Wall clock time and date at job start Tue Mar 31 2020 12:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.66844 * 2 1 4 4 C 1.54702 * 110.75053 * 123.21243 * 2 1 3 5 5 C 1.51657 * 101.95127 * 93.24621 * 4 2 1 6 6 C 1.37671 * 132.08851 * 195.92514 * 5 4 2 7 7 C 1.38988 * 119.91858 * 179.30988 * 6 5 4 8 8 N 1.39872 * 120.20045 * 179.71995 * 7 6 5 9 9 C 1.34782 * 119.99619 * 326.72925 * 8 7 6 10 10 O 1.21390 * 119.99961 * 354.58560 * 9 8 7 11 11 C 1.49329 * 120.00091 * 174.86115 * 9 8 7 12 12 O 1.21365 * 119.99732 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00477 * 179.97438 * 11 9 8 14 14 C 1.46493 * 120.00387 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47142 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47123 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00428 * 0.02562 * 16 15 14 18 18 C 1.37883 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99826 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99767 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47383 * 89.99961 * 20 18 16 22 22 H 1.48503 * 109.47126 * 209.99788 * 20 18 16 23 23 H 1.48500 * 109.47408 * 329.99949 * 20 18 16 24 24 C 1.38946 * 119.60971 * 359.44665 * 7 6 5 25 25 C 1.37834 * 120.26518 * 0.48075 * 24 7 6 26 26 C 1.38911 * 107.04891 * 15.15654 * 5 4 2 27 27 O 1.36216 * 111.18808 * 1.43722 * 26 5 4 28 28 H 1.08996 * 109.47482 * 296.78656 * 1 2 3 29 29 H 1.08999 * 109.47042 * 56.79088 * 1 2 3 30 30 H 1.09004 * 109.46787 * 176.78811 * 1 2 3 31 31 H 1.09000 * 110.93458 * 335.08428 * 4 2 1 32 32 H 1.08996 * 110.96732 * 211.42237 * 4 2 1 33 33 H 1.07997 * 120.04469 * 359.05086 * 6 5 4 34 34 H 0.96995 * 120.00348 * 146.72217 * 8 7 6 35 35 H 0.97004 * 119.99389 * 0.02562 * 13 11 9 36 36 H 1.09001 * 109.47527 * 300.00248 * 14 13 11 37 37 H 1.08998 * 109.47550 * 60.00447 * 14 13 11 38 38 H 1.08997 * 109.47222 * 299.99709 * 15 14 13 39 39 H 1.08995 * 109.47392 * 60.00177 * 15 14 13 40 40 H 0.97004 * 119.99576 * 179.97438 * 19 18 16 41 41 H 1.08002 * 119.86221 * 180.45952 * 24 7 6 42 42 H 1.08007 * 119.82216 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7924 1.2103 5 6 2.2679 -2.1763 0.6198 6 6 2.4515 -3.4106 1.2013 7 6 2.5876 -4.5399 0.4027 8 7 2.7802 -5.7959 0.9872 9 6 3.4745 -5.9047 2.1373 10 8 4.0158 -4.9284 2.6141 11 6 3.5829 -7.2274 2.8218 12 8 3.0462 -8.2046 2.3422 13 7 4.2775 -7.3363 3.9716 14 6 4.3843 -8.6340 4.6428 15 6 5.2188 -8.4824 5.9163 16 6 5.3292 -9.8175 6.6064 17 1 4.8523 -10.6873 6.1793 18 6 6.0399 -9.9289 7.7827 19 7 6.1358 -11.0940 8.3852 20 14 6.8654 -8.4247 8.5211 21 1 5.9220 -7.7460 9.4456 22 1 8.0776 -8.8429 9.2701 23 1 7.2529 -7.4893 7.4348 24 6 2.5256 -4.4146 -0.9797 25 6 2.3402 -3.1770 -1.5575 26 6 2.2128 -2.0407 -0.7616 27 8 2.0431 -0.7381 -1.1220 28 1 -0.3634 0.4631 0.9173 29 1 -0.3633 0.5628 -0.8598 30 1 -0.3633 -1.0261 -0.0576 31 1 1.3526 -0.8122 2.0237 32 1 3.0284 -0.3797 1.5487 33 1 2.4938 -3.5007 2.2767 34 1 2.4141 -6.5887 0.5649 35 1 4.7068 -6.5553 4.3547 36 1 3.3880 -8.9921 4.9022 37 1 4.8653 -9.3496 3.9760 38 1 6.2151 -8.1243 5.6573 39 1 4.7375 -7.7670 6.5831 40 1 6.6362 -11.1724 9.2125 41 1 2.6235 -5.2905 -1.6040 42 1 2.2927 -3.0880 -2.6328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262699785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:26 Heat of formation + Delta-G solvation = -99.365937 kcal Electronic energy + Delta-G solvation = -25205.365319 eV Core-core repulsion = 21342.877763 eV Total energy + Delta-G solvation = -3862.487556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.44597 -41.81074 -40.09890 -38.50724 -36.95774 -35.57541 -34.77185 -34.11529 -32.15778 -31.79301 -30.38265 -27.94669 -27.53066 -25.52751 -23.73171 -22.76281 -22.56885 -22.49210 -21.46474 -19.84351 -19.03845 -18.50597 -18.19764 -17.74498 -17.23440 -17.08583 -16.77451 -16.26546 -16.21040 -15.89077 -15.31765 -15.24895 -14.92726 -14.66078 -14.59157 -14.48193 -14.15149 -13.81551 -13.60831 -13.40292 -13.22357 -13.10398 -13.07499 -12.89907 -12.31176 -12.24331 -12.20856 -12.13281 -11.83668 -11.78978 -11.51494 -10.99946 -10.79498 -10.75686 -10.28863 -9.92517 -8.81184 -8.30551 -6.37283 -0.14981 0.24826 0.49721 1.15968 1.39277 1.41003 1.51967 1.98478 2.25577 2.35870 2.52605 2.66497 3.04671 3.25178 3.44552 3.58732 3.86273 3.95476 4.10690 4.19809 4.24728 4.27967 4.38327 4.47237 4.55698 4.65816 4.71745 4.76169 4.88143 4.93932 4.94886 5.02854 5.16195 5.21017 5.23563 5.28610 5.35257 5.36473 5.54888 5.58729 5.84906 6.15960 6.19054 6.27580 6.60943 6.70579 6.82947 7.27235 8.85587 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.002210 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.029610 B =12664.605281 C =13493.825822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.073 3.927 3 H 0.138 0.862 4 C -0.107 4.107 5 C -0.165 4.165 6 C -0.087 4.087 7 C 0.099 3.901 8 N -0.628 5.628 9 C 0.516 3.484 10 O -0.518 6.518 11 C 0.506 3.494 12 O -0.544 6.544 13 N -0.685 5.685 14 C 0.142 3.858 15 C -0.018 4.018 16 C -0.535 4.535 17 H 0.037 0.963 18 C 0.007 3.993 19 N -0.947 5.947 20 Si 0.953 3.047 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.241 1.241 24 C -0.096 4.096 25 C -0.121 4.121 26 C 0.082 3.918 27 O -0.314 6.314 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.433 0.567 35 H 0.418 0.582 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.268 0.732 41 H 0.166 0.834 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 25.146 -20.485 34.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 H 0.156 0.844 4 C -0.144 4.144 5 C -0.166 4.166 6 C -0.107 4.107 7 C 0.005 3.995 8 N -0.276 5.276 9 C 0.298 3.702 10 O -0.393 6.393 11 C 0.286 3.714 12 O -0.422 6.422 13 N -0.337 5.337 14 C 0.019 3.981 15 C -0.056 4.056 16 C -0.574 4.574 17 H 0.055 0.945 18 C -0.191 4.191 19 N -0.587 5.587 20 Si 0.776 3.224 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.164 1.164 24 C -0.116 4.116 25 C -0.140 4.140 26 C 0.036 3.964 27 O -0.229 6.229 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.273 0.727 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.183 0.817 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.620 25.116 -20.491 34.110 hybrid contribution 0.451 -0.292 0.955 1.096 sum -10.169 24.824 -19.536 33.185 Atomic orbital electron populations 1.22244 0.93281 1.02648 1.04339 1.23691 0.95468 0.96959 0.82062 0.84406 1.21986 1.03591 0.89734 0.99114 1.20822 1.05730 0.95706 0.94354 1.20255 0.99545 0.90559 1.00307 1.17651 1.04773 0.84485 0.92562 1.42959 1.52054 1.09515 1.23044 1.20099 0.79187 0.88808 0.82121 1.90779 1.44683 1.39057 1.64820 1.19994 0.80319 0.88699 0.82351 1.90764 1.46816 1.39221 1.65391 1.45963 1.50963 1.13789 1.22946 1.21313 1.00474 0.82630 0.93696 1.19698 0.96393 0.96462 0.93003 1.21196 1.33337 0.94902 1.07946 0.94511 1.26001 0.96558 0.99391 0.97145 1.70059 1.43061 1.26457 1.19115 0.85625 0.78122 0.79405 0.79290 1.19093 1.21238 1.16402 1.20897 1.00305 0.98596 0.91767 1.20335 1.04408 0.88338 1.00939 1.19835 0.97941 0.85732 0.92887 1.86879 1.80169 1.16403 1.39415 0.88793 0.90772 0.93310 0.87655 0.88433 0.85774 0.72745 0.74464 0.92012 0.92018 0.94610 0.94699 0.92331 0.81680 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.51 71.98 0.68 -0.88 16 2 C 0.07 0.86 4.31 31.17 0.13 1.00 16 3 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.47 6.65 30.73 0.20 -1.27 16 5 C -0.16 -3.25 6.26 -19.53 -0.12 -3.37 16 6 C -0.09 -1.95 8.65 22.32 0.19 -1.75 16 7 C 0.10 2.03 6.29 38.21 0.24 2.27 16 8 N -0.63 -13.21 5.33 -304.67 -1.63 -14.84 16 9 C 0.52 13.65 7.63 87.23 0.67 14.31 16 10 O -0.52 -15.35 14.18 -3.37 -0.05 -15.40 16 11 C 0.51 15.39 7.88 87.23 0.69 16.08 16 12 O -0.54 -18.67 16.48 -3.29 -0.05 -18.72 16 13 N -0.68 -21.69 5.55 -464.55 -2.58 -24.27 16 14 C 0.14 5.43 5.61 86.38 0.48 5.92 16 15 C -0.02 -0.77 4.16 29.85 0.12 -0.65 16 16 C -0.54 -29.74 9.66 25.60 0.25 -29.50 16 17 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 18 C 0.01 0.37 5.47 84.66 0.46 0.84 16 19 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16 20 Si 0.95 42.34 27.47 68.60 1.88 44.23 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 24 C -0.10 -1.50 9.94 22.34 0.22 -1.28 16 25 C -0.12 -1.95 10.05 22.43 0.23 -1.72 16 26 C 0.08 1.57 6.91 22.69 0.16 1.72 16 27 O -0.31 -5.69 10.83 -96.01 -1.04 -6.73 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.61 8.08 -2.38 -0.02 0.59 16 31 H 0.11 1.16 7.92 -2.39 -0.02 1.14 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.12 3.09 6.43 -2.91 -0.02 3.07 16 34 H 0.43 7.43 8.30 -92.71 -0.77 6.66 16 35 H 0.42 11.91 7.94 -92.71 -0.74 11.17 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.04 1.49 7.20 -2.39 -0.02 1.48 16 39 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -70.75 358.23 0.96 -69.79 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.49 Total: 22.12 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 4.61 Total: 1.71 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -3.90 Total: -97.00 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.14 Total: -40.85 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.23 kcal Total: -70.75 0.96 -69.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262699785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.577 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds