Wall clock time and date at job start Tue Mar 31 2020 12:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 112.77936 * 2 1 4 4 C 1.53754 * 113.55215 * 130.85090 * 2 1 3 5 5 C 1.53503 * 83.25653 * 140.98777 * 4 2 1 6 6 N 1.47062 * 87.98315 * 333.76393 * 5 4 2 7 7 C 1.34776 * 136.05655 * 207.07572 * 6 5 4 8 8 O 1.21347 * 120.00169 * 179.97438 * 7 6 5 9 9 C 1.49451 * 119.99692 * 0.02562 * 7 6 5 10 10 O 1.21344 * 120.00312 * 359.97438 * 9 7 6 11 11 N 1.34783 * 120.00068 * 179.97438 * 9 7 6 12 12 C 1.46503 * 120.00340 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.46935 * 180.02562 * 12 11 9 14 14 C 1.38323 * 119.96578 * 90.00238 * 13 12 11 15 15 C 1.38278 * 120.13283 * 180.27073 * 14 13 12 16 16 C 1.38115 * 120.07300 * 359.44684 * 15 14 13 17 17 C 1.38858 * 119.92981 * 0.52730 * 16 15 14 18 18 O 1.35756 * 120.06979 * 179.76669 * 17 16 15 19 19 C 1.34824 * 117.00195 * 354.44124 * 18 17 16 20 20 H 1.08008 * 119.99737 * 5.05937 * 19 18 17 21 21 C 1.38644 * 120.00377 * 185.05149 * 19 18 17 22 22 N 1.31561 * 120.00006 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00251 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46890 * 90.00606 * 23 21 19 25 25 H 1.48498 * 109.46962 * 209.99892 * 23 21 19 26 26 H 1.48497 * 109.47341 * 330.00239 * 23 21 19 27 27 C 1.38082 * 119.96014 * 269.97357 * 13 12 11 28 28 H 1.09003 * 109.46963 * 171.27876 * 1 2 3 29 29 H 1.08998 * 109.47376 * 291.27893 * 1 2 3 30 30 H 1.08999 * 109.47016 * 51.28324 * 1 2 3 31 31 H 1.08995 * 114.39604 * 27.43335 * 4 2 1 32 32 H 1.09001 * 114.09108 * 254.52737 * 4 2 1 33 33 H 1.08994 * 113.46680 * 218.98399 * 5 4 2 34 34 H 1.09003 * 113.46419 * 88.54516 * 5 4 2 35 35 H 0.96999 * 119.99716 * 0.02562 * 11 9 7 36 36 H 1.08994 * 109.46758 * 59.99734 * 12 11 9 37 37 H 1.09006 * 109.46690 * 300.00215 * 12 11 9 38 38 H 1.07992 * 119.93347 * 359.97438 * 14 13 12 39 39 H 1.08005 * 119.96025 * 179.70065 * 15 14 13 40 40 H 1.08003 * 120.03674 * 180.27179 * 16 15 14 41 41 H 0.96993 * 120.00383 * 179.97438 * 22 21 19 42 42 H 1.07991 * 120.03992 * 0.02711 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0050 0.0000 4 6 2.1444 -0.9219 1.0661 5 6 3.1581 -1.2301 -0.0445 6 7 2.1157 -0.8812 -1.0214 7 6 1.8274 -1.2167 -2.2945 8 8 0.8571 -0.7374 -2.8434 9 6 2.7021 -2.1799 -3.0298 10 8 3.6721 -2.6595 -2.4807 11 7 2.4136 -2.5158 -4.3028 12 6 3.2707 -3.4604 -5.0234 13 6 2.7337 -3.6637 -6.4167 14 6 3.1609 -2.8467 -7.4478 15 6 2.6663 -3.0266 -8.7265 16 6 1.7523 -4.0305 -8.9801 17 6 1.3219 -4.8527 -7.9473 18 8 0.4200 -5.8374 -8.1924 19 6 -0.1052 -5.8914 -9.4330 20 1 0.2553 -5.2237 -10.2016 21 6 -1.1079 -6.8042 -9.7222 22 7 -1.5473 -7.6173 -8.7859 23 14 -1.8351 -6.8795 -11.4413 24 1 -1.0619 -7.8443 -12.2639 25 1 -3.2507 -7.3206 -11.3610 26 1 -1.7706 -5.5336 -12.0655 27 6 1.8162 -4.6659 -6.6627 28 1 -0.3633 -1.0158 -0.1558 29 1 -0.3634 0.3729 0.9576 30 1 -0.3633 0.6428 -0.8018 31 1 1.5166 -1.7680 1.3455 32 1 2.5655 -0.3939 1.9217 33 1 3.4552 -2.2781 -0.0824 34 1 4.0094 -0.5494 -0.0563 35 1 1.6384 -2.1321 -4.7418 36 1 3.2841 -4.4141 -4.4959 37 1 4.2838 -3.0619 -5.0793 38 1 3.8786 -2.0636 -7.2529 39 1 2.9981 -2.3839 -9.5286 40 1 1.3696 -4.1733 -9.9800 41 1 -2.2491 -8.2556 -8.9881 42 1 1.4831 -5.3035 -5.8573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262105475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:20 Heat of formation + Delta-G solvation = -51.984301 kcal Electronic energy + Delta-G solvation = -25358.284576 eV Core-core repulsion = 21497.851642 eV Total energy + Delta-G solvation = -3860.432934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98784 -40.94814 -40.33371 -38.88875 -38.48907 -35.95971 -34.30698 -32.34043 -31.89877 -30.82744 -30.42400 -27.97487 -27.20172 -25.20844 -24.21348 -23.31001 -22.62868 -22.21841 -20.60916 -19.57946 -19.06604 -18.58196 -18.16903 -17.24530 -16.85833 -16.79014 -16.49316 -16.19791 -16.02808 -15.88837 -15.53800 -15.18829 -14.84315 -14.74308 -14.40832 -14.35944 -13.98500 -13.71833 -13.61110 -13.37794 -13.07956 -12.95301 -12.81459 -12.67179 -12.58858 -12.39115 -12.36415 -12.30660 -12.13064 -11.44068 -11.24782 -10.84145 -10.66242 -10.38349 -9.91730 -9.79840 -9.06570 -8.48735 -6.17489 0.28153 0.30152 0.67271 1.21136 1.34481 1.43830 1.52065 2.07664 2.16086 2.36242 2.81599 3.11441 3.26763 3.34109 3.42828 3.75695 3.95628 4.03470 4.05367 4.20492 4.26250 4.32861 4.35593 4.46301 4.48036 4.56118 4.69427 4.73750 4.86066 4.90184 4.97310 5.01828 5.05521 5.10027 5.19456 5.21972 5.36608 5.58045 5.66093 5.68045 5.98208 6.01297 6.13958 6.38134 6.55488 6.88052 6.95912 7.75704 8.74483 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.002396 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.469449 B =11683.511823 C =12368.571076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 H 0.121 0.879 4 C -0.131 4.131 5 C 0.097 3.903 6 N -0.627 5.627 7 C 0.527 3.473 8 O -0.551 6.551 9 C 0.509 3.491 10 O -0.536 6.536 11 N -0.689 5.689 12 C 0.173 3.827 13 C -0.065 4.065 14 C -0.167 4.167 15 C -0.070 4.070 16 C -0.233 4.233 17 C 0.111 3.889 18 O -0.232 6.232 19 C -0.413 4.413 20 H 0.104 0.896 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.252 1.252 27 C -0.180 4.180 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.415 0.585 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.273 0.727 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.359 16.857 16.840 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.138 0.862 4 C -0.169 4.169 5 C -0.024 4.024 6 N -0.362 5.362 7 C 0.311 3.689 8 O -0.429 6.429 9 C 0.290 3.710 10 O -0.413 6.413 11 N -0.341 5.341 12 C 0.051 3.949 13 C -0.065 4.065 14 C -0.186 4.186 15 C -0.088 4.088 16 C -0.252 4.252 17 C 0.061 3.939 18 O -0.139 6.139 19 C -0.489 4.489 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.838 3.162 24 H -0.187 1.187 25 H -0.197 1.197 26 H -0.175 1.175 27 C -0.200 4.200 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.251 0.749 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.269 16.358 16.899 25.663 hybrid contribution -1.077 -0.508 -1.323 1.781 sum 9.191 15.849 15.576 24.048 Atomic orbital electron populations 1.21928 0.94270 1.01633 1.03353 1.23261 0.95396 0.96200 0.83011 0.86173 1.23567 0.97101 0.99836 0.96366 1.23335 0.92487 1.03155 0.83449 1.49922 1.31578 1.44981 1.09742 1.19704 0.85263 0.82753 0.81206 1.90762 1.29519 1.55689 1.66977 1.20153 0.85459 0.82640 0.82728 1.90708 1.28703 1.54388 1.67532 1.45948 1.30874 1.44882 1.12388 1.20271 0.94048 0.93196 0.87364 1.19429 0.96494 0.95339 0.95263 1.21027 1.03851 1.01677 0.92069 1.21178 0.94207 0.95592 0.97822 1.21397 1.04172 1.00393 0.99248 1.19862 0.90481 0.88809 0.94779 1.83948 1.51138 1.44925 1.33839 1.21837 1.19431 1.21877 0.85786 0.87871 1.26606 0.96108 0.94759 1.04637 1.70187 1.28659 1.21373 1.35738 0.84582 0.77471 0.79785 0.74353 1.18726 1.19746 1.17546 1.20246 1.03023 1.02769 0.93996 0.94040 0.88126 0.93557 0.88725 0.85061 0.90299 0.87216 0.74901 0.90512 0.87998 0.83199 0.83195 0.86038 0.91845 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.26 71.98 0.67 -1.67 16 2 C 0.12 1.57 4.68 41.88 0.20 1.77 16 3 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.13 -0.97 8.04 31.02 0.25 -0.72 16 5 C 0.10 1.27 7.61 83.18 0.63 1.90 16 6 N -0.63 -12.75 3.56 -834.82 -2.97 -15.73 16 7 C 0.53 14.56 8.04 87.27 0.70 15.26 16 8 O -0.55 -18.11 16.68 -3.24 -0.05 -18.17 16 9 C 0.51 14.39 7.89 87.27 0.69 15.08 16 10 O -0.54 -15.97 15.20 -3.23 -0.05 -16.02 16 11 N -0.69 -19.19 5.54 -468.13 -2.59 -21.78 16 12 C 0.17 4.71 5.80 85.63 0.50 5.21 16 13 C -0.06 -2.10 5.25 -19.88 -0.10 -2.20 16 14 C -0.17 -4.88 9.70 22.30 0.22 -4.67 16 15 C -0.07 -2.26 10.04 22.25 0.22 -2.04 16 16 C -0.23 -9.80 9.17 22.39 0.21 -9.59 16 17 C 0.11 5.45 6.65 22.58 0.15 5.60 16 18 O -0.23 -13.93 9.76 -22.75 -0.22 -14.15 16 19 C -0.41 -23.98 9.49 67.92 0.64 -23.33 16 20 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 21 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 22 N -0.92 -56.94 13.67 21.61 0.30 -56.65 16 23 Si 1.02 42.86 29.55 68.60 2.03 44.89 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 27 C -0.18 -7.58 9.65 22.39 0.22 -7.37 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.13 0.08 8.14 -2.39 -0.02 0.07 16 33 H 0.08 1.28 7.39 -2.39 -0.02 1.26 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.41 11.93 7.94 -92.71 -0.74 11.19 16 36 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 37 H 0.10 2.37 8.08 -2.38 -0.02 2.35 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 40 H 0.12 5.19 5.64 -2.91 -0.02 5.18 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.11 4.66 8.06 -2.92 -0.02 4.64 16 Total: -1.00 -77.72 363.83 2.40 -75.32 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.32 Total: 29.94 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.65 Total: -7.66 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -5.27 Total: -94.16 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.33 Total: -48.34 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -77.72 2.40 -75.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262105475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.341 kcal (2) G-P(sol) polarization free energy of solvation -77.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds