Wall clock time and date at job start Tue Mar 31 2020 12:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00477 * 2 1 4 4 C 1.52994 * 109.47041 * 124.99979 * 3 2 1 5 5 H 1.09000 * 109.47400 * 304.99676 * 4 3 2 6 6 C 1.53005 * 109.46920 * 184.99996 * 4 3 2 7 7 N 1.46504 * 109.47474 * 65.00447 * 4 3 2 8 8 C 1.34777 * 119.99872 * 204.99906 * 7 4 3 9 9 O 1.21358 * 119.99918 * 359.97438 * 8 7 4 10 10 C 1.49319 * 119.99666 * 179.71906 * 8 7 4 11 11 O 1.21388 * 119.99905 * 0.27957 * 10 8 7 12 12 N 1.34778 * 120.00009 * 180.27486 * 10 8 7 13 13 C 1.39743 * 119.99826 * 175.50033 * 12 10 8 14 14 C 1.38994 * 120.00204 * 214.86485 * 13 12 10 15 15 C 1.37966 * 119.99094 * 179.78979 * 14 13 12 16 16 C 1.38940 * 120.00387 * 0.49142 * 15 14 13 17 17 O 1.35765 * 119.99051 * 179.72534 * 16 15 14 18 18 C 1.34804 * 116.99560 * 185.36779 * 17 16 15 19 19 H 1.07997 * 120.00366 * 354.95577 * 18 17 16 20 20 C 1.38654 * 119.99457 * 174.96139 * 18 17 16 21 21 N 1.31557 * 120.00439 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99614 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47593 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47252 * 120.00218 * 22 20 18 25 25 H 1.48502 * 109.47395 * 239.99743 * 22 20 18 26 26 C 1.38931 * 120.01942 * 359.73775 * 16 15 14 27 27 C 1.37969 * 119.99989 * 0.02741 * 26 16 15 28 28 H 1.07998 * 119.99670 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00490 * 180.02562 * 1 2 3 30 30 H 1.08011 * 119.99838 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46537 * 4.99863 * 3 2 1 32 32 H 1.09003 * 109.46630 * 245.00338 * 3 2 1 33 33 H 1.09000 * 109.47365 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.46823 * 300.00034 * 6 4 3 35 35 H 1.09003 * 109.46976 * 60.00019 * 6 4 3 36 36 H 0.97005 * 119.99904 * 24.99295 * 7 4 3 37 37 H 0.96994 * 119.99818 * 355.49756 * 12 10 8 38 38 H 1.08004 * 120.00515 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.99795 * 180.22778 * 15 14 13 40 40 H 0.97004 * 120.00280 * 180.02562 * 21 20 18 41 41 H 1.07997 * 120.00472 * 180.02562 * 26 16 15 42 42 H 1.08008 * 120.00164 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 1 2.4883 1.1469 2.1060 6 6 3.7093 2.7045 1.2552 7 7 4.0547 0.2967 1.0001 8 6 4.6912 -0.2172 2.0712 9 8 4.4200 0.1787 3.1859 10 6 5.7260 -1.2778 1.8867 11 8 5.9975 -1.6735 0.7717 12 7 6.3586 -1.7958 2.9582 13 6 7.2579 -2.8529 2.7951 14 6 7.3600 -3.8356 3.7727 15 6 8.2449 -4.8815 3.6095 16 6 9.0410 -4.9469 2.4727 17 8 9.9156 -5.9733 2.3149 18 6 10.7360 -5.9194 1.2466 19 1 10.6242 -5.1291 0.5191 20 6 11.7233 -6.8789 1.0817 21 7 11.8598 -7.8414 1.9680 22 14 12.8596 -6.8047 -0.3991 23 1 12.5017 -5.6340 -1.2396 24 1 14.2650 -6.6715 0.0616 25 1 12.7159 -8.0494 -1.1962 26 6 8.9426 -3.9623 1.4975 27 6 8.0544 -2.9188 1.6580 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9315 33 1 4.4011 2.7245 2.0972 34 1 4.2560 2.8905 0.3308 35 1 2.9507 3.4755 1.3902 36 1 4.2716 -0.0195 0.1091 37 1 6.1896 -1.4347 3.8424 38 1 6.7447 -3.7820 4.6587 39 1 8.3217 -5.6471 4.3673 40 1 12.5507 -8.5125 1.8528 41 1 9.5613 -4.0136 0.6138 42 1 7.9782 -2.1530 0.9001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318599959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:35 Heat of formation + Delta-G solvation = -49.592353 kcal Electronic energy + Delta-G solvation = -25222.086754 eV Core-core repulsion = 21361.757543 eV Total energy + Delta-G solvation = -3860.329211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.93391 -39.46803 -38.51526 -37.10076 -36.60347 -34.34953 -33.74570 -32.22779 -31.28928 -30.27323 -28.34590 -27.12052 -25.62346 -24.75193 -22.48688 -21.85655 -21.12703 -20.24231 -20.15648 -18.87359 -17.96043 -17.25561 -17.06895 -16.29177 -16.08037 -15.65383 -15.48712 -14.67727 -14.53273 -14.36548 -14.18673 -13.71922 -13.65457 -13.61656 -13.49912 -13.05353 -12.95187 -12.64583 -12.56787 -12.10348 -11.83742 -11.78737 -11.61181 -11.57547 -11.38079 -11.31781 -11.07677 -10.76016 -10.44580 -9.80232 -9.78942 -9.64186 -9.48056 -9.22605 -8.75959 -8.27087 -7.02181 -6.48862 -4.06100 1.25590 1.88969 2.11948 2.17274 2.37679 3.10291 3.13159 3.18802 3.22432 3.59794 3.94496 4.28055 4.40685 4.48529 4.54361 4.63278 4.89769 4.98256 5.05603 5.14701 5.21327 5.29454 5.34632 5.55461 5.58180 5.62189 5.67264 5.82305 6.01682 6.03607 6.09974 6.23279 6.25251 6.35661 6.62109 6.71812 6.87926 6.94910 7.03529 7.23946 7.37842 7.44113 7.67455 7.72505 7.96122 8.08451 8.96804 9.65263 10.68829 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.002271 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.765551 B =12326.858649 C =12726.496594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C -0.102 4.102 4 C 0.144 3.856 5 H 0.094 0.906 6 C -0.166 4.166 7 N -0.697 5.697 8 C 0.513 3.487 9 O -0.522 6.522 10 C 0.495 3.505 11 O -0.510 6.510 12 N -0.624 5.624 13 C 0.022 3.978 14 C -0.085 4.085 15 C -0.178 4.178 16 C 0.150 3.850 17 O -0.173 6.173 18 C -0.391 4.391 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.222 4.222 27 C -0.060 4.060 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.413 0.587 37 H 0.414 0.586 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.270 0.730 41 H 0.132 0.868 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.562 18.189 -2.399 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.139 4.139 4 C 0.040 3.960 5 H 0.112 0.888 6 C -0.224 4.224 7 N -0.351 5.351 8 C 0.294 3.706 9 O -0.398 6.398 10 C 0.276 3.724 11 O -0.385 6.385 12 N -0.269 5.269 13 C -0.070 4.070 14 C -0.105 4.105 15 C -0.198 4.198 16 C 0.095 3.905 17 O -0.076 6.076 18 C -0.467 4.467 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.242 4.242 27 C -0.080 4.080 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.080 0.920 41 H 0.150 0.850 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.399 17.793 -2.228 24.986 hybrid contribution 0.533 0.021 -0.755 0.924 sum -16.866 17.815 -2.983 24.713 Atomic orbital electron populations 1.23871 0.95878 1.01965 1.00985 1.22944 0.96142 0.98462 0.99982 1.21102 0.98048 0.96513 0.98269 1.21070 0.88026 0.87149 0.99768 0.88828 1.22209 1.01531 0.95792 1.02872 1.45861 1.39239 1.39875 1.10111 1.20164 0.82600 0.82680 0.85141 1.90752 1.64384 1.60657 1.23989 1.20047 0.82899 0.83855 0.85607 1.90774 1.63994 1.59970 1.23796 1.42844 1.40445 1.33179 1.10427 1.17241 0.97884 0.92087 0.99831 1.20391 0.98957 0.92849 0.98271 1.20005 1.00764 1.00766 0.98220 1.19446 0.90470 0.87719 0.92830 1.83970 1.41857 1.36914 1.44892 1.21409 1.11165 1.13760 1.00361 0.88856 1.25311 0.97199 0.95073 0.98959 1.70047 1.32267 1.13010 1.34157 0.85632 0.79336 0.78723 0.79671 1.19011 1.20110 1.20103 1.21091 1.04060 0.97204 1.01824 1.20838 0.92852 0.98052 0.96239 0.88551 0.88388 0.87124 0.89562 0.90026 0.91684 0.92047 0.91243 0.75055 0.74993 0.86428 0.85835 0.91989 0.85033 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 14.32 29.02 0.42 -0.81 16 2 C -0.16 -1.10 9.25 -36.02 -0.33 -1.43 16 3 C -0.10 -0.57 5.20 -27.88 -0.15 -0.72 16 4 C 0.14 1.07 2.56 -67.93 -0.17 0.90 16 5 H 0.09 0.83 7.58 -51.93 -0.39 0.43 16 6 C -0.17 -1.11 9.48 37.16 0.35 -0.75 16 7 N -0.70 -6.49 4.77 -54.28 -0.26 -6.75 16 8 C 0.51 6.29 7.85 -11.65 -0.09 6.20 16 9 O -0.52 -7.19 16.14 5.49 0.09 -7.10 16 10 C 0.49 7.16 7.73 -11.65 -0.09 7.07 16 11 O -0.51 -8.50 13.91 5.46 0.08 -8.42 16 12 N -0.62 -9.11 5.32 -10.27 -0.05 -9.16 16 13 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 14 C -0.08 -1.47 9.96 -39.40 -0.39 -1.87 16 15 C -0.18 -3.64 9.98 -39.42 -0.39 -4.04 16 16 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 17 O -0.17 -4.88 9.75 0.07 0.00 -4.88 16 18 C -0.39 -10.81 9.48 30.89 0.29 -10.52 16 19 H 0.09 2.40 5.19 -52.49 -0.27 2.13 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 22 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 C -0.22 -4.89 9.16 -39.42 -0.36 -5.26 16 27 C -0.06 -1.18 8.69 -39.40 -0.34 -1.52 16 28 H 0.10 0.50 7.84 -52.49 -0.41 0.09 16 29 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.11 0.87 8.03 -52.48 -0.42 0.45 16 31 H 0.09 0.37 7.79 -51.93 -0.40 -0.03 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.41 3.51 8.07 -40.82 -0.33 3.18 16 37 H 0.41 5.10 8.30 -40.82 -0.34 4.76 16 38 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.13 2.91 5.63 -52.49 -0.30 2.61 16 42 H 0.13 2.38 6.22 -52.48 -0.33 2.05 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -32.03 366.25 -6.33 -38.36 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.29 Total: 9.85 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.15 Total: -8.59 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.45 Total: -40.10 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.17 Total: -20.40 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.03 -6.33 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318599959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.234 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds