Wall clock time and date at job start Tue Mar 31 2020 12:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.66844 * 2 1 4 4 C 1.54702 * 110.75053 * 123.21243 * 2 1 3 5 5 C 1.51657 * 101.95127 * 93.24621 * 4 2 1 6 6 C 1.37671 * 132.08851 * 195.92514 * 5 4 2 7 7 C 1.38988 * 119.91858 * 179.30988 * 6 5 4 8 8 N 1.39872 * 120.20045 * 179.71995 * 7 6 5 9 9 C 1.34782 * 119.99619 * 326.72925 * 8 7 6 10 10 O 1.21390 * 119.99961 * 354.58560 * 9 8 7 11 11 C 1.49329 * 120.00091 * 174.86115 * 9 8 7 12 12 O 1.21365 * 119.99732 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00477 * 179.97438 * 11 9 8 14 14 C 1.46493 * 120.00387 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47142 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47123 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00428 * 0.02562 * 16 15 14 18 18 C 1.37883 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99826 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99767 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47383 * 89.99961 * 20 18 16 22 22 H 1.48503 * 109.47126 * 209.99788 * 20 18 16 23 23 H 1.48500 * 109.47408 * 329.99949 * 20 18 16 24 24 C 1.38946 * 119.60971 * 359.44665 * 7 6 5 25 25 C 1.37834 * 120.26518 * 0.48075 * 24 7 6 26 26 C 1.38911 * 107.04891 * 15.15654 * 5 4 2 27 27 O 1.36216 * 111.18808 * 1.43722 * 26 5 4 28 28 H 1.08996 * 109.47482 * 296.78656 * 1 2 3 29 29 H 1.08999 * 109.47042 * 56.79088 * 1 2 3 30 30 H 1.09004 * 109.46787 * 176.78811 * 1 2 3 31 31 H 1.09000 * 110.93458 * 335.08428 * 4 2 1 32 32 H 1.08996 * 110.96732 * 211.42237 * 4 2 1 33 33 H 1.07997 * 120.04469 * 359.05086 * 6 5 4 34 34 H 0.96995 * 120.00348 * 146.72217 * 8 7 6 35 35 H 0.97004 * 119.99389 * 0.02562 * 13 11 9 36 36 H 1.09001 * 109.47527 * 300.00248 * 14 13 11 37 37 H 1.08998 * 109.47550 * 60.00447 * 14 13 11 38 38 H 1.08997 * 109.47222 * 299.99709 * 15 14 13 39 39 H 1.08995 * 109.47392 * 60.00177 * 15 14 13 40 40 H 0.97004 * 119.99576 * 179.97438 * 19 18 16 41 41 H 1.08002 * 119.86221 * 180.45952 * 24 7 6 42 42 H 1.08007 * 119.82216 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7924 1.2103 5 6 2.2679 -2.1763 0.6198 6 6 2.4515 -3.4106 1.2013 7 6 2.5876 -4.5399 0.4027 8 7 2.7802 -5.7959 0.9872 9 6 3.4745 -5.9047 2.1373 10 8 4.0158 -4.9284 2.6141 11 6 3.5829 -7.2274 2.8218 12 8 3.0462 -8.2046 2.3422 13 7 4.2775 -7.3363 3.9716 14 6 4.3843 -8.6340 4.6428 15 6 5.2188 -8.4824 5.9163 16 6 5.3292 -9.8175 6.6064 17 1 4.8523 -10.6873 6.1793 18 6 6.0399 -9.9289 7.7827 19 7 6.1358 -11.0940 8.3852 20 14 6.8654 -8.4247 8.5211 21 1 5.9220 -7.7460 9.4456 22 1 8.0776 -8.8429 9.2701 23 1 7.2529 -7.4893 7.4348 24 6 2.5256 -4.4146 -0.9797 25 6 2.3402 -3.1770 -1.5575 26 6 2.2128 -2.0407 -0.7616 27 8 2.0431 -0.7381 -1.1220 28 1 -0.3634 0.4631 0.9173 29 1 -0.3633 0.5628 -0.8598 30 1 -0.3633 -1.0261 -0.0576 31 1 1.3526 -0.8122 2.0237 32 1 3.0284 -0.3797 1.5487 33 1 2.4938 -3.5007 2.2767 34 1 2.4141 -6.5887 0.5649 35 1 4.7068 -6.5553 4.3547 36 1 3.3880 -8.9921 4.9022 37 1 4.8653 -9.3496 3.9760 38 1 6.2151 -8.1243 5.6573 39 1 4.7375 -7.7670 6.5831 40 1 6.6362 -11.1724 9.2125 41 1 2.6235 -5.2905 -1.6040 42 1 2.2927 -3.0880 -2.6328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262699785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:27 Heat of formation + Delta-G solvation = -76.531973 kcal Electronic energy + Delta-G solvation = -25204.375164 eV Core-core repulsion = 21342.877763 eV Total energy + Delta-G solvation = -3861.497401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66814 -40.79628 -38.94384 -37.60239 -35.52298 -34.50377 -33.49665 -32.85214 -31.17838 -30.37585 -29.53234 -27.26937 -26.05970 -24.20399 -22.83722 -21.95114 -21.77617 -20.94811 -20.32188 -18.69546 -17.68390 -17.41706 -17.03266 -16.79162 -16.29127 -16.04916 -15.80009 -14.97921 -14.65209 -14.62331 -14.23254 -14.14722 -13.93791 -13.75366 -13.49368 -13.29680 -13.04134 -12.90941 -12.65199 -12.65037 -12.55771 -11.81003 -11.60128 -11.57725 -11.54187 -11.29231 -11.16430 -10.48990 -10.36430 -10.15147 -9.99310 -9.57792 -9.37632 -9.17611 -8.86541 -8.64766 -8.02848 -6.15327 -4.16298 0.77060 0.99494 1.51714 2.27602 2.88364 3.14317 3.24003 3.32318 3.33684 3.44108 3.61619 4.02191 4.17075 4.34844 4.44148 4.51672 4.56358 4.70643 4.77262 4.88847 5.06871 5.15967 5.17648 5.30248 5.33063 5.42683 5.55605 5.64910 5.66773 5.89366 5.93347 6.00366 6.04652 6.09569 6.33030 6.39413 6.43366 6.80087 6.87593 7.01740 7.13713 7.42456 7.58246 7.69536 8.08051 8.38190 8.87775 9.44403 10.97330 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.002210 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.029610 B =12664.605281 C =13493.825822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 H 0.116 0.884 4 C -0.107 4.107 5 C -0.152 4.152 6 C -0.071 4.071 7 C 0.119 3.881 8 N -0.645 5.645 9 C 0.508 3.492 10 O -0.502 6.502 11 C 0.501 3.499 12 O -0.525 6.525 13 N -0.688 5.688 14 C 0.127 3.873 15 C -0.024 4.024 16 C -0.525 4.525 17 H 0.077 0.923 18 C 0.070 3.930 19 N -0.896 5.896 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.106 4.106 25 C -0.118 4.118 26 C 0.091 3.909 27 O -0.300 6.300 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.424 0.576 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.020 0.980 40 H 0.265 0.735 41 H 0.138 0.862 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.653 22.243 -19.268 31.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.021 3.979 3 H 0.133 0.867 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.091 4.091 7 C 0.025 3.975 8 N -0.292 5.292 9 C 0.291 3.709 10 O -0.375 6.375 11 C 0.280 3.720 12 O -0.402 6.402 13 N -0.339 5.339 14 C 0.005 3.995 15 C -0.061 4.061 16 C -0.563 4.563 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.126 4.126 25 C -0.137 4.137 26 C 0.045 3.955 27 O -0.214 6.214 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.156 0.844 34 H 0.262 0.738 35 H 0.245 0.755 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.156 0.844 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.516 22.186 -19.227 31.184 hybrid contribution 0.520 0.629 0.685 1.065 sum -9.996 22.814 -18.542 31.052 Atomic orbital electron populations 1.22252 0.94161 1.03357 1.03105 1.23416 0.94725 0.96398 0.83380 0.86663 1.21883 1.02947 0.91082 0.98446 1.20555 1.05993 0.95032 0.93782 1.20250 0.98362 0.89634 1.00813 1.17466 1.03306 0.85035 0.91661 1.43104 1.53214 1.08767 1.24111 1.20620 0.78655 0.90179 0.81478 1.90777 1.43553 1.39052 1.64127 1.19714 0.81300 0.88070 0.82882 1.90771 1.46219 1.38244 1.64984 1.46211 1.50390 1.14673 1.22605 1.21754 1.01620 0.81370 0.94731 1.19827 0.95196 0.99093 0.92030 1.20862 1.34122 0.93730 1.07605 0.90513 1.24992 0.95704 0.95950 0.96568 1.69899 1.41546 1.23694 1.18293 0.86763 0.79380 0.83423 0.79624 1.20156 1.21204 1.18964 1.20621 1.01920 0.97580 0.92481 1.19994 1.05269 0.88671 0.99791 1.19547 0.98121 0.85136 0.92670 1.86898 1.79969 1.16504 1.38065 0.90596 0.91347 0.91761 0.88815 0.88814 0.84370 0.73780 0.75493 0.91114 0.91079 0.95687 0.96136 0.92473 0.84410 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 9.51 37.16 0.35 -0.61 16 2 C 0.08 0.52 4.31 -25.84 -0.11 0.41 16 3 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.81 6.65 -26.52 -0.18 -0.98 16 5 C -0.15 -1.57 6.26 -104.11 -0.65 -2.22 16 6 C -0.07 -0.81 8.65 -39.51 -0.34 -1.15 16 7 C 0.12 1.30 6.29 -83.65 -0.53 0.77 16 8 N -0.64 -7.18 5.33 -10.25 -0.05 -7.23 16 9 C 0.51 6.97 7.63 -11.64 -0.09 6.88 16 10 O -0.50 -7.65 14.18 5.46 0.08 -7.57 16 11 C 0.50 7.84 7.88 -11.64 -0.09 7.75 16 12 O -0.52 -9.17 16.48 5.48 0.09 -9.08 16 13 N -0.69 -11.27 5.55 -60.77 -0.34 -11.60 16 14 C 0.13 2.45 5.61 -4.04 -0.02 2.42 16 15 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 16 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 17 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16 20 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 24 C -0.11 -0.94 9.94 -39.47 -0.39 -1.33 16 25 C -0.12 -1.07 10.05 -39.33 -0.40 -1.47 16 26 C 0.09 0.93 6.91 -38.93 -0.27 0.67 16 27 O -0.30 -2.96 10.83 -20.43 -0.22 -3.18 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.09 0.58 7.92 -51.93 -0.41 0.17 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.14 1.71 6.43 -52.49 -0.34 1.37 16 34 H 0.42 3.95 8.30 -40.82 -0.34 3.61 16 35 H 0.41 6.18 7.94 -40.82 -0.32 5.85 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 39 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -32.39 358.23 -7.77 -40.16 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.57 Total: 5.30 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.26 Total: -2.29 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.38 Total: -44.94 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.39 -7.77 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262699785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.375 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds