Wall clock time and date at job start Tue Mar 31 2020 12:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.64514 * 2 1 4 4 C 1.55162 * 110.87486 * 236.74652 * 2 1 3 5 5 C 1.55129 * 101.48508 * 205.90340 * 4 2 1 6 6 N 1.47424 * 104.72558 * 37.29513 * 5 4 2 7 7 C 1.34775 * 125.64482 * 155.81869 * 6 5 4 8 8 O 1.21371 * 119.99449 * 179.69700 * 7 6 5 9 9 C 1.49317 * 120.00517 * 359.68970 * 7 6 5 10 10 O 1.21390 * 119.99550 * 0.02562 * 9 7 6 11 11 N 1.34768 * 120.00309 * 179.72780 * 9 7 6 12 12 C 1.39743 * 120.00349 * 175.07345 * 11 9 7 13 13 C 1.38995 * 120.00035 * 326.07284 * 12 11 9 14 14 C 1.37969 * 119.98757 * 179.74469 * 13 12 11 15 15 C 1.38933 * 120.00857 * 0.53493 * 14 13 12 16 16 O 1.35761 * 119.99491 * 179.76201 * 15 14 13 17 17 C 1.34801 * 117.00273 * 185.89882 * 16 15 14 18 18 H 1.08003 * 119.99479 * 5.41011 * 17 16 15 19 19 C 1.38649 * 120.00096 * 185.40710 * 17 16 15 20 20 N 1.31560 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47211 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47013 * 119.99985 * 21 19 17 24 24 H 1.48492 * 109.47433 * 240.00025 * 21 19 17 25 25 C 1.38934 * 120.01497 * 359.74500 * 15 14 13 26 26 C 1.37967 * 120.00741 * 359.97438 * 25 15 14 27 27 C 1.47023 * 108.70306 * 335.55521 * 6 5 4 28 28 H 1.09000 * 109.47359 * 298.31734 * 1 2 3 29 29 H 1.09004 * 109.46885 * 58.31498 * 1 2 3 30 30 H 1.08998 * 109.47565 * 178.31153 * 1 2 3 31 31 H 1.09001 * 111.00374 * 324.14271 * 4 2 1 32 32 H 1.08995 * 110.99967 * 87.99074 * 4 2 1 33 33 H 1.08997 * 110.49194 * 278.45306 * 5 4 2 34 34 H 1.09002 * 110.33930 * 156.06251 * 5 4 2 35 35 H 0.97003 * 119.99727 * 355.06773 * 11 9 7 36 36 H 1.08001 * 120.00958 * 0.02562 * 13 12 11 37 37 H 1.08006 * 119.99931 * 180.28225 * 14 13 12 38 38 H 0.97004 * 119.99460 * 180.02562 * 20 19 17 39 39 H 1.08001 * 119.99806 * 179.97438 * 25 15 14 40 40 H 1.07998 * 120.00654 * 180.02562 * 26 25 15 41 41 H 1.08996 * 109.88390 * 120.70214 * 27 6 5 42 42 H 1.09003 * 109.87990 * 241.71735 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0828 -0.7950 -1.2124 5 6 3.4706 -1.2414 -0.6821 6 7 3.2470 -1.5462 0.7429 7 6 3.9956 -2.3767 1.4953 8 8 3.7210 -2.5493 2.6649 9 6 5.1627 -3.0847 0.8901 10 8 5.4375 -2.9118 -0.2795 11 7 5.9145 -3.9110 1.6440 12 6 6.9425 -4.6523 1.0554 13 6 6.8041 -5.1214 -0.2457 14 6 7.8213 -5.8488 -0.8284 15 6 8.9794 -6.1219 -0.1110 16 8 9.9782 -6.8418 -0.6830 17 6 11.0201 -7.1760 0.1044 18 1 10.9942 -6.9481 1.1597 19 6 12.1248 -7.8124 -0.4407 20 7 12.1563 -8.0896 -1.7263 21 14 13.5688 -8.2749 0.6503 22 1 13.2880 -7.8561 2.0472 23 1 13.7715 -9.7453 0.6062 24 1 14.7946 -7.5915 0.1651 25 6 9.1156 -5.6581 1.1915 26 6 8.1012 -4.9257 1.7729 27 6 2.0759 -0.7892 1.2087 28 1 -0.3634 0.4875 0.9047 29 1 -0.3633 0.5398 -0.8745 30 1 -0.3634 -1.0272 -0.0303 31 1 1.4514 -1.6548 -1.4366 32 1 2.1887 -0.1517 -2.0858 33 1 4.1969 -0.4356 -0.7882 34 1 3.8102 -2.1316 -1.2117 35 1 5.7421 -3.9910 2.5952 36 1 5.9022 -4.9126 -0.8020 37 1 7.7158 -6.2095 -1.8410 38 1 12.9291 -8.5352 -2.1075 39 1 10.0158 -5.8709 1.7491 40 1 8.2073 -4.5649 2.7852 41 1 1.3139 -1.4754 1.5782 42 1 2.3705 -0.1010 2.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319464869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:41 Heat of formation + Delta-G solvation = -59.334135 kcal Electronic energy + Delta-G solvation = -25568.412088 eV Core-core repulsion = 21707.660441 eV Total energy + Delta-G solvation = -3860.751647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02067 -39.59329 -38.62139 -37.85452 -36.60314 -34.19770 -33.15810 -32.23277 -30.29868 -29.98299 -28.48388 -27.30089 -25.51652 -24.43445 -22.91311 -22.31365 -21.14679 -20.58540 -19.88914 -18.20068 -17.96541 -17.36952 -16.91404 -16.66412 -16.13324 -15.60878 -15.02129 -14.61357 -14.45245 -14.17649 -14.10828 -13.77983 -13.61814 -13.50580 -13.31048 -13.16816 -12.88107 -12.79393 -12.54883 -12.16965 -11.96166 -11.73705 -11.65890 -11.50780 -11.36199 -11.20794 -11.11888 -10.93708 -10.70146 -10.45438 -9.80826 -9.52942 -9.29072 -9.03302 -8.77248 -8.28021 -7.01098 -6.49430 -4.06926 1.25518 2.11352 2.13240 2.31166 3.09268 3.11843 3.17473 3.22277 3.43008 3.93354 4.04753 4.20976 4.37015 4.40125 4.52168 4.89088 4.95190 5.00117 5.06140 5.19891 5.24173 5.27233 5.38880 5.50622 5.53112 5.55674 5.65452 5.68752 5.69248 5.83842 5.90743 6.05347 6.12774 6.17226 6.70496 6.73673 6.81720 6.98266 7.04842 7.16021 7.29445 7.41936 7.65745 7.71233 7.94930 8.08949 8.95938 9.65214 10.68309 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038674 B = 0.002224 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.833481 B =12584.270888 C =13120.276608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.132 4.132 5 C 0.094 3.906 6 N -0.592 5.592 7 C 0.523 3.477 8 O -0.525 6.525 9 C 0.499 3.501 10 O -0.505 6.505 11 N -0.624 5.624 12 C 0.027 3.973 13 C -0.063 4.063 14 C -0.178 4.178 15 C 0.150 3.850 16 O -0.173 6.173 17 C -0.392 4.392 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.219 4.219 26 C -0.082 4.082 27 C 0.109 3.891 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.413 0.587 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.270 0.730 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.511 14.397 4.104 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.170 4.170 5 C -0.028 4.028 6 N -0.326 5.326 7 C 0.306 3.694 8 O -0.402 6.402 9 C 0.281 3.719 10 O -0.380 6.380 11 N -0.270 5.270 12 C -0.066 4.066 13 C -0.083 4.083 14 C -0.198 4.198 15 C 0.095 3.905 16 O -0.076 6.076 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.494 5.494 21 Si 0.767 3.233 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.238 4.238 26 C -0.102 4.102 27 C -0.013 4.013 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.250 0.750 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.151 0.849 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.235 14.167 3.554 24.152 hybrid contribution 0.703 -0.133 1.112 1.322 sum -18.532 14.034 4.666 23.710 Atomic orbital electron populations 1.21752 0.93543 1.02395 1.02262 1.22256 0.96531 0.99486 0.94224 0.89486 1.23002 0.95916 1.00458 0.97664 1.22773 0.97049 1.03095 0.79862 1.48238 1.28970 1.42914 1.12514 1.19859 0.83658 0.79994 0.85840 1.90761 1.70498 1.63108 1.15787 1.19882 0.84201 0.80783 0.87044 1.90736 1.69112 1.62280 1.15921 1.42876 1.31260 1.40288 1.12564 1.17216 0.89966 1.03796 0.95574 1.20567 0.98519 0.95726 0.93522 1.20098 0.92849 1.05935 1.00871 1.19449 0.89463 0.90172 0.91388 1.83995 1.26210 1.59512 1.37892 1.21383 0.94634 1.38834 0.91915 0.88928 1.25316 0.98138 0.96602 0.96521 1.70051 1.30151 1.38103 1.11072 0.85631 0.79915 0.78540 0.79253 1.19051 1.20112 1.20120 1.20991 1.00677 1.05515 0.96664 1.20503 0.91470 0.99187 0.99040 1.22152 0.87281 0.94765 0.97131 0.92214 0.91907 0.92221 0.90296 0.89486 0.90701 0.87665 0.75015 0.85820 0.85935 0.91973 0.84896 0.86852 0.90802 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.14 37.15 0.34 -0.31 16 2 C -0.11 -0.62 3.53 -88.78 -0.31 -0.94 16 3 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.13 -0.85 6.55 -24.46 -0.16 -1.01 16 5 C 0.09 0.89 6.08 -2.41 -0.01 0.87 16 6 N -0.59 -6.56 3.32 -170.93 -0.57 -7.13 16 7 C 0.52 7.15 7.91 -11.65 -0.09 7.06 16 8 O -0.53 -8.00 16.81 5.48 0.09 -7.91 16 9 C 0.50 7.51 7.58 -11.65 -0.09 7.42 16 10 O -0.50 -8.36 11.49 5.46 0.06 -8.29 16 11 N -0.62 -9.40 5.32 -10.27 -0.05 -9.45 16 12 C 0.03 0.48 6.27 -83.69 -0.52 -0.05 16 13 C -0.06 -1.21 8.64 -39.40 -0.34 -1.55 16 14 C -0.18 -3.79 9.98 -39.42 -0.39 -4.19 16 15 C 0.15 3.57 6.65 -39.07 -0.26 3.31 16 16 O -0.17 -4.86 9.75 0.10 0.00 -4.86 16 17 C -0.39 -10.73 9.44 30.88 0.29 -10.44 16 18 H 0.09 2.33 5.29 -52.48 -0.28 2.06 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -24.89 13.67 55.48 0.76 -24.14 16 21 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.22 -4.63 9.12 -39.42 -0.36 -4.99 16 26 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 27 C 0.11 0.92 6.46 -3.06 -0.02 0.90 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 8.13 -51.93 -0.42 -0.13 16 31 H 0.08 0.50 8.05 -51.93 -0.42 0.09 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.11 1.17 6.14 -51.93 -0.32 0.85 16 35 H 0.41 5.35 8.29 -40.82 -0.34 5.01 16 36 H 0.12 2.23 6.45 -52.49 -0.34 1.89 16 37 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 38 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 41 H 0.07 0.63 7.82 -51.93 -0.41 0.23 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -32.01 353.22 -7.17 -39.18 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.34 Total: 6.92 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.42 Total: -4.81 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.14 Total: -40.72 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.16 Total: -21.07 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.01 -7.17 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319464869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.155 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds