Wall clock time and date at job start Tue Mar 31 2020 12:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00156 * 2 1 4 4 C 1.53004 * 109.47371 * 124.99551 * 3 2 1 5 5 H 1.09006 * 109.46723 * 54.99870 * 4 3 2 6 6 C 1.52995 * 109.47133 * 174.99812 * 4 3 2 7 7 N 1.46498 * 109.46832 * 295.00008 * 4 3 2 8 8 C 1.34776 * 119.99731 * 155.00066 * 7 4 3 9 9 O 1.21367 * 120.00236 * 359.97438 * 8 7 4 10 10 C 1.49318 * 120.00087 * 180.02562 * 8 7 4 11 11 O 1.21395 * 119.99743 * 359.97438 * 10 8 7 12 12 N 1.34772 * 120.00442 * 179.97438 * 10 8 7 13 13 C 1.39742 * 120.00336 * 175.49416 * 12 10 8 14 14 C 1.39000 * 120.00510 * 214.86854 * 13 12 10 15 15 C 1.37978 * 119.98737 * 179.74297 * 14 13 12 16 16 C 1.38935 * 120.00526 * 0.50643 * 15 14 13 17 17 O 1.35763 * 119.98687 * 179.74341 * 16 15 14 18 18 C 1.34802 * 116.99751 * 185.36416 * 17 16 15 19 19 H 1.08004 * 119.99991 * 354.97062 * 18 17 16 20 20 C 1.38647 * 119.99870 * 174.96375 * 18 17 16 21 21 N 1.31560 * 120.00345 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99705 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47449 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47125 * 120.00270 * 22 20 18 25 25 H 1.48503 * 109.47196 * 240.00066 * 22 20 18 26 26 C 1.38928 * 120.01570 * 359.76975 * 16 15 14 27 27 C 1.37969 * 120.01097 * 359.97438 * 26 16 15 28 28 H 1.07999 * 120.00310 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00294 * 179.72686 * 1 2 3 30 30 H 1.08003 * 119.99585 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46728 * 244.99358 * 3 2 1 32 32 H 1.09000 * 109.46888 * 4.99219 * 3 2 1 33 33 H 1.08998 * 109.46953 * 300.00012 * 6 4 3 34 34 H 1.08997 * 109.46996 * 59.99827 * 6 4 3 35 35 H 1.08995 * 109.46911 * 180.02562 * 6 4 3 36 36 H 0.97000 * 119.99983 * 334.99732 * 7 4 3 37 37 H 0.97002 * 119.99883 * 355.50007 * 12 10 8 38 38 H 1.07995 * 120.00846 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.99008 * 180.25448 * 15 14 13 40 40 H 0.96996 * 120.00393 * 179.97438 * 21 20 18 41 41 H 1.08008 * 119.99371 * 179.97438 * 26 16 15 42 42 H 1.08002 * 120.00695 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 3.6826 0.4573 1.1405 6 6 3.8875 2.6016 1.1110 7 7 2.2784 1.3224 2.4361 8 6 2.8471 0.8477 3.5620 9 8 3.9858 0.4286 3.5366 10 6 2.0758 0.8362 4.8405 11 8 0.9367 1.2550 4.8659 12 7 2.6443 0.3610 5.9663 13 6 1.9580 0.4366 7.1813 14 6 2.6573 0.6586 8.3619 15 6 1.9787 0.7385 9.5607 16 6 0.5980 0.5865 9.5890 17 8 -0.0686 0.6599 10.7694 18 6 -1.3899 0.3940 10.7435 19 1 -1.8867 0.2165 9.8011 20 6 -2.1111 0.3481 11.9268 21 7 -1.5061 0.5647 13.0747 22 14 -3.9419 -0.0212 11.8909 23 1 -4.3785 -0.2248 10.4863 24 1 -4.2143 -1.2509 12.6777 25 1 -4.6885 1.1191 12.4804 26 6 -0.1004 0.3589 8.4098 27 6 0.5768 0.2841 7.2101 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0045 30 1 1.8499 -0.9354 0.0004 31 1 2.6213 1.4024 -0.9313 32 1 1.3585 2.1316 0.0894 33 1 4.4504 2.6095 0.1777 34 1 3.2399 3.4773 1.1522 35 1 4.5799 2.6213 1.9526 36 1 1.3682 1.6571 2.4564 37 1 3.5299 -0.0334 5.9333 38 1 3.7310 0.7724 8.3405 39 1 2.5215 0.9151 10.4775 40 1 -2.0107 0.5330 13.9025 41 1 -1.1737 0.2403 8.4323 42 1 0.0338 0.1068 6.2935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318599958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:31 Heat of formation + Delta-G solvation = -49.627138 kcal Electronic energy + Delta-G solvation = -25316.617127 eV Core-core repulsion = 21456.286407 eV Total energy + Delta-G solvation = -3860.330720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.91558 -39.45631 -38.50601 -37.09329 -36.59384 -34.31053 -33.70120 -32.22282 -31.32483 -30.26656 -28.33875 -27.07600 -25.62313 -24.75694 -22.48387 -21.83128 -21.04081 -20.48942 -20.00059 -18.81699 -17.95194 -17.30430 -17.02296 -16.35768 -15.99667 -15.81455 -15.12186 -14.68928 -14.51640 -14.27208 -14.12660 -13.95363 -13.64820 -13.62767 -13.51650 -12.95844 -12.92904 -12.70558 -12.61608 -12.16880 -11.84909 -11.78781 -11.60716 -11.45251 -11.32180 -11.26323 -11.07337 -10.75498 -10.44239 -9.80290 -9.77813 -9.61490 -9.48263 -9.21656 -8.75429 -8.26405 -7.01493 -6.48425 -4.05687 1.27252 1.92077 2.12554 2.18072 2.39204 3.10709 3.13443 3.19105 3.23932 3.61688 3.94888 4.25622 4.41338 4.48001 4.54941 4.72402 4.90468 5.00437 5.06086 5.13181 5.21861 5.28260 5.36686 5.55039 5.61205 5.62810 5.67968 5.83475 6.02656 6.04592 6.10610 6.24014 6.26521 6.38119 6.62946 6.72649 6.88872 6.95836 7.04737 7.24533 7.38420 7.45414 7.68362 7.73906 7.96619 8.09828 8.97277 9.65789 10.69320 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002429 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.414060 B =11524.647330 C =12613.699968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C -0.102 4.102 4 C 0.143 3.857 5 H 0.094 0.906 6 C -0.166 4.166 7 N -0.695 5.695 8 C 0.514 3.486 9 O -0.524 6.524 10 C 0.495 3.505 11 O -0.509 6.509 12 N -0.624 5.624 13 C 0.022 3.978 14 C -0.085 4.085 15 C -0.178 4.178 16 C 0.150 3.850 17 O -0.174 6.174 18 C -0.391 4.391 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.222 4.222 27 C -0.060 4.060 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.413 0.587 37 H 0.414 0.586 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.270 0.730 41 H 0.132 0.868 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 0.748 -24.100 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.178 4.178 3 C -0.139 4.139 4 C 0.039 3.961 5 H 0.112 0.888 6 C -0.224 4.224 7 N -0.348 5.348 8 C 0.294 3.706 9 O -0.400 6.400 10 C 0.276 3.724 11 O -0.385 6.385 12 N -0.269 5.269 13 C -0.070 4.070 14 C -0.105 4.105 15 C -0.198 4.198 16 C 0.095 3.905 17 O -0.077 6.077 18 C -0.467 4.467 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.242 4.242 27 C -0.080 4.080 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.080 0.920 41 H 0.150 0.850 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.633 0.827 -23.646 24.861 hybrid contribution -0.933 -0.227 -0.049 0.961 sum 6.701 0.601 -23.695 24.632 Atomic orbital electron populations 1.23902 0.95901 1.02145 1.00346 1.22890 0.96122 0.98197 1.00564 1.21099 0.98482 0.96335 0.98016 1.21052 0.93047 0.99928 0.82036 0.88832 1.22207 1.00167 0.97153 1.02900 1.45829 1.18614 1.62565 1.07831 1.20152 0.86759 0.78491 0.85148 1.90750 1.17713 1.45795 1.85701 1.20049 0.87296 0.79962 0.85095 1.90775 1.17122 1.45449 1.85136 1.42842 1.20826 1.57422 1.05845 1.17245 0.91957 1.14103 0.83698 1.20393 0.98637 1.00596 0.90859 1.20005 0.91652 1.10463 0.97640 1.19441 0.91603 0.92774 0.86643 1.83968 1.22886 1.75210 1.25589 1.21408 0.80734 1.49596 0.94956 0.88862 1.25307 1.00515 0.96591 0.94110 1.70045 1.36623 1.45096 0.97749 0.85634 0.80455 0.78370 0.78919 1.19004 1.20105 1.20111 1.21091 1.00890 1.10562 0.91620 1.20839 0.92288 0.96984 0.97876 0.88444 0.88375 0.87288 0.89046 0.90580 0.91213 0.92089 0.91691 0.75101 0.75008 0.86430 0.85840 0.91993 0.85041 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 14.32 29.02 0.42 -0.86 16 2 C -0.16 -1.07 9.25 -36.03 -0.33 -1.40 16 3 C -0.10 -0.56 5.20 -27.88 -0.15 -0.70 16 4 C 0.14 1.06 2.56 -67.93 -0.17 0.89 16 5 H 0.09 0.79 7.58 -51.93 -0.39 0.39 16 6 C -0.17 -1.12 9.48 37.16 0.35 -0.77 16 7 N -0.69 -6.66 4.78 -54.28 -0.26 -6.92 16 8 C 0.51 6.39 7.85 -11.65 -0.09 6.30 16 9 O -0.52 -7.24 16.14 5.48 0.09 -7.15 16 10 C 0.49 7.27 7.73 -11.65 -0.09 7.18 16 11 O -0.51 -8.63 13.91 5.46 0.08 -8.55 16 12 N -0.62 -9.20 5.32 -10.27 -0.05 -9.26 16 13 C 0.02 0.40 6.30 -83.69 -0.53 -0.13 16 14 C -0.08 -1.48 9.96 -39.39 -0.39 -1.87 16 15 C -0.18 -3.65 9.98 -39.42 -0.39 -4.05 16 16 C 0.15 3.59 6.65 -39.07 -0.26 3.33 16 17 O -0.17 -4.89 9.75 0.09 0.00 -4.89 16 18 C -0.39 -10.84 9.48 30.88 0.29 -10.54 16 19 H 0.09 2.41 5.19 -52.48 -0.27 2.13 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.99 13.67 55.48 0.76 -24.24 16 22 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.22 -4.91 9.16 -39.42 -0.36 -5.27 16 27 C -0.06 -1.19 8.68 -39.40 -0.34 -1.53 16 28 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 29 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.11 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.38 7.79 -51.93 -0.40 -0.02 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.41 3.74 8.07 -40.82 -0.33 3.41 16 37 H 0.41 5.14 8.30 -40.82 -0.34 4.80 16 38 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.13 2.92 5.63 -52.48 -0.30 2.62 16 42 H 0.13 2.40 6.22 -52.49 -0.33 2.07 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -32.10 366.29 -6.33 -38.43 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.29 Total: 10.12 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.15 Total: -8.46 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.44 Total: -40.41 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.17 Total: -20.59 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.10 -6.33 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318599958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.201 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds