N -0.69 -9.93 5.54 -61.91 -0.34 -10.28 16 12 C 0.17 2.44 5.80 -5.19 -0.03 2.41 16 13 C -0.08 -1.31 5.25 -104.65 -0.55 -1.86 16 14 C -0.19 -3.19 9.70 -39.54 -0.38 -3.58 16 15 C -0.08 -1.34 10.04 -39.61 -0.40 -1.73 16 16 C -0.22 -4.71 9.17 -39.40 -0.36 -5.07 16 17 C 0.15 3.53 6.65 -39.11 -0.26 3.27 16 18 O -0.18 -4.92 9.76 0.05 0.00 -4.92 16 19 C -0.39 -10.83 9.49 30.88 0.29 -10.54 16 20 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 23 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.82 7.39 -51.93 -0.38 0.44 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.42 6.08 7.94 -40.82 -0.32 5.76 16 36 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.13 2.70 5.64 -52.48 -0.30 2.40 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -32.68 363.83 -7.68 -40.36 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.48 Total: 7.92 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.62 Total: -5.81 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.22 Total: -41.99 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.18 Total: -21.26 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.68 -7.68 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262105475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.396 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds