Wall clock time and date at job start Tue Mar 31 2020 12:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00477 * 2 1 4 4 C 1.52994 * 109.47041 * 124.99979 * 3 2 1 5 5 H 1.09000 * 109.47400 * 304.99676 * 4 3 2 6 6 C 1.53005 * 109.46920 * 184.99996 * 4 3 2 7 7 N 1.46504 * 109.47474 * 65.00447 * 4 3 2 8 8 C 1.34777 * 119.99872 * 204.99906 * 7 4 3 9 9 O 1.21358 * 119.99918 * 359.97438 * 8 7 4 10 10 C 1.49319 * 119.99666 * 179.71906 * 8 7 4 11 11 O 1.21388 * 119.99905 * 0.27957 * 10 8 7 12 12 N 1.34778 * 120.00009 * 180.27486 * 10 8 7 13 13 C 1.39743 * 119.99826 * 175.50033 * 12 10 8 14 14 C 1.38994 * 120.00204 * 214.86485 * 13 12 10 15 15 C 1.37966 * 119.99094 * 179.78979 * 14 13 12 16 16 C 1.38940 * 120.00387 * 0.49142 * 15 14 13 17 17 O 1.35765 * 119.99051 * 179.72534 * 16 15 14 18 18 C 1.34804 * 116.99560 * 185.36779 * 17 16 15 19 19 H 1.07997 * 120.00366 * 354.95577 * 18 17 16 20 20 C 1.38654 * 119.99457 * 174.96139 * 18 17 16 21 21 N 1.31557 * 120.00439 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99614 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47593 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47252 * 120.00218 * 22 20 18 25 25 H 1.48502 * 109.47395 * 239.99743 * 22 20 18 26 26 C 1.38931 * 120.01942 * 359.73775 * 16 15 14 27 27 C 1.37969 * 119.99989 * 0.02741 * 26 16 15 28 28 H 1.07998 * 119.99670 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00490 * 180.02562 * 1 2 3 30 30 H 1.08011 * 119.99838 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46537 * 4.99863 * 3 2 1 32 32 H 1.09003 * 109.46630 * 245.00338 * 3 2 1 33 33 H 1.09000 * 109.47365 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.46823 * 300.00034 * 6 4 3 35 35 H 1.09003 * 109.46976 * 60.00019 * 6 4 3 36 36 H 0.97005 * 119.99904 * 24.99295 * 7 4 3 37 37 H 0.96994 * 119.99818 * 355.49756 * 12 10 8 38 38 H 1.08004 * 120.00515 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.99795 * 180.22778 * 15 14 13 40 40 H 0.97004 * 120.00280 * 180.02562 * 21 20 18 41 41 H 1.07997 * 120.00472 * 180.02562 * 26 16 15 42 42 H 1.08008 * 120.00164 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 1 2.4883 1.1469 2.1060 6 6 3.7093 2.7045 1.2552 7 7 4.0547 0.2967 1.0001 8 6 4.6912 -0.2172 2.0712 9 8 4.4200 0.1787 3.1859 10 6 5.7260 -1.2778 1.8867 11 8 5.9975 -1.6735 0.7717 12 7 6.3586 -1.7958 2.9582 13 6 7.2579 -2.8529 2.7951 14 6 7.3600 -3.8356 3.7727 15 6 8.2449 -4.8815 3.6095 16 6 9.0410 -4.9469 2.4727 17 8 9.9156 -5.9733 2.3149 18 6 10.7360 -5.9194 1.2466 19 1 10.6242 -5.1291 0.5191 20 6 11.7233 -6.8789 1.0817 21 7 11.8598 -7.8414 1.9680 22 14 12.8596 -6.8047 -0.3991 23 1 12.5017 -5.6340 -1.2396 24 1 14.2650 -6.6715 0.0616 25 1 12.7159 -8.0494 -1.1962 26 6 8.9426 -3.9623 1.4975 27 6 8.0544 -2.9188 1.6580 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9315 33 1 4.4011 2.7245 2.0972 34 1 4.2560 2.8905 0.3308 35 1 2.9507 3.4755 1.3902 36 1 4.2716 -0.0195 0.1091 37 1 6.1896 -1.4347 3.8424 38 1 6.7447 -3.7820 4.6587 39 1 8.3217 -5.6471 4.3673 40 1 12.5507 -8.5125 1.8528 41 1 9.5613 -4.0136 0.6138 42 1 7.9782 -2.1530 0.9001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318599959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:34 Heat of formation + Delta-G solvation = -71.500366 kcal Electronic energy + Delta-G solvation = -25223.036757 eV Core-core repulsion = 21361.757543 eV Total energy + Delta-G solvation = -3861.279214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09978 -40.86186 -39.94674 -38.21532 -37.84631 -35.61120 -34.59808 -34.17002 -32.02356 -31.87486 -29.90668 -27.62417 -27.43693 -26.04319 -24.01509 -23.14073 -22.10893 -21.39782 -20.71494 -20.23685 -19.61298 -18.84598 -18.32653 -17.55626 -17.12433 -16.76692 -16.28205 -16.13614 -16.04120 -15.59727 -15.46883 -15.27681 -15.08643 -14.69987 -14.57662 -14.20156 -14.08755 -13.62204 -13.57972 -13.39549 -13.27144 -13.09059 -12.79842 -12.73831 -12.51126 -12.39051 -12.13713 -12.10461 -11.85623 -11.46697 -11.13202 -10.72441 -10.58112 -10.41023 -10.15786 -9.88227 -8.70538 -8.47931 -6.14582 0.06295 0.50529 0.69706 1.24641 1.36132 1.39691 1.43713 1.54016 2.07481 2.17509 2.57553 2.78960 3.12456 3.34233 3.48462 3.79104 3.94772 4.05786 4.08002 4.12556 4.37057 4.44668 4.45610 4.57362 4.64175 4.71631 4.73287 4.88454 5.04227 5.04948 5.06938 5.07354 5.25810 5.28001 5.31755 5.35688 5.49378 5.66111 5.75632 5.82698 5.91271 6.01109 6.10002 6.31827 6.71195 6.89256 6.96969 7.74990 8.74825 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.002271 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.765551 B =12326.858649 C =12726.496594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.172 4.172 3 C -0.093 4.093 4 C 0.143 3.857 5 H 0.082 0.918 6 C -0.162 4.162 7 N -0.682 5.682 8 C 0.520 3.480 9 O -0.537 6.537 10 C 0.498 3.502 11 O -0.530 6.530 12 N -0.620 5.620 13 C 0.049 3.951 14 C -0.071 4.071 15 C -0.180 4.180 16 C 0.113 3.887 17 O -0.224 6.224 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.021 4.021 21 N -0.917 5.917 22 Si 1.017 2.983 23 H -0.253 1.253 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.227 4.227 27 C -0.068 4.068 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.418 0.582 37 H 0.429 0.571 38 H 0.164 0.836 39 H 0.130 0.870 40 H 0.273 0.727 41 H 0.122 0.878 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.659 21.033 -2.952 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.190 4.190 3 C -0.131 4.131 4 C 0.040 3.960 5 H 0.100 0.900 6 C -0.220 4.220 7 N -0.335 5.335 8 C 0.300 3.700 9 O -0.414 6.414 10 C 0.280 3.720 11 O -0.407 6.407 12 N -0.267 5.267 13 C -0.045 4.045 14 C -0.091 4.091 15 C -0.199 4.199 16 C 0.061 3.939 17 O -0.130 6.130 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.219 4.219 21 N -0.555 5.555 22 Si 0.837 3.163 23 H -0.177 1.177 24 H -0.192 1.192 25 H -0.193 1.193 26 C -0.247 4.247 27 C -0.088 4.088 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.256 0.744 37 H 0.268 0.732 38 H 0.181 0.819 39 H 0.148 0.852 40 H 0.082 0.918 41 H 0.140 0.860 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.565 20.710 -2.781 28.626 hybrid contribution 0.827 -0.588 -0.504 1.133 sum -18.738 20.122 -3.285 27.691 Atomic orbital electron populations 1.24037 0.95832 1.02703 1.00027 1.22998 0.96497 0.98628 1.00917 1.21085 0.97821 0.96419 0.97729 1.21247 0.87712 0.86856 1.00235 0.90006 1.22183 1.01744 0.95662 1.02426 1.45933 1.38573 1.39446 1.09588 1.19674 0.82372 0.82349 0.85606 1.90759 1.64920 1.61197 1.24572 1.20518 0.82801 0.83720 0.84975 1.90774 1.64608 1.60581 1.24689 1.42793 1.39888 1.32449 1.11535 1.17371 0.96421 0.92165 0.98495 1.20778 0.97894 0.90963 0.99459 1.20306 1.00473 1.01854 0.97307 1.19969 0.91112 0.88080 0.94689 1.83940 1.43869 1.39332 1.45899 1.21840 1.11816 1.14388 1.00861 0.88205 1.26553 0.98656 0.94406 1.02262 1.70177 1.33895 1.14505 1.36886 0.84546 0.76902 0.79233 0.75650 1.17686 1.19235 1.19306 1.21104 1.04612 0.97700 1.01312 1.20939 0.92815 0.97582 0.97448 0.87013 0.88579 0.88577 0.87532 0.88936 0.93672 0.91217 0.89164 0.74449 0.73201 0.81856 0.85163 0.91756 0.86014 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 14.32 67.79 0.97 -1.06 16 2 C -0.17 -2.06 9.25 25.65 0.24 -1.82 16 3 C -0.09 -0.77 5.20 29.85 0.16 -0.61 16 4 C 0.14 1.77 2.56 44.99 0.12 1.88 16 5 H 0.08 1.27 7.58 -2.39 -0.02 1.25 16 6 C -0.16 -1.72 9.48 71.98 0.68 -1.03 16 7 N -0.68 -11.23 4.77 -443.99 -2.12 -13.35 16 8 C 0.52 11.61 7.85 87.23 0.68 12.30 16 9 O -0.54 -13.60 16.14 -3.27 -0.05 -13.65 16 10 C 0.50 13.31 7.73 87.23 0.67 13.98 16 11 O -0.53 -16.73 13.91 -3.37 -0.05 -16.78 16 12 N -0.62 -16.36 5.32 -304.75 -1.62 -17.98 16 13 C 0.05 1.62 6.30 38.24 0.24 1.86 16 14 C -0.07 -2.30 9.96 22.39 0.22 -2.07 16 15 C -0.18 -7.32 9.98 22.37 0.22 -7.09 16 16 C 0.11 5.55 6.65 22.60 0.15 5.70 16 17 O -0.22 -13.33 9.75 -22.65 -0.22 -13.55 16 18 C -0.41 -24.00 9.48 67.92 0.64 -23.35 16 19 H 0.10 5.39 5.19 -2.91 -0.02 5.38 16 20 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 21 N -0.92 -55.78 13.67 21.61 0.30 -55.49 16 22 Si 1.02 42.93 29.55 68.60 2.03 44.96 16 23 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 C -0.23 -10.26 9.16 22.37 0.20 -10.06 16 27 C -0.07 -2.61 8.69 22.39 0.19 -2.42 16 28 H 0.11 0.84 7.84 -2.91 -0.02 0.81 16 29 H 0.10 1.04 8.06 -2.91 -0.02 1.01 16 30 H 0.10 1.41 8.03 -2.90 -0.02 1.38 16 31 H 0.11 0.50 7.79 -2.39 -0.02 0.48 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.42 6.21 8.07 -92.70 -0.75 5.47 16 37 H 0.43 9.10 8.30 -92.71 -0.77 8.33 16 38 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 39 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 40 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.12 5.62 5.63 -2.91 -0.02 5.60 16 42 H 0.13 4.91 6.22 -2.91 -0.02 4.89 16 Total: -1.00 -73.25 366.25 3.68 -69.57 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.45 Total: 30.79 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 5.87 Total: -14.52 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.44 Total: -86.82 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.32 Total: -43.98 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -73.25 3.68 -69.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318599959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.930 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds