Wall clock time and date at job start Tue Mar 31 2020 12:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.43938 * 2 1 4 4 C 1.54215 * 109.43978 * 240.10881 * 2 1 3 5 5 C 1.45740 * 113.00442 * 160.41840 * 4 2 1 6 6 S 1.81931 * 113.29087 * 65.65172 * 5 4 2 7 7 O 1.42095 * 108.54355 * 39.13590 * 6 5 4 8 8 O 1.42104 * 108.54463 * 170.07298 * 6 5 4 9 9 C 1.79950 * 102.17372 * 284.58236 * 6 5 4 10 10 C 1.54087 * 111.02171 * 84.35046 * 9 6 5 11 11 N 1.44748 * 109.44356 * 119.93281 * 2 1 3 12 12 C 1.34769 * 119.58677 * 37.73069 * 11 2 1 13 13 O 1.21589 * 120.00233 * 355.88935 * 12 11 2 14 14 N 1.34776 * 120.00268 * 175.88477 * 12 11 2 15 15 C 1.46500 * 120.00379 * 185.17442 * 14 12 11 16 16 C 1.53000 * 109.47231 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47195 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47116 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99949 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99997 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00446 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47230 * 90.00168 * 22 20 18 24 24 H 1.48499 * 109.47324 * 210.00053 * 22 20 18 25 25 H 1.48499 * 109.47207 * 330.00341 * 22 20 18 26 26 H 1.09001 * 109.46493 * 284.26393 * 1 2 3 27 27 H 1.09002 * 109.46888 * 44.26587 * 1 2 3 28 28 H 1.08999 * 109.46691 * 164.26818 * 1 2 3 29 29 H 1.08999 * 108.77914 * 281.32565 * 4 2 1 30 30 H 1.08996 * 108.77595 * 39.62939 * 4 2 1 31 31 H 1.09008 * 108.72008 * 186.63273 * 5 4 2 32 32 H 1.08998 * 108.72366 * 304.66639 * 5 4 2 33 33 H 1.09002 * 109.19729 * 204.78653 * 9 6 5 34 34 H 1.09000 * 109.19730 * 324.11322 * 9 6 5 35 35 H 1.09001 * 108.54185 * 195.66992 * 10 9 6 36 36 H 1.09004 * 108.35807 * 78.51033 * 10 9 6 37 37 H 0.97000 * 119.99481 * 5.17061 * 14 12 11 38 38 H 1.09004 * 109.46610 * 299.99909 * 15 14 12 39 39 H 1.08996 * 109.47031 * 59.99816 * 15 14 12 40 40 H 1.09002 * 109.46615 * 299.99968 * 16 15 14 41 41 H 1.09001 * 109.47154 * 59.99486 * 16 15 14 42 42 H 1.09007 * 109.47074 * 299.99952 * 17 16 15 43 43 H 1.09001 * 109.47524 * 59.99670 * 17 16 15 44 44 H 0.97000 * 120.00132 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0433 -0.7247 -1.2608 5 6 3.4247 -0.3930 -1.5858 6 16 4.6159 -0.9698 -0.3375 7 8 4.2071 -2.2519 0.1187 8 8 5.9289 -0.8044 -0.8552 9 6 4.3737 0.2157 0.9945 10 6 3.1948 -0.1990 1.8959 11 7 2.0119 -0.6811 1.1829 12 6 1.3594 -1.7697 1.6362 13 8 0.3307 -2.1301 1.0974 14 7 1.8470 -2.4589 2.6867 15 6 1.2021 -3.7049 3.1084 16 6 1.9466 -4.2818 4.3141 17 6 1.2735 -5.5833 4.7542 18 6 2.0072 -6.1518 5.9414 19 1 2.8678 -5.6366 6.3417 20 6 1.5798 -7.3298 6.5165 21 7 2.2198 -7.8257 7.5530 22 14 0.0909 -8.2206 5.8245 23 1 0.5295 -9.1799 4.7793 24 1 -0.5964 -8.9574 6.9154 25 1 -0.8443 -7.2329 5.2287 26 1 -0.3632 0.2532 0.9960 27 1 -0.3633 0.7359 -0.7173 28 1 -0.3633 -0.9892 -0.2786 29 1 1.9690 -1.8005 -1.1019 30 1 1.4106 -0.4508 -2.1050 31 1 3.6768 -0.8452 -2.5451 32 1 3.5120 0.6895 -1.6787 33 1 5.2817 0.2706 1.5950 34 1 4.1665 1.1970 0.5677 35 1 2.9039 0.6587 2.5025 36 1 3.5362 -0.9877 2.5665 37 1 2.6251 -2.1300 3.1634 38 1 0.1669 -3.5030 3.3836 39 1 1.2268 -4.4224 2.2883 40 1 2.9820 -4.4834 4.0393 41 1 1.9216 -3.5640 5.1341 42 1 0.2380 -5.3820 5.0288 43 1 1.2990 -6.3009 3.9341 44 1 1.9193 -8.6547 7.9573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320786045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:50 Heat of formation + Delta-G solvation = -86.961772 kcal Electronic energy + Delta-G solvation = -25964.755860 eV Core-core repulsion = 22238.250141 eV Total energy + Delta-G solvation = -3726.505720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.83427 -37.64642 -37.02545 -36.29728 -35.57331 -34.73511 -33.14380 -31.95094 -31.42108 -29.68558 -26.97703 -24.64302 -24.35051 -23.31589 -21.90164 -20.57656 -19.48522 -19.04330 -18.03934 -17.51394 -17.12649 -16.66995 -16.41142 -15.76448 -15.63116 -15.15084 -14.72085 -14.54512 -14.31619 -14.23880 -13.86169 -13.66923 -13.35948 -13.09249 -12.65306 -12.58386 -12.36467 -12.31937 -12.19820 -12.05987 -11.89709 -11.81823 -11.79214 -11.39424 -11.11916 -10.97862 -10.84505 -10.65399 -10.06553 -9.85106 -9.70274 -9.47371 -9.18232 -9.10212 -8.62263 -8.51406 -6.02541 -4.00832 -0.38409 2.27834 2.47696 3.21709 3.28956 3.35048 3.42110 3.42978 3.46823 3.76695 3.98132 4.07356 4.15619 4.47238 4.48312 4.61229 4.76256 4.79471 4.87574 4.95670 5.12203 5.29052 5.31871 5.38219 5.51077 5.60051 5.69042 5.77020 5.86997 6.10917 6.13792 6.36440 6.53012 6.54123 6.71447 6.86562 6.89406 7.28994 7.42520 7.79765 7.97890 8.54365 8.66343 9.01601 9.59992 11.10772 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.003123 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.399204 B = 8962.261920 C = 9686.443309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.150 3.850 3 H 0.086 0.914 4 C -0.127 4.127 5 C -0.596 4.596 6 S 2.421 3.579 7 O -0.914 6.914 8 O -0.945 6.945 9 C -0.638 4.638 10 C 0.130 3.870 11 N -0.637 5.637 12 C 0.716 3.284 13 O -0.577 6.577 14 N -0.735 5.735 15 C 0.132 3.868 16 C -0.114 4.114 17 C -0.011 4.011 18 C -0.520 4.520 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.393 0.607 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 23.332 -18.508 29.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.104 0.896 4 C -0.166 4.166 5 C -0.725 4.725 6 S 2.601 3.399 7 O -0.911 6.911 8 O -0.942 6.942 9 C -0.767 4.767 10 C 0.005 3.995 11 N -0.377 5.377 12 C 0.418 3.582 13 O -0.455 6.455 14 N -0.391 5.391 15 C 0.009 3.991 16 C -0.152 4.152 17 C -0.049 4.049 18 C -0.558 4.558 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.189 1.189 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.969 22.176 -18.791 29.133 hybrid contribution -0.519 0.487 -0.029 0.712 sum 1.450 22.662 -18.820 29.493 Atomic orbital electron populations 1.22252 0.92313 1.04493 1.02067 1.21012 0.97044 0.94758 0.82679 0.89630 1.20574 0.92649 1.03951 0.99442 1.28994 1.12530 1.12611 1.18315 1.08054 0.76315 0.77352 0.78184 1.93650 1.83031 1.34752 1.79680 1.93609 1.34696 1.87020 1.78854 1.30801 1.07858 1.18926 1.19089 1.20965 0.83576 1.01773 0.93223 1.47003 1.29330 1.30813 1.30520 1.15741 0.82853 0.78958 0.80643 1.90860 1.24177 1.69706 1.60744 1.45535 1.34220 1.26482 1.32823 1.21531 0.96709 0.83132 0.97741 1.21710 0.99667 0.99057 0.94762 1.19497 0.96375 0.92206 0.96788 1.21104 1.14532 1.07611 1.12590 0.91036 1.25028 0.96737 0.97094 0.94658 1.69917 1.40737 1.21010 1.22673 0.86770 0.83620 0.80112 0.78768 1.20233 1.21446 1.18859 0.92212 0.93079 0.88451 0.89029 0.88941 0.84685 0.85573 0.83054 0.84635 0.89815 0.88934 0.77059 0.91874 0.91808 0.92035 0.92249 0.96311 0.96664 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 7.81 37.16 0.29 -1.14 16 2 C 0.15 1.16 2.44 -68.23 -0.17 0.99 16 3 H 0.09 0.37 7.63 -51.93 -0.40 -0.03 16 4 C -0.13 -0.93 4.66 -29.53 -0.14 -1.07 16 5 C -0.60 -3.19 5.61 33.73 0.19 -3.00 16 6 S 2.42 19.64 5.12 -107.50 -0.55 19.09 16 7 O -0.91 -11.64 16.55 -57.83 -0.96 -12.60 16 8 O -0.94 -10.71 18.09 -57.83 -1.05 -11.76 16 9 C -0.64 -2.90 5.87 37.73 0.22 -2.67 16 10 C 0.13 0.87 5.58 -3.59 -0.02 0.85 16 11 N -0.64 -6.21 1.95 -171.84 -0.33 -6.54 16 12 C 0.72 10.14 7.68 -86.93 -0.67 9.47 16 13 O -0.58 -9.83 13.07 5.29 0.07 -9.76 16 14 N -0.73 -10.52 5.43 -65.23 -0.35 -10.87 16 15 C 0.13 2.26 5.68 -4.04 -0.02 2.23 16 16 C -0.11 -2.18 5.27 -26.73 -0.14 -2.32 16 17 C -0.01 -0.25 4.04 -27.89 -0.11 -0.37 16 18 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 19 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 22 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 26 H 0.06 0.63 8.01 -51.93 -0.42 0.22 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.10 1.19 6.00 -51.93 -0.31 0.88 16 29 H 0.09 0.96 7.53 -51.93 -0.39 0.57 16 30 H 0.09 0.54 7.96 -51.93 -0.41 0.12 16 31 H 0.14 0.61 8.14 -51.91 -0.42 0.18 16 32 H 0.13 0.25 8.08 -51.91 -0.42 -0.17 16 33 H 0.15 0.46 8.14 -51.81 -0.42 0.03 16 34 H 0.14 0.17 7.92 -51.81 -0.41 -0.24 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.66 5.51 -51.93 -0.29 0.37 16 37 H 0.39 4.64 5.88 -40.82 -0.24 4.40 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.02 0.44 7.20 -51.92 -0.37 0.07 16 43 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -38.61 352.88 -9.77 -48.37 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.02 Total: -0.97 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.00 Total: -10.34 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.08 Total: -44.67 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.93 Total: -34.11 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Atomic # 16 Polarization: 19.64 SS G_CDS: -0.55 Total: 19.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.61 -9.77 -48.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320786045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.588 kcal (2) G-P(sol) polarization free energy of solvation -38.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds