Wall clock time and date at job start Tue Mar 31 2020 12:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00156 * 2 1 4 4 C 1.53004 * 109.47371 * 124.99551 * 3 2 1 5 5 H 1.09006 * 109.46723 * 54.99870 * 4 3 2 6 6 C 1.52995 * 109.47133 * 174.99812 * 4 3 2 7 7 N 1.46498 * 109.46832 * 295.00008 * 4 3 2 8 8 C 1.34776 * 119.99731 * 155.00066 * 7 4 3 9 9 O 1.21367 * 120.00236 * 359.97438 * 8 7 4 10 10 C 1.49318 * 120.00087 * 180.02562 * 8 7 4 11 11 O 1.21395 * 119.99743 * 359.97438 * 10 8 7 12 12 N 1.34772 * 120.00442 * 179.97438 * 10 8 7 13 13 C 1.39742 * 120.00336 * 175.49416 * 12 10 8 14 14 C 1.39000 * 120.00510 * 214.86854 * 13 12 10 15 15 C 1.37978 * 119.98737 * 179.74297 * 14 13 12 16 16 C 1.38935 * 120.00526 * 0.50643 * 15 14 13 17 17 O 1.35763 * 119.98687 * 179.74341 * 16 15 14 18 18 C 1.34802 * 116.99751 * 185.36416 * 17 16 15 19 19 H 1.08004 * 119.99991 * 354.97062 * 18 17 16 20 20 C 1.38647 * 119.99870 * 174.96375 * 18 17 16 21 21 N 1.31560 * 120.00345 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99705 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47449 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47125 * 120.00270 * 22 20 18 25 25 H 1.48503 * 109.47196 * 240.00066 * 22 20 18 26 26 C 1.38928 * 120.01570 * 359.76975 * 16 15 14 27 27 C 1.37969 * 120.01097 * 359.97438 * 26 16 15 28 28 H 1.07999 * 120.00310 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00294 * 179.72686 * 1 2 3 30 30 H 1.08003 * 119.99585 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46728 * 244.99358 * 3 2 1 32 32 H 1.09000 * 109.46888 * 4.99219 * 3 2 1 33 33 H 1.08998 * 109.46953 * 300.00012 * 6 4 3 34 34 H 1.08997 * 109.46996 * 59.99827 * 6 4 3 35 35 H 1.08995 * 109.46911 * 180.02562 * 6 4 3 36 36 H 0.97000 * 119.99983 * 334.99732 * 7 4 3 37 37 H 0.97002 * 119.99883 * 355.50007 * 12 10 8 38 38 H 1.07995 * 120.00846 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.99008 * 180.25448 * 15 14 13 40 40 H 0.96996 * 120.00393 * 179.97438 * 21 20 18 41 41 H 1.08008 * 119.99371 * 179.97438 * 26 16 15 42 42 H 1.08002 * 120.00695 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 3.6826 0.4573 1.1405 6 6 3.8875 2.6016 1.1110 7 7 2.2784 1.3224 2.4361 8 6 2.8471 0.8477 3.5620 9 8 3.9858 0.4286 3.5366 10 6 2.0758 0.8362 4.8405 11 8 0.9367 1.2550 4.8659 12 7 2.6443 0.3610 5.9663 13 6 1.9580 0.4366 7.1813 14 6 2.6573 0.6586 8.3619 15 6 1.9787 0.7385 9.5607 16 6 0.5980 0.5865 9.5890 17 8 -0.0686 0.6599 10.7694 18 6 -1.3899 0.3940 10.7435 19 1 -1.8867 0.2165 9.8011 20 6 -2.1111 0.3481 11.9268 21 7 -1.5061 0.5647 13.0747 22 14 -3.9419 -0.0212 11.8909 23 1 -4.3785 -0.2248 10.4863 24 1 -4.2143 -1.2509 12.6777 25 1 -4.6885 1.1191 12.4804 26 6 -0.1004 0.3589 8.4098 27 6 0.5768 0.2841 7.2101 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0045 30 1 1.8499 -0.9354 0.0004 31 1 2.6213 1.4024 -0.9313 32 1 1.3585 2.1316 0.0894 33 1 4.4504 2.6095 0.1777 34 1 3.2399 3.4773 1.1522 35 1 4.5799 2.6213 1.9526 36 1 1.3682 1.6571 2.4564 37 1 3.5299 -0.0334 5.9333 38 1 3.7310 0.7724 8.3405 39 1 2.5215 0.9151 10.4775 40 1 -2.0107 0.5330 13.9025 41 1 -1.1737 0.2403 8.4323 42 1 0.0338 0.1068 6.2935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318599958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:30 Heat of formation + Delta-G solvation = -71.559668 kcal Electronic energy + Delta-G solvation = -25317.568193 eV Core-core repulsion = 21456.286407 eV Total energy + Delta-G solvation = -3861.281786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.09131 -40.85697 -39.94130 -38.21145 -37.84444 -35.60279 -34.54146 -34.16718 -32.05427 -31.88371 -29.90626 -27.58180 -27.44108 -26.05940 -24.01666 -23.14907 -22.02122 -21.45478 -20.78723 -20.17352 -19.58865 -18.83930 -18.33337 -17.56464 -17.05862 -16.90978 -16.30794 -16.13880 -15.86839 -15.52181 -15.36658 -15.23875 -15.00749 -14.77221 -14.68225 -14.26838 -14.11938 -13.59702 -13.50662 -13.42542 -13.27193 -13.23703 -12.76575 -12.69548 -12.64780 -12.41888 -12.10429 -11.93397 -11.78967 -11.46565 -11.13273 -10.73460 -10.58459 -10.40155 -10.16252 -9.88004 -8.70335 -8.47849 -6.14543 0.06900 0.50655 0.69932 1.26387 1.36181 1.40535 1.43743 1.54051 2.08101 2.17598 2.58207 2.79117 3.12617 3.35195 3.48621 3.74914 3.95237 4.05900 4.08153 4.22289 4.36124 4.44805 4.45959 4.57628 4.64353 4.68711 4.75026 4.90214 5.02907 5.04800 5.07097 5.09619 5.25236 5.27846 5.32829 5.36086 5.49600 5.66265 5.75824 5.87019 5.89184 6.01230 6.10147 6.32124 6.71576 6.89835 6.97100 7.75088 8.74958 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002429 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.414060 B =11524.647330 C =12613.699968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C -0.094 4.094 4 C 0.141 3.859 5 H 0.086 0.914 6 C -0.162 4.162 7 N -0.681 5.681 8 C 0.520 3.480 9 O -0.537 6.537 10 C 0.497 3.503 11 O -0.530 6.530 12 N -0.620 5.620 13 C 0.049 3.951 14 C -0.071 4.071 15 C -0.180 4.180 16 C 0.113 3.887 17 O -0.224 6.224 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.020 4.020 21 N -0.917 5.917 22 Si 1.017 2.983 23 H -0.254 1.254 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.227 4.227 27 C -0.068 4.068 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.416 0.584 37 H 0.429 0.571 38 H 0.164 0.836 39 H 0.131 0.869 40 H 0.273 0.727 41 H 0.122 0.878 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.544 0.929 -27.293 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.183 4.183 3 C -0.132 4.132 4 C 0.038 3.962 5 H 0.104 0.896 6 C -0.221 4.221 7 N -0.334 5.334 8 C 0.300 3.700 9 O -0.415 6.415 10 C 0.279 3.721 11 O -0.407 6.407 12 N -0.267 5.267 13 C -0.044 4.044 14 C -0.091 4.091 15 C -0.199 4.199 16 C 0.062 3.938 17 O -0.130 6.130 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.218 4.218 21 N -0.555 5.555 22 Si 0.836 3.164 23 H -0.177 1.177 24 H -0.192 1.192 25 H -0.193 1.193 26 C -0.247 4.247 27 C -0.088 4.088 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.254 0.746 37 H 0.268 0.732 38 H 0.182 0.818 39 H 0.149 0.851 40 H 0.083 0.917 41 H 0.140 0.860 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.611 1.011 -26.931 28.292 hybrid contribution -0.965 -0.265 0.578 1.156 sum 7.646 0.746 -26.353 27.450 Atomic orbital electron populations 1.24016 0.96177 1.02451 1.00626 1.23018 0.96181 0.98777 1.00332 1.21093 0.98272 0.95904 0.97894 1.21250 0.93352 1.00109 0.81444 0.89593 1.22182 0.99870 0.96796 1.03204 1.45919 1.18811 1.60900 1.07763 1.19659 0.86318 0.79125 0.84885 1.90758 1.18058 1.46932 1.85721 1.20536 0.87008 0.78788 0.85739 1.90775 1.18242 1.46086 1.85575 1.42791 1.21315 1.57745 1.04817 1.17375 0.91435 1.10420 0.85210 1.20782 1.00749 0.98327 0.89216 1.20310 0.90524 1.09719 0.99374 1.19962 0.93042 0.94541 0.86285 1.83938 1.23249 1.78203 1.27651 1.21840 0.81294 1.50124 0.95670 0.88227 1.26545 1.05703 0.96169 0.93399 1.70175 1.38848 1.47866 0.98596 0.84551 0.73831 0.78452 0.79529 1.17693 1.19221 1.19300 1.21100 1.00668 1.10824 0.92119 1.20934 0.93425 0.97347 0.97106 0.87780 0.88639 0.87580 0.86894 0.89674 0.89035 0.91451 0.93705 0.74643 0.73200 0.81819 0.85140 0.91749 0.86047 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.35 14.32 67.79 0.97 -1.38 16 2 C -0.17 -1.86 9.25 25.65 0.24 -1.62 16 3 C -0.09 -0.75 5.20 29.85 0.16 -0.59 16 4 C 0.14 1.72 2.56 44.99 0.12 1.83 16 5 H 0.09 1.24 7.58 -2.38 -0.02 1.22 16 6 C -0.16 -1.73 9.48 71.98 0.68 -1.05 16 7 N -0.68 -11.41 4.78 -443.99 -2.12 -13.54 16 8 C 0.52 11.70 7.85 87.23 0.68 12.39 16 9 O -0.54 -13.53 16.14 -3.30 -0.05 -13.58 16 10 C 0.50 13.43 7.73 87.23 0.67 14.10 16 11 O -0.53 -16.96 13.91 -3.39 -0.05 -17.00 16 12 N -0.62 -16.45 5.32 -304.75 -1.62 -18.07 16 13 C 0.05 1.63 6.30 38.24 0.24 1.87 16 14 C -0.07 -2.29 9.96 22.39 0.22 -2.07 16 15 C -0.18 -7.31 9.98 22.38 0.22 -7.09 16 16 C 0.11 5.57 6.65 22.60 0.15 5.72 16 17 O -0.22 -13.34 9.75 -22.61 -0.22 -13.56 16 18 C -0.41 -24.04 9.48 67.92 0.64 -23.39 16 19 H 0.10 5.39 5.19 -2.91 -0.02 5.37 16 20 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 21 N -0.92 -55.82 13.67 21.61 0.30 -55.52 16 22 Si 1.02 42.96 29.55 68.60 2.03 44.98 16 23 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 C -0.23 -10.28 9.16 22.37 0.20 -10.08 16 27 C -0.07 -2.64 8.68 22.39 0.19 -2.44 16 28 H 0.10 1.08 7.84 -2.91 -0.02 1.06 16 29 H 0.10 1.16 8.06 -2.91 -0.02 1.14 16 30 H 0.11 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.57 7.79 -2.39 -0.02 0.55 16 33 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.42 6.54 8.07 -92.71 -0.75 5.79 16 37 H 0.43 9.14 8.30 -92.71 -0.77 8.37 16 38 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 39 H 0.13 5.07 8.06 -2.91 -0.02 5.04 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 42 H 0.13 4.93 6.22 -2.91 -0.02 4.91 16 Total: -1.00 -73.17 366.29 3.68 -69.50 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.45 Total: 31.28 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 5.87 Total: -14.49 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -3.45 Total: -87.13 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.32 Total: -44.14 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.17 3.68 -69.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318599958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.061 kcal (2) G-P(sol) polarization free energy of solvation -73.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds