Wall clock time and date at job start Tue Mar 31 2020 12:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.64514 * 2 1 4 4 C 1.55162 * 110.87486 * 236.74652 * 2 1 3 5 5 C 1.55129 * 101.48508 * 205.90340 * 4 2 1 6 6 N 1.47424 * 104.72558 * 37.29513 * 5 4 2 7 7 C 1.34775 * 125.64482 * 155.81869 * 6 5 4 8 8 O 1.21371 * 119.99449 * 179.69700 * 7 6 5 9 9 C 1.49317 * 120.00517 * 359.68970 * 7 6 5 10 10 O 1.21390 * 119.99550 * 0.02562 * 9 7 6 11 11 N 1.34768 * 120.00309 * 179.72780 * 9 7 6 12 12 C 1.39743 * 120.00349 * 175.07345 * 11 9 7 13 13 C 1.38995 * 120.00035 * 326.07284 * 12 11 9 14 14 C 1.37969 * 119.98757 * 179.74469 * 13 12 11 15 15 C 1.38933 * 120.00857 * 0.53493 * 14 13 12 16 16 O 1.35761 * 119.99491 * 179.76201 * 15 14 13 17 17 C 1.34801 * 117.00273 * 185.89882 * 16 15 14 18 18 H 1.08003 * 119.99479 * 5.41011 * 17 16 15 19 19 C 1.38649 * 120.00096 * 185.40710 * 17 16 15 20 20 N 1.31560 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47211 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47013 * 119.99985 * 21 19 17 24 24 H 1.48492 * 109.47433 * 240.00025 * 21 19 17 25 25 C 1.38934 * 120.01497 * 359.74500 * 15 14 13 26 26 C 1.37967 * 120.00741 * 359.97438 * 25 15 14 27 27 C 1.47023 * 108.70306 * 335.55521 * 6 5 4 28 28 H 1.09000 * 109.47359 * 298.31734 * 1 2 3 29 29 H 1.09004 * 109.46885 * 58.31498 * 1 2 3 30 30 H 1.08998 * 109.47565 * 178.31153 * 1 2 3 31 31 H 1.09001 * 111.00374 * 324.14271 * 4 2 1 32 32 H 1.08995 * 110.99967 * 87.99074 * 4 2 1 33 33 H 1.08997 * 110.49194 * 278.45306 * 5 4 2 34 34 H 1.09002 * 110.33930 * 156.06251 * 5 4 2 35 35 H 0.97003 * 119.99727 * 355.06773 * 11 9 7 36 36 H 1.08001 * 120.00958 * 0.02562 * 13 12 11 37 37 H 1.08006 * 119.99931 * 180.28225 * 14 13 12 38 38 H 0.97004 * 119.99460 * 180.02562 * 20 19 17 39 39 H 1.08001 * 119.99806 * 179.97438 * 25 15 14 40 40 H 1.07998 * 120.00654 * 180.02562 * 26 25 15 41 41 H 1.08996 * 109.88390 * 120.70214 * 27 6 5 42 42 H 1.09003 * 109.87990 * 241.71735 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0828 -0.7950 -1.2124 5 6 3.4706 -1.2414 -0.6821 6 7 3.2470 -1.5462 0.7429 7 6 3.9956 -2.3767 1.4953 8 8 3.7210 -2.5493 2.6649 9 6 5.1627 -3.0847 0.8901 10 8 5.4375 -2.9118 -0.2795 11 7 5.9145 -3.9110 1.6440 12 6 6.9425 -4.6523 1.0554 13 6 6.8041 -5.1214 -0.2457 14 6 7.8213 -5.8488 -0.8284 15 6 8.9794 -6.1219 -0.1110 16 8 9.9782 -6.8418 -0.6830 17 6 11.0201 -7.1760 0.1044 18 1 10.9942 -6.9481 1.1597 19 6 12.1248 -7.8124 -0.4407 20 7 12.1563 -8.0896 -1.7263 21 14 13.5688 -8.2749 0.6503 22 1 13.2880 -7.8561 2.0472 23 1 13.7715 -9.7453 0.6062 24 1 14.7946 -7.5915 0.1651 25 6 9.1156 -5.6581 1.1915 26 6 8.1012 -4.9257 1.7729 27 6 2.0759 -0.7892 1.2087 28 1 -0.3634 0.4875 0.9047 29 1 -0.3633 0.5398 -0.8745 30 1 -0.3634 -1.0272 -0.0303 31 1 1.4514 -1.6548 -1.4366 32 1 2.1887 -0.1517 -2.0858 33 1 4.1969 -0.4356 -0.7882 34 1 3.8102 -2.1316 -1.2117 35 1 5.7421 -3.9910 2.5952 36 1 5.9022 -4.9126 -0.8020 37 1 7.7158 -6.2095 -1.8410 38 1 12.9291 -8.5352 -2.1075 39 1 10.0158 -5.8709 1.7491 40 1 8.2073 -4.5649 2.7852 41 1 1.3139 -1.4754 1.5782 42 1 2.3705 -0.1010 2.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319464869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:40 Heat of formation + Delta-G solvation = -80.408338 kcal Electronic energy + Delta-G solvation = -25569.325934 eV Core-core repulsion = 21707.660441 eV Total energy + Delta-G solvation = -3861.665493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18761 -40.94007 -40.05621 -38.81984 -38.21544 -35.61010 -34.19370 -33.91636 -31.93677 -30.64136 -29.98507 -28.18804 -27.35862 -25.48993 -24.01706 -23.77930 -22.52972 -21.34336 -21.00948 -19.88689 -19.20427 -18.92442 -18.20361 -17.68473 -17.47108 -16.60903 -16.41951 -16.29239 -15.84428 -15.58624 -15.41496 -14.93990 -14.77406 -14.59295 -14.43971 -14.23351 -14.11548 -13.75226 -13.62276 -13.43683 -13.36749 -13.29206 -12.80112 -12.70927 -12.65246 -12.37876 -12.07879 -11.95646 -11.69871 -11.55027 -11.45130 -11.10345 -10.69374 -10.59509 -9.93085 -9.89092 -8.69661 -8.46804 -6.13655 0.01228 0.49060 0.68635 1.13044 1.37698 1.45378 1.55871 2.01088 2.18308 2.36674 2.79247 3.12791 3.17011 3.47235 3.55603 3.60021 3.89321 4.00780 4.07336 4.27276 4.35373 4.45168 4.50597 4.56858 4.59609 4.64480 4.77091 4.83361 4.93192 5.00641 5.03578 5.08703 5.10929 5.14184 5.23478 5.30476 5.36079 5.45077 5.46790 5.62677 5.92466 6.01333 6.05922 6.17193 6.56998 6.83928 6.97817 7.76819 8.76363 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038674 B = 0.002224 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.833481 B =12584.270888 C =13120.276608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.100 0.900 4 C -0.124 4.124 5 C 0.088 3.912 6 N -0.587 5.587 7 C 0.524 3.476 8 O -0.544 6.544 9 C 0.502 3.498 10 O -0.519 6.519 11 N -0.621 5.621 12 C 0.052 3.948 13 C -0.065 4.065 14 C -0.185 4.185 15 C 0.113 3.887 16 O -0.226 6.226 17 C -0.412 4.412 18 H 0.107 0.893 19 C -0.024 4.024 20 N -0.919 5.919 21 Si 1.020 2.980 22 H -0.248 1.248 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.219 4.219 26 C -0.074 4.074 27 C 0.101 3.899 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.427 0.573 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.273 0.727 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.073 0.927 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.365 16.550 5.995 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.118 0.882 4 C -0.162 4.162 5 C -0.034 4.034 6 N -0.320 5.320 7 C 0.306 3.694 8 O -0.423 6.423 9 C 0.285 3.715 10 O -0.395 6.395 11 N -0.268 5.268 12 C -0.041 4.041 13 C -0.085 4.085 14 C -0.204 4.204 15 C 0.062 3.938 16 O -0.133 6.133 17 C -0.488 4.488 18 H 0.124 0.876 19 C -0.222 4.222 20 N -0.557 5.557 21 Si 0.839 3.161 22 H -0.171 1.171 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.239 4.239 26 C -0.094 4.094 27 C -0.020 4.020 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.266 0.734 36 H 0.154 0.846 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.173 0.827 41 H 0.092 0.908 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.172 16.377 5.465 27.319 hybrid contribution 0.905 -0.559 0.552 1.199 sum -20.266 15.818 6.017 26.404 Atomic orbital electron populations 1.21742 0.92318 1.02453 1.03170 1.22262 0.97369 0.99483 0.92371 0.88219 1.23001 0.93754 1.00935 0.98488 1.22895 0.99214 1.02414 0.78869 1.48408 1.28818 1.41671 1.13080 1.19484 0.83570 0.80605 0.85722 1.90757 1.71032 1.64125 1.16371 1.20242 0.84244 0.80350 0.86712 1.90747 1.69427 1.62667 1.16680 1.42820 1.30570 1.40096 1.13313 1.17336 0.90249 1.01658 0.94814 1.20703 0.98216 0.95208 0.94349 1.20243 0.92919 1.06275 1.00995 1.19913 0.89507 0.91385 0.92981 1.83962 1.27650 1.62314 1.39339 1.21897 0.94907 1.39227 0.92729 0.87614 1.26615 1.01101 0.96340 0.98101 1.70197 1.31521 1.40564 1.13441 0.84508 0.75527 0.78266 0.77793 1.17141 1.19511 1.19555 1.21120 1.01646 1.05479 0.95641 1.20822 0.90153 0.97720 1.00699 1.22422 0.86232 0.94784 0.98539 0.91625 0.90707 0.92630 0.90208 0.87436 0.90388 0.89491 0.73378 0.84629 0.86247 0.91829 0.84869 0.82702 0.90827 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.14 71.98 0.66 -0.19 16 2 C -0.10 -0.83 3.53 -9.60 -0.03 -0.87 16 3 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.12 -1.24 6.55 32.07 0.21 -1.03 16 5 C 0.09 1.49 6.08 86.93 0.53 2.02 16 6 N -0.59 -11.89 3.32 -813.06 -2.70 -14.59 16 7 C 0.52 13.37 7.91 87.23 0.69 14.06 16 8 O -0.54 -15.57 16.81 -3.31 -0.06 -15.63 16 9 C 0.50 14.16 7.58 87.23 0.66 14.82 16 10 O -0.52 -16.43 11.49 -3.37 -0.04 -16.47 16 11 N -0.62 -17.13 5.32 -304.76 -1.62 -18.75 16 12 C 0.05 1.76 6.27 38.24 0.24 2.00 16 13 C -0.06 -2.43 8.64 22.39 0.19 -2.23 16 14 C -0.18 -8.08 9.98 22.37 0.22 -7.86 16 15 C 0.11 5.58 6.65 22.60 0.15 5.73 16 16 O -0.23 -13.43 9.75 -22.57 -0.22 -13.65 16 17 C -0.41 -23.43 9.44 67.92 0.64 -22.79 16 18 H 0.11 5.44 5.29 -2.91 -0.02 5.42 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 20 N -0.92 -55.97 13.67 21.61 0.30 -55.68 16 21 Si 1.02 42.14 29.55 68.60 2.03 44.16 16 22 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 C -0.22 -9.20 9.12 22.37 0.20 -9.00 16 26 C -0.07 -2.49 9.96 22.39 0.22 -2.27 16 27 C 0.10 1.48 6.46 86.73 0.56 2.04 16 28 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 0.40 8.13 -2.39 -0.02 0.38 16 31 H 0.08 0.82 8.05 -2.39 -0.02 0.80 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.83 6.14 -2.39 -0.01 1.82 16 35 H 0.43 9.77 8.29 -92.71 -0.77 9.00 16 36 H 0.14 4.75 6.45 -2.91 -0.02 4.73 16 37 H 0.12 5.17 8.06 -2.91 -0.02 5.14 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.13 5.54 5.71 -2.91 -0.02 5.52 16 40 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 41 H 0.07 1.11 7.82 -2.39 -0.02 1.09 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -72.92 353.22 3.59 -69.33 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.29 Total: 27.73 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.62 Total: -6.44 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -4.03 Total: -89.02 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.31 Total: -45.75 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -72.92 3.59 -69.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319464869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.080 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds